Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05004 and MPMX19_05005 are separated by 67 nucleotides MPMX19_05005 and MPMX19_05006 are separated by 27 nucleotides MPMX19_05006 and MPMX19_05007 are separated by 271 nucleotides
MPMX19_05004: MPMX19_05004 - Glutathionyl-hydroquinone reductase YqjG, at 486,484 to 487,443
_05004
MPMX19_05005: MPMX19_05005 - hypothetical protein, at 487,511 to 487,888
_05005
MPMX19_05006: MPMX19_05006 - hypothetical protein, at 487,916 to 488,290
_05006
MPMX19_05007: MPMX19_05007 - hypothetical protein, at 488,562 to 490,556
_05007
Position (kb) 487
488 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 486.523 kb on + strand at 486.523 kb on + strand at 486.523 kb on + strand at 486.523 kb on + strand at 486.523 kb on + strand at 486.523 kb on + strand at 486.523 kb on + strand at 486.523 kb on + strand at 486.523 kb on + strand at 486.523 kb on + strand at 486.524 kb on - strand at 486.524 kb on - strand at 486.524 kb on - strand at 486.524 kb on - strand at 486.524 kb on - strand at 486.608 kb on - strand, within MPMX19_05004 at 486.628 kb on + strand, within MPMX19_05004 at 486.628 kb on + strand, within MPMX19_05004 at 486.796 kb on + strand, within MPMX19_05004 at 486.797 kb on - strand, within MPMX19_05004 at 486.797 kb on - strand, within MPMX19_05004 at 486.797 kb on - strand, within MPMX19_05004 at 486.797 kb on - strand, within MPMX19_05004 at 486.797 kb on - strand, within MPMX19_05004 at 486.797 kb on - strand, within MPMX19_05004 at 486.797 kb on - strand, within MPMX19_05004 at 486.797 kb on - strand, within MPMX19_05004 at 486.797 kb on - strand, within MPMX19_05004 at 486.805 kb on + strand, within MPMX19_05004 at 486.805 kb on + strand, within MPMX19_05004 at 486.805 kb on + strand, within MPMX19_05004 at 486.805 kb on + strand, within MPMX19_05004 at 486.805 kb on + strand, within MPMX19_05004 at 486.805 kb on + strand, within MPMX19_05004 at 486.805 kb on + strand, within MPMX19_05004 at 486.805 kb on + strand, within MPMX19_05004 at 486.805 kb on + strand, within MPMX19_05004 at 486.805 kb on + strand, within MPMX19_05004 at 486.805 kb on + strand, within MPMX19_05004 at 486.805 kb on + strand, within MPMX19_05004 at 486.805 kb on + strand, within MPMX19_05004 at 486.805 kb on + strand, within MPMX19_05004 at 486.806 kb on - strand, within MPMX19_05004 at 486.806 kb on - strand, within MPMX19_05004 at 486.806 kb on - strand, within MPMX19_05004 at 486.806 kb on - strand, within MPMX19_05004 at 486.806 kb on - strand, within MPMX19_05004 at 486.806 kb on - strand, within MPMX19_05004 at 486.806 kb on - strand, within MPMX19_05004 at 486.806 kb on - strand, within MPMX19_05004 at 486.806 kb on - strand, within MPMX19_05004 at 486.806 kb on - strand, within MPMX19_05004 at 486.826 kb on + strand, within MPMX19_05004 at 486.826 kb on + strand, within MPMX19_05004 at 486.958 kb on + strand, within MPMX19_05004 at 486.959 kb on - strand, within MPMX19_05004 at 487.006 kb on + strand, within MPMX19_05004 at 487.006 kb on + strand, within MPMX19_05004 at 487.006 kb on + strand, within MPMX19_05004 at 487.006 kb on + strand, within MPMX19_05004 at 487.006 kb on + strand, within MPMX19_05004 at 487.006 kb on + strand, within MPMX19_05004 at 487.006 kb on + strand, within MPMX19_05004 at 487.007 kb on - strand, within MPMX19_05004 at 487.007 kb on - strand, within MPMX19_05004 at 487.007 kb on - strand, within MPMX19_05004 at 487.030 kb on + strand, within MPMX19_05004 at 487.030 kb on + strand, within MPMX19_05004 at 487.030 kb on + strand, within MPMX19_05004 at 487.030 kb on + strand, within MPMX19_05004 at 487.030 kb on + strand, within MPMX19_05004 at 487.030 kb on + strand, within MPMX19_05004 at 487.030 kb on + strand, within MPMX19_05004 at 487.030 kb on + strand, within MPMX19_05004 at 487.031 kb on - strand, within MPMX19_05004 at 487.031 kb on - strand, within MPMX19_05004 at 487.031 kb on - strand, within MPMX19_05004 at 487.031 kb on - strand, within MPMX19_05004 at 487.031 kb on - strand, within MPMX19_05004 at 487.031 kb on - strand, within MPMX19_05004 at 487.031 kb on - strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.205 kb on - strand, within MPMX19_05004 at 487.205 kb on - strand, within MPMX19_05004 at 487.205 kb on - strand, within MPMX19_05004 at 487.205 kb on - strand, within MPMX19_05004 at 487.205 kb on - strand, within MPMX19_05004 at 487.205 kb on - strand, within MPMX19_05004 at 487.205 kb on - strand, within MPMX19_05004 at 487.205 kb on - strand, within MPMX19_05004 at 487.247 kb on - strand, within MPMX19_05004 at 487.247 kb on - strand, within MPMX19_05004 at 487.264 kb on + strand, within MPMX19_05004 at 487.265 kb on - strand, within MPMX19_05004 at 487.279 kb on + strand, within MPMX19_05004 at 487.279 kb on + strand, within MPMX19_05004 at 487.279 kb on + strand, within MPMX19_05004 at 487.279 kb on + strand, within MPMX19_05004 at 487.279 kb on + strand, within MPMX19_05004 at 487.280 kb on - strand, within MPMX19_05004 at 487.280 kb on - strand, within MPMX19_05004 at 487.333 kb on + strand, within MPMX19_05004 at 487.333 kb on + strand, within MPMX19_05004 at 487.333 kb on + strand, within MPMX19_05004 at 487.333 kb on + strand, within MPMX19_05004 at 487.333 kb on + strand, within MPMX19_05004 at 487.333 kb on + strand, within MPMX19_05004 at 487.333 kb on + strand, within MPMX19_05004 at 487.333 kb on + strand, within MPMX19_05004 at 487.333 kb on + strand, within MPMX19_05004 at 487.334 kb on - strand, within MPMX19_05004 at 487.334 kb on - strand, within MPMX19_05004 at 487.334 kb on - strand, within MPMX19_05004 at 487.334 kb on - strand, within MPMX19_05004 at 487.334 kb on - strand, within MPMX19_05004 at 487.334 kb on - strand, within MPMX19_05004 at 487.334 kb on - strand, within MPMX19_05004 at 487.334 kb on - strand, within MPMX19_05004 at 487.334 kb on - strand, within