Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05016

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05014 and MPMX19_05015 are separated by 112 nucleotidesMPMX19_05015 and MPMX19_05016 are separated by 30 nucleotidesMPMX19_05016 and MPMX19_05017 are separated by 216 nucleotides MPMX19_05014: MPMX19_05014 - Cytochrome c1, at 495,799 to 496,560 _05014 MPMX19_05015: MPMX19_05015 - hypothetical protein, at 496,673 to 497,224 _05015 MPMX19_05016: MPMX19_05016 - Sensor histidine kinase RcsC, at 497,255 to 498,133 _05016 MPMX19_05017: MPMX19_05017 - hypothetical protein, at 498,350 to 499,816 _05017 Position (kb) 497 498 499Strain fitness (log2 ratio) -2 -1 0 1 2at 496.309 kb on + strand, within MPMX19_05014at 496.309 kb on + strand, within MPMX19_05014at 496.309 kb on + strand, within MPMX19_05014at 496.309 kb on + strand, within MPMX19_05014at 496.309 kb on + strand, within MPMX19_05014at 496.309 kb on + strand, within MPMX19_05014at 496.310 kb on - strand, within MPMX19_05014at 496.310 kb on - strand, within MPMX19_05014at 496.310 kb on - strand, within MPMX19_05014at 496.522 kb on + strandat 496.522 kb on + strandat 496.523 kb on - strandat 496.523 kb on - strandat 496.588 kb on + strandat 496.588 kb on + strandat 496.588 kb on + strandat 496.589 kb on - strandat 496.589 kb on - strandat 496.589 kb on - strandat 496.733 kb on + strand, within MPMX19_05015at 496.733 kb on + strand, within MPMX19_05015at 496.793 kb on + strand, within MPMX19_05015at 496.793 kb on + strand, within MPMX19_05015at 496.793 kb on + strand, within MPMX19_05015at 496.794 kb on - strand, within MPMX19_05015at 496.794 kb on - strand, within MPMX19_05015at 496.794 kb on - strand, within MPMX19_05015at 496.794 kb on - strand, within MPMX19_05015at 496.817 kb on + strand, within MPMX19_05015at 496.817 kb on + strand, within MPMX19_05015at 496.817 kb on + strand, within MPMX19_05015at 496.817 kb on + strand, within MPMX19_05015at 496.817 kb on + strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 497.006 kb on + strand, within MPMX19_05015at 497.006 kb on + strand, within MPMX19_05015at 497.006 kb on + strand, within MPMX19_05015at 497.006 kb on + strand, within MPMX19_05015at 497.007 kb on - strand, within MPMX19_05015at 497.007 kb on - strand, within MPMX19_05015at 497.007 kb on - strand, within MPMX19_05015at 497.099 kb on + strand, within MPMX19_05015at 497.100 kb on - strand, within MPMX19_05015at 497.100 kb on - strand, within MPMX19_05015at 497.328 kb on + strandat 497.328 kb on + strandat 497.328 kb on + strandat 497.328 kb on + strandat 497.328 kb on + strandat 497.328 kb on + strandat 497.328 kb on + strandat 497.329 kb on - strandat 497.329 kb on - strandat 497.329 kb on - strandat 497.329 kb on - strandat 497.329 kb on - strandat 497.823 kb on + strand, within MPMX19_05016at 497.824 kb on - strand, within MPMX19_05016at 497.824 kb on - strand, within MPMX19_05016at 498.298 kb on + strandat 498.298 kb on + strandat 498.298 kb on + strandat 498.298 kb on + strandat 498.298 kb on + strandat 498.298 kb on + strandat 498.298 kb on + strandat 498.298 kb on + strandat 498.298 kb on + strandat 498.298 kb on + strandat 498.299 kb on - strandat 498.299 kb on - strandat 498.299 kb on - strandat 498.299 kb on - strandat 498.299 kb on - strandat 498.299 kb on - strandat 498.299 kb on - strandat 498.299 kb on - strandat 498.299 kb on - strandat 498.299 kb on - strandat 498.306 kb on + strandat 498.307 kb on - strandat 498.349 kb on + strandat 498.349 kb on + strandat 498.349 kb on + strandat 498.349 kb on + strandat 498.349 kb on + strandat 498.378 kb on + strandat 498.446 kb on + strandat 498.446 kb on + strandat 498.447 kb on - strandat 498.447 kb on - strandat 498.479 kb on + strandat 498.479 kb on + strandat 498.479 kb on + strandat 498.480 kb on - strandat 498.480 kb on - strandat 498.480 kb on - strandat 498.480 kb on - strandat 498.480 kb on - strandat 498.480 kb on - strandat 498.480 kb on - strandat 498.506 kb on + strand, within MPMX19_05017at 498.506 kb on + strand, within MPMX19_05017at 499.007 kb on + strand, within MPMX19_05017at 499.007 kb on + strand, within MPMX19_05017

