Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04991

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04990 and MPMX19_04991 are separated by 137 nucleotidesMPMX19_04991 and MPMX19_04992 are separated by 601 nucleotides MPMX19_04990: MPMX19_04990 - Hydrogen peroxide-inducible genes activator, at 468,553 to 469,467 _04990 MPMX19_04991: MPMX19_04991 - hypothetical protein, at 469,605 to 470,228 _04991 MPMX19_04992: MPMX19_04992 - Chaperone protein ClpB, at 470,830 to 473,514 _04992 Position (kb) 469 470 471Strain fitness (log2 ratio) -2 -1 0 1at 468.753 kb on + strand, within MPMX19_04990at 468.753 kb on + strand, within MPMX19_04990at 468.753 kb on + strand, within MPMX19_04990at 468.753 kb on + strand, within MPMX19_04990at 468.753 kb on + strand, within MPMX19_04990at 468.753 kb on + strand, within MPMX19_04990at 468.753 kb on + strand, within MPMX19_04990at 468.754 kb on - strand, within MPMX19_04990at 468.755 kb on + strand, within MPMX19_04990at 468.756 kb on - strand, within MPMX19_04990at 468.756 kb on - strand, within MPMX19_04990at 469.891 kb on + strand, within MPMX19_04991at 469.891 kb on + strand, within MPMX19_04991at 469.903 kb on + strand, within MPMX19_04991at 469.903 kb on + strand, within MPMX19_04991at 469.903 kb on + strand, within MPMX19_04991at 469.903 kb on + strand, within MPMX19_04991at 469.903 kb on + strand, within MPMX19_04991at 469.903 kb on + strand, within MPMX19_04991at 469.903 kb on + strand, within MPMX19_04991at 469.903 kb on + strand, within MPMX19_04991at 469.903 kb on + strand, within MPMX19_04991at 469.903 kb on + strand, within MPMX19_04991at 469.903 kb on + strand, within MPMX19_04991at 469.903 kb on + strand, within MPMX19_04991at 469.903 kb on + strand, within MPMX19_04991at 469.903 kb on + strand, within MPMX19_04991at 469.903 kb on + strand, within MPMX19_04991at 469.903 kb on + strand, within MPMX19_04991at 469.903 kb on + strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.904 kb on - strand, within MPMX19_04991at 469.906 kb on + strand, within MPMX19_04991at 469.906 kb on + strand, within MPMX19_04991at 469.906 kb on + strand, within MPMX19_04991at 469.906 kb on + strand, within MPMX19_04991at 469.906 kb on + strand, within MPMX19_04991at 469.906 kb on + strand, within MPMX19_04991at 469.906 kb on + strand, within MPMX19_04991at 469.906 kb on + strand, within MPMX19_04991at 469.906 kb on + strand, within MPMX19_04991at 469.906 kb on + strand, within MPMX19_04991at 469.906 kb on + strand, within MPMX19_04991at 469.906 kb on + strand, within MPMX19_04991at 469.906 kb on + strand, within MPMX19_04991at 469.906 kb on + strand, within MPMX19_04991at 469.906 kb on + strand, within MPMX19_04991at 469.906 kb on + strand, within MPMX19_04991at 469.906 kb on + strand, within MPMX19_04991at 469.907 kb on - strand, within MPMX19_04991at 469.907 kb on - strand, within MPMX19_04991at 469.907 kb on - strand, within MPMX19_04991at 469.907 kb on - strand, within MPMX19_04991at 469.907 kb on - strand, within MPMX19_04991at 