MPMX19_05004 at 487.336 kb on + strand, within MPMX19_05004 at 487.337 kb on - strand, within MPMX19_05004 at 487.337 kb on - strand, within MPMX19_05004 at 487.337 kb on - strand, within MPMX19_05004 at 487.516 kb on + strand at 487.516 kb on + strand at 487.516 kb on + strand at 487.516 kb on + strand at 487.516 kb on + strand at 487.516 kb on + strand at 487.516 kb on + strand at 487.516 kb on + strand at 487.516 kb on + strand at 487.516 kb on + strand at 487.517 kb on - strand at 487.517 kb on - strand at 487.517 kb on - strand at 487.517 kb on - strand at 487.517 kb on - strand at 487.517 kb on - strand at 487.517 kb on - strand at 487.517 kb on - strand at 487.517 kb on - strand at 487.652 kb on + strand, within MPMX19_05005 at 487.727 kb on + strand, within MPMX19_05005 at 487.728 kb on - strand, within MPMX19_05005 at 487.728 kb on - strand, within MPMX19_05005 at 487.728 kb on - strand, within MPMX19_05005 at 487.763 kb on + strand, within MPMX19_05005 at 487.763 kb on + strand, within MPMX19_05005 at 487.764 kb on - strand, within MPMX19_05005 at 487.764 kb on - strand, within MPMX19_05005 at 487.772 kb on + strand, within MPMX19_05005 at 487.773 kb on - strand, within MPMX19_05005 at 487.773 kb on - strand, within MPMX19_05005 at 487.773 kb on - strand, within MPMX19_05005 at 487.799 kb on + strand, within MPMX19_05005 at 487.799 kb on + strand, within MPMX19_05005 at 487.800 kb on - strand, within MPMX19_05005 at 487.898 kb on + strand at 487.898 kb on + strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.927 kb on - strand at 487.927 kb on - strand at 487.927 kb on - strand at 487.927 kb on - strand at 487.927 kb on - strand at 487.927 kb on - strand at 487.927 kb on - strand at 487.927 kb on - strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.296 kb on + strand at 488.296 kb on + strand at 488.296 kb on + strand at 488.296 kb on + strand at 488.297 kb on - strand at 488.330 kb on + strand at 488.330 kb on + strand at 488.331 kb on - strand at 488.356 kb on + strand at 488.357 kb on - strand at 488.357 kb on - strand at 488.357 kb on - strand at 488.510 kb on - strand at 488.510 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 486,523 + +0.2 486,523 + +0.8 486,523 + +0.7 486,523 + -1.2 486,523 + -1.2 486,523 + +1.2 486,523 + +0.4 486,523 + +0.9 486,523 + +0.7 486,523 + +1.3 486,524 - -1.5 486,524 - -1.5 486,524 - -0.6 486,524 - -1.6 486,524 - +0.3 486,608 - MPMX19_05004 0.13 -0.9 486,628 + MPMX19_05004 0.15 -1.5 486,628 + MPMX19_05004 0.15 -0.8 486,796 + MPMX19_05004 0.33 +0.1 486,797 - MPMX19_05004 0.33 -0.3 486,797 - MPMX19_05004 0.33 -0.7 486,797 - MPMX19_05004 0.33 -1.6 486,797 - MPMX19_05004 0.33 -0.4 486,797 - MPMX19_05004 0.33 -0.5 486,797 - MPMX19_05004 0.33 -1.2 486,797 - MPMX19_05004 0.33 +0.1 486,797 - MPMX19_05004 0.33 +0.4 486,797 - MPMX19_05004 0.33 +0.9 486,805 + MPMX19_05004 0.33 -0.9 486,805 + MPMX19_05004 0.33 -0.9 486,805 + MPMX19_05004 