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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496,309 + MPMX19_05014 0.67 -0.7
496,309 + MPMX19_05014 0.67 +0.5
496,309 + MPMX19_05014 0.67 +2.1
496,309 + MPMX19_05014 0.67 +2.1
496,309 + MPMX19_05014 0.67 +1.5
496,309 + MPMX19_05014 0.67 -0.5
496,310 - MPMX19_05014 0.67 +1.1
496,310 - MPMX19_05014 0.67 +0.1
496,310 - MPMX19_05014 0.67 +0.1
496,522 + +1.1
496,522 + +0.1
496,523 - +0.1
496,523 - +0.1
496,588 + +0.5
496,588 + +0.6
496,588 + -1.7
496,589 - -0.8
496,589 - -0.5
496,589 - -1.1
496,733 + MPMX19_05015 0.11 -1.1
496,733 + MPMX19_05015 0.11 +1.6
496,793 + MPMX19_05015 0.22 +0.2
496,793 + MPMX19_05015 0.22 +0.4
496,793 + MPMX19_05015 0.22 -0.6
496,794 - MPMX19_05015 0.22 -0.5
496,794 - MPMX19_05015 0.22 +0.7
496,794 - MPMX19_05015 0.22 -0.8
496,794 - MPMX19_05015 0.22 -0.7
496,817 + MPMX19_05015 0.26 +0.1
496,817 + MPMX19_05015 0.26 +0.1
496,817 + MPMX19_05015 0.26 -1.4
496,817 + MPMX19_05015 0.26 -1.1
496,817 + MPMX19_05015 0.26 +0.1
496,818 - MPMX19_05015 0.26 -0.0
496,818 - MPMX19_05015 0.26 -1.0
496,818 - MPMX19_05015 0.26 +0.3
496,818 - MPMX19_05015 0.26 -0.9
496,818 - MPMX19_05015 0.26 +0.6
496,818 - MPMX19_05015 0.26 -0.2
496,818 - MPMX19_05015 0.26 +1.1
496,818 - MPMX19_05015 0.26 +1.2
497,006 + MPMX19_05015 0.60 +0.5
497,006 + MPMX19_05015 0.60 -0.2
497,006 + MPMX19_05015 0.60 -0.9
497,006 + MPMX19_05015 0.60 -1.0
497,007 - MPMX19_05015 0.61 +0.7
497,007 - MPMX19_05015 0.61 +0.7
497,007 - MPMX19_05015 0.61 -1.1
497,099 + MPMX19_05015 0.77 +0.5
497,100 - MPMX19_05015 0.77 +1.1
497,100 - MPMX19_05015 0.77 -0.6
497,328 + -0.2
497,328 + +0.7
497,328 + -0.5
497,328 + +0.9
497,328 + +0.6
497,328 + +1.6
497,328 + -0.1
497,329 - -1.2
497,329 - -0.4
497,329 - -0.1
497,329 - -0.2
497,329 - -2.1
497,823 + MPMX19_05016 0.65 +1.7
497,824 - MPMX19_05016 0.65 -1.7
497,824 - MPMX19_05016 0.65 -1.4
498,298 + -0.3
498,298 + -1.1
498,298 + +0.4
498,298 + +0.5
498,298 + -0.6
498,298 + +1.8
498,298 + -1.2
498,298 + -0.5
498,298 + -1.4
498,298 + -0.2
498,299 - -0.4
498,299 - -0.1
498,299 - +0.3
498,299 - -0.1
498,299 - -0.9
498,299 - -2.1
498,299 - -1.7
498,299 - +0.1
498,299 - -0.4
498,299 - -0.1
498,306 + +0.7
498,307 - +0.2
498,349 + -0.7
498,349 + -1.4
498,349 + -1.5
498,349 + +2.1
498,349 + -0.6
498,378 + +0.6
498,446 + -0.1
498,446 + -1.1
498,447 - -0.7
498,447 - +0.1
498,479 + -1.8
498,479 + -1.5
498,479 + +0.5
498,480 - +0.4
498,480 - -1.4
498,480 - -0.3
498,480 - +0.5
498,480 - -0.9
498,480 - -0.5
498,480 - +0.9
498,506 + MPMX19_05017 0.11 -1.2
498,506 + MPMX19_05017 0.11 -1.5
499,007 + MPMX19_05017 0.45 -1.6
499,007 + MPMX19_05017 0.45 -0.5

Or see this region's nucleotide sequence