469.907 kb on - strand, within MPMX19_04991at 469.907 kb on - strand, within MPMX19_04991at 469.958 kb on - strand, within MPMX19_04991at 469.958 kb on - strand, within MPMX19_04991at 469.984 kb on + strand, within MPMX19_04991at 469.984 kb on + strand, within MPMX19_04991at 469.985 kb on - strand, within MPMX19_04991at 470.007 kb on + strand, within MPMX19_04991at 470.008 kb on - strand, within MPMX19_04991at 470.008 kb on - strand, within MPMX19_04991at 470.029 kb on + strand, within MPMX19_04991at 470.029 kb on + strand, within MPMX19_04991at 470.030 kb on - strand, within MPMX19_04991at 470.030 kb on - strand, within MPMX19_04991at 470.030 kb on - strand, within MPMX19_04991at 470.030 kb on - strand, within MPMX19_04991at 470.255 kb on + strandat 470.256 kb on - strandat 470.256 kb on - strandat 470.281 kb on + strandat 470.281 kb on + strandat 470.293 kb on + strandat 470.293 kb on + strandat 470.293 kb on + strandat 470.293 kb on + strandat 470.293 kb on + strandat 470.294 kb on - strandat 470.294 kb on - strandat 470.294 kb on - strandat 470.294 kb on - strandat 470.294 kb on - strandat 470.294 kb on - strandat 470.294 kb on - strandat 470.505 kb on + strandat 470.540 kb on + strandat 470.733 kb on - strandat 471.082 kb on + strandat 471.082 kb on + strandat 471.082 kb on + strandat 471.082 kb on + strandat 471.082 kb on + strandat 471.082 kb on + strandat 471.082 kb on + strandat 471.082 kb on + strandat 471.082 kb on + strandat 471.082 kb on + strandat 471.082 kb on + strandat 471.082 kb on + strandat 471.082 kb on + strandat 471.082 kb on + strandat 471.082 kb on + strandat 471.082 kb on + strandat 471.082 kb on + strandat 471.082 kb on + strandat 471.083 kb on - strandat 471.083 kb on - strandat 471.083 kb on - strandat 471.083 kb on - strandat 471.083 kb on - strandat 471.083 kb on - strandat 471.083 kb on - strandat 471.083 kb on - strandat 471.083 kb on - strandat 471.083 kb on - strandat 471.083 kb on - strandat 471.083 kb on - strandat 471.083 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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468,753 + MPMX19_04990 0.22 -0.7
468,753 + MPMX19_04990 0.22 -1.7
468,753 + MPMX19_04990 0.22 -2.1
468,753 + MPMX19_04990 0.22 +0.6
468,753 + MPMX19_04990 0.22 +0.5
468,753 + MPMX19_04990 0.22 +0.5
468,753 + MPMX19_04990 0.22 -0.7
468,754 - MPMX19_04990 0.22 -1.2
468,755 + MPMX19_04990 0.22 -0.1
468,756 - MPMX19_04990 0.22 -0.5
468,756 - MPMX19_04990 0.22 -1.7
469,891 + MPMX19_04991 0.46 -1.1
469,891 + MPMX19_04991 0.46 -0.8
469,903 + MPMX19_04991 0.48 +0.1
469,903 + MPMX19_04991 0.48 +0.3
469,903 + MPMX19_04991 0.48 +1.6
469,903 + MPMX19_04991 0.48 +0.9
469,903 + MPMX19_04991 0.48 -0.4
469,903 + MPMX19_04991 0.48 +1.1
469,903 + MPMX19_04991 0.48 +0.6
469,903 + MPMX19_04991 0.48 +0.5
469,903 + MPMX19_04991 0.48 -0.2
469,903 + MPMX19_04991 0.48 -0.3
469,903 + MPMX19_04991 0.48 +0.1
469,903 + MPMX19_04991 0.48 -1.2
469,903 + MPMX19_04991 0.48 -0.3
469,903 + MPMX19_04991 0.48 -0.3
469,903 + MPMX19_04991 0.48 -0.8