0.33 +1.6 486,805 + MPMX19_05004 0.33 -0.6 486,805 + MPMX19_05004 0.33 -0.9 486,805 + MPMX19_05004 0.33 -0.2 486,805 + MPMX19_05004 0.33 +0.5 486,805 + MPMX19_05004 0.33 -2.2 486,805 + MPMX19_05004 0.33 -0.6 486,805 + MPMX19_05004 0.33 -0.1 486,805 + MPMX19_05004 0.33 +0.1 486,805 + MPMX19_05004 0.33 +0.0 486,805 + MPMX19_05004 0.33 +0.9 486,805 + MPMX19_05004 0.33 +0.5 486,806 - MPMX19_05004 0.34 -1.4 486,806 - MPMX19_05004 0.34 +0.5 486,806 - MPMX19_05004 0.34 -0.1 486,806 - MPMX19_05004 0.34 -1.0 486,806 - MPMX19_05004 0.34 +1.1 486,806 - MPMX19_05004 0.34 -1.7 486,806 - MPMX19_05004 0.34 -0.5 486,806 - MPMX19_05004 0.34 -0.5 486,806 - MPMX19_05004 0.34 -1.2 486,806 - MPMX19_05004 0.34 -1.1 486,826 + MPMX19_05004 0.36 -1.1 486,826 + MPMX19_05004 0.36 -1.4 486,958 + MPMX19_05004 0.49 -0.8 486,959 - MPMX19_05004 0.49 +0.2 487,006 + MPMX19_05004 0.54 -1.3 487,006 + MPMX19_05004 0.54 +1.5 487,006 + MPMX19_05004 0.54 -2.1 487,006 + MPMX19_05004 0.54 +0.1 487,006 + MPMX19_05004 0.54 -1.7 487,006 + MPMX19_05004 0.54 +0.1 487,006 + MPMX19_05004 0.54 -1.1 487,007 - MPMX19_05004 0.54 +0.5 487,007 - MPMX19_05004 0.54 -1.1 487,007 - MPMX19_05004 0.54 -0.4 487,030 + MPMX19_05004 0.57 -2.3 487,030 + MPMX19_05004 0.57 -1.2 487,030 + MPMX19_05004 0.57 -0.9 487,030 + MPMX19_05004 0.57 -1.5 487,030 + MPMX19_05004 0.57 +0.9 487,030 + MPMX19_05004 0.57 -0.5 487,030 + MPMX19_05004 0.57 +0.5 487,030 + MPMX19_05004 0.57 -1.6 487,031 - MPMX19_05004 0.57 -0.7 487,031 - MPMX19_05004 0.57 -1.2 487,031 - MPMX19_05004 0.57 -0.4 487,031 - MPMX19_05004 0.57 -0.0 487,031 - MPMX19_05004 0.57 -0.7 487,031 - MPMX19_05004 0.57 -1.1 487,031 - MPMX19_05004 0.57 +0.9 487,063 + MPMX19_05004 0.60 -0.5 487,063 + MPMX19_05004 0.60 -0.9 487,063 + MPMX19_05004 0.60 -1.1 487,063 + MPMX19_05004 0.60 -0.4 487,063 + MPMX19_05004 0.60 -1.1 487,063 + MPMX19_05004 0.60 +0.2 487,063 + MPMX19_05004 0.60 +0.5 487,063 + MPMX19_05004 0.60 -0.2 487,063 + MPMX19_05004 0.60 -1.2 487,063 + MPMX19_05004 0.60 -0.8 487,063 + MPMX19_05004 0.60 -1.4 487,063 + MPMX19_05004 0.60 +1.8 487,063 + MPMX19_05004 0.60 -0.2 487,063 + MPMX19_05004 0.60 -0.7 487,063 + MPMX19_05004 0.60 -0.5 487,063 + MPMX19_05004 0.60 -1.4 487,064 - MPMX19_05004 0.60 -0.7 487,064 - MPMX19_05004 0.60 +0.0 487,064 - MPMX19_05004 0.60 -1.0 487,064 - MPMX19_05004 0.60 +0.7 487,064 - MPMX19_05004 0.60 -0.5 487,064 - MPMX19_05004 0.60 -1.4 487,064 - MPMX19_05004 0.60 -1.1 487,064 - MPMX19_05004 0.60 +0.1 487,064 - MPMX19_05004 0.60 -1.7 487,064 - MPMX19_05004 0.60 +0.5 487,064 - MPMX19_05004 0.60 +0.3 487,064 - MPMX19_05004 0.60 -0.2 487,064 - MPMX19_05004 0.60 -0.1 487,205 - MPMX19_05004 0.75 +0.1 487,205 - MPMX19_05004 0.75 +0.5 487,205 - MPMX19_05004 0.75 -0.1 487,205 - MPMX19_05004 0.75 +1.1 487,205 - MPMX19_05004 0.75 +0.2 487,205 - MPMX19_05004 0.75 -0.2 487,205 - MPMX19_05004 0.75 +0.4 487,205 - MPMX19_05004 0.75 -2.2 487,247 - MPMX19_05004 0.79 -1.4 487,247 - MPMX19_05004 0.79 -0.7 487,264 + MPMX19_05004 0.81 +0.6 487,265 - MPMX19_05004 0.81 -0.7 487,279 + MPMX19_05004 0.83 +0.1 487,279 + MPMX19_05004 0.83 -0.9 487,279 + MPMX19_05004 0.83 +0.9 487,279 + MPMX19_05004 0.83 +0.6 487,279 + MPMX19_05004 0.83 -1.1 487,280 - MPMX19_05004 0.83 -0.9 487,280 - MPMX19_05004 0.83 -0.4 487,333 + MPMX19_05004 0.88 -0.6 487,333 + MPMX19_05004 0.88 -0.5 487,333 + MPMX19_05004 0.88 +1.1 487,333 + MPMX19_05004 0.88 -0.5 487,333 + MPMX19_05004 0.88 +0.1 487,333 + MPMX19_05004 0.88 +1.1 487,333 + MPMX19_05004 0.88 -0.1 487,333 + MPMX19_05004 0.88 -0.8 487,333 + MPMX19_05004 0.88 -1.4 487,334 - MPMX19_05004 0.89 +1.3 487,334 - MPMX19_05004 0.89 -1.2 487,334 - MPMX19_05004 0.89 -0.5 487,334 - MPMX19_05004 0.89 -0.6 487,334 - MPMX19_05004 0.89 -0.9 487,334 - MPMX19_05004 0.89 +0.3 487,334 - MPMX19_05004 0.89 -1.3 487,334 - MPMX19_05004 0.89 -1.7 487,334 - MPMX19_05004 0.89 -0.8 487,336 + MPMX19_05004 0.89 +0.4 487,337 - MPMX19_05004 0.89 -0.5 487,337 - MPMX19_05004 0.89 -0.5 487,337 - MPMX19_05004 0.89 -0.8 487,516 + -0.2 487,516 + +0.5 487,516 + +0.6 487,516 + -0.4 487,516 + -1.6 487,516 + -0.7 487,516 + -0.3 487,516 + -1.5 487,516 + -0.4 487,516 + +0.3 487,517 - +1.1 487,517 - +2.1 487,517 - -0.8 487,517 - -0.8 487,517 - +0.8 487,517 - -0.5 487,517 - -2.1 487,517 - -2.3 487,517 - -1.1 487,652 + MPMX19_05005 0.37 +2.3 487,727 + MPMX19_05005 0.57 -0.7 487,728 - MPMX19_05005 0.57 +0.6 487,728 - MPMX19_05005 0.57 -0.7 487,728 - MPMX19_05005 0.57 -1.0 487,763 + MPMX19_05005 0.67 -0.2 487,763 + MPMX19_05005 0.67 +1.0 487,764 - MPMX19_05005 0.67 -0.5 487,764 - MPMX19_05005 0.67 -0.7 487,772 + MPMX19_05005 0.69 +1.9 487,773 - MPMX19_05005 0.69 -0.7 487,773 - MPMX19_05005 0.69 -0.1 487,773 - MPMX19_05005 0.69 -0.9 487,799 + MPMX19_05005 0.76 -1.9 487,799 + MPMX19_05005 0.76 -1.3 487,800 - MPMX19_05005 0.76 +0.2 487,898 + +1.4 487,898 + -0.2 487,926 + -0.7 487,926 + -0.3 487,926 + -0.1 487,926 + -0.2 487,926 + -0.8 487,926 + -0.4 487,926 + -0.1 487,926 + -1.7 487,926 + -1.1 487,926 + -0.6 487,927 - -2.2 487,927 - -0.0 487,927 - +0.6 487,927 - -0.5 487,927 - -0.4 487,927 - +0.1 487,927 - -0.7 487,927 - -0.4 488,259 + +0.1 488,259 + -0.5 488,259 + -1.7 488,259 + +0.7 488,259 + +0.5 488,259 + +1.1 488,259 + -1.4 488,259 + -3.0 488,259 + -0.2 488,259 + +0.5 488,259 + +0.0 488,259 + -0.1 488,259 + -1.1 488,259 + -0.7 488,259 + +0.7 488,259 + -0.1 488,259 + -1.3 488,259 + +0.0 488,259 + -1.6 488,259 + -0.2 488,259 + -0.5 488,259 + -1.1 488,259 + -1.0 488,259 + +1.3 488,260 - -0.8 488,260 - -1.2 488,260 - -1.5 488,260 - -0.6 488,260 - +0.5 488,260 - -1.7 488,260 - +1.1 488,260 - +1.0 488,260 - -0.2 488,260 - -1.0 488,260 - -0.3 488,260 - +0.4 488,296 + -0.6 488,296 + +2.1 488,296 + -1.0 488,296 + -1.2 488,297 - -0.7 488,330 + -1.2 488,330 + -2.1 488,331 - -1.1 488,356 + -0.4 488,357 - +0.5 488,357 - -0.8 488,357 - +1.6 488,510 - -0.9 488,510 - -1.3
Or see this region's nucleotide sequence