469,903 + MPMX19_04991 0.48 -0.5
469,903 + MPMX19_04991 0.48 +1.5
469,904 - MPMX19_04991 0.48 +0.3
469,904 - MPMX19_04991 0.48 -0.5
469,904 - MPMX19_04991 0.48 +0.5
469,904 - MPMX19_04991 0.48 -0.5
469,904 - MPMX19_04991 0.48 +0.7
469,904 - MPMX19_04991 0.48 -0.7
469,904 - MPMX19_04991 0.48 -1.0
469,904 - MPMX19_04991 0.48 -1.7
469,904 - MPMX19_04991 0.48 +0.3
469,904 - MPMX19_04991 0.48 +0.5
469,904 - MPMX19_04991 0.48 +0.0
469,904 - MPMX19_04991 0.48 -0.8
469,904 - MPMX19_04991 0.48 -0.1
469,904 - MPMX19_04991 0.48 -0.7
469,904 - MPMX19_04991 0.48 -1.2
469,904 - MPMX19_04991 0.48 -1.7
469,904 - MPMX19_04991 0.48 +0.4
469,904 - MPMX19_04991 0.48 -2.1
469,904 - MPMX19_04991 0.48 -0.2
469,904 - MPMX19_04991 0.48 -0.7
469,904 - MPMX19_04991 0.48 -0.4
469,904 - MPMX19_04991 0.48 +0.5
469,904 - MPMX19_04991 0.48 -0.3
469,904 - MPMX19_04991 0.48 -1.7
469,904 - MPMX19_04991 0.48 +0.9
469,904 - MPMX19_04991 0.48 -0.9
469,904 - MPMX19_04991 0.48 +0.7
469,906 + MPMX19_04991 0.48 -0.2
469,906 + MPMX19_04991 0.48 -0.4
469,906 + MPMX19_04991 0.48 +1.0
469,906 + MPMX19_04991 0.48 -0.6
469,906 + MPMX19_04991 0.48 -1.2
469,906 + MPMX19_04991 0.48 -0.2
469,906 + MPMX19_04991 0.48 -0.2
469,906 + MPMX19_04991 0.48 -1.6
469,906 + MPMX19_04991 0.48 +1.1
469,906 + MPMX19_04991 0.48 -1.9
469,906 + MPMX19_04991 0.48 -0.0
469,906 + MPMX19_04991 0.48 -1.2
469,906 + MPMX19_04991 0.48 -2.3
469,906 + MPMX19_04991 0.48 +0.7
469,906 + MPMX19_04991 0.48 -0.2
469,906 + MPMX19_04991 0.48 -1.0
469,906 + MPMX19_04991 0.48 -2.1
469,907 - MPMX19_04991 0.48 +0.5
469,907 - MPMX19_04991 0.48 -0.9
469,907 - MPMX19_04991 0.48 +0.2
469,907 - MPMX19_04991 0.48 -0.9
469,907 - MPMX19_04991 0.48 -1.4
469,907 - MPMX19_04991 0.48 -1.2
469,907 - MPMX19_04991 0.48 +0.8
469,958 - MPMX19_04991 0.57 -0.4
469,958 - MPMX19_04991 0.57 -1.6
469,984 + MPMX19_04991 0.61 +1.5
469,984 + MPMX19_04991 0.61 +0.1
469,985 - MPMX19_04991 0.61 -0.5
470,007 + MPMX19_04991 0.64 +1.1
470,008 - MPMX19_04991 0.65 -2.1
470,008 - MPMX19_04991 0.65 +0.5
470,029 + MPMX19_04991 0.68 -0.2
470,029 + MPMX19_04991 0.68 +0.1
470,030 - MPMX19_04991 0.68 -0.2
470,030 - MPMX19_04991 0.68 -0.4
470,030 - MPMX19_04991 0.68 -0.1
470,030 - MPMX19_04991 0.68 -1.2
470,255 + -2.1
470,256 - +1.0
470,256 - +0.5
470,281 + -2.4
470,281 + +1.5
470,293 + -1.5
470,293 + -1.4
470,293 + +1.5
470,293 + -0.5
470,293 + -1.6
470,294 - +0.0
470,294 - -0.9
470,294 - +0.1
470,294 - -1.2
470,294 - -1.6
470,294 - -0.0
470,294 - +1.6
470,505 + -1.5
470,540 + -1.1
470,733 - +0.5
471,082 + -2.6
471,082 + -1.2
471,082 + +1.4
471,082 + -1.3
471,082 + -0.3
471,082 + +0.5
471,082 + -1.8
471,082 + +0.7
471,082 + +0.8
471,082 + +0.1
471,082 + +1.5
471,082 + -1.5
471,082 + +0.3
471,082 + -1.1
471,082 + -0.1
471,082 + -0.2
471,082 + -1.1
471,082 + -0.4
471,083 - -1.7
471,083 - -1.1
471,083 - -0.4
471,083 - +0.0
471,083 - -1.0
471,083 - -0.5
471,083 - +1.5
471,083 - -1.6
471,083 - -1.0
471,083 - +0.8
471,083 - +0.1
471,083 - -2.0
471,083 - -0.3

Or see this region's nucleotide sequence