Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04972 and MPMX19_04973 are separated by 37 nucleotides MPMX19_04973 and MPMX19_04974 are separated by 11 nucleotides MPMX19_04974 and MPMX19_04975 overlap by 11 nucleotides MPMX19_04975 and MPMX19_04976 are separated by 15 nucleotides
MPMX19_04972: MPMX19_04972 - hypothetical protein, at 442,395 to 443,723
_04972
MPMX19_04973: MPMX19_04973 - hypothetical protein, at 443,761 to 444,159
_04973
MPMX19_04974: MPMX19_04974 - Nitrobenzene nitroreductase, at 444,171 to 444,872
_04974
MPMX19_04975: MPMX19_04975 - hypothetical protein, at 444,862 to 445,359
_04975
MPMX19_04976: MPMX19_04976 - hypothetical protein, at 445,375 to 446,325
_04976
Position (kb) 444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 443.268 kb on + strand, within MPMX19_04972 at 443.268 kb on + strand, within MPMX19_04972 at 443.269 kb on - strand, within MPMX19_04972 at 443.269 kb on - strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.287 kb on - strand, within MPMX19_04972 at 443.287 kb on - strand, within MPMX19_04972 at 443.287 kb on - strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.505 kb on - strand, within MPMX19_04972 at 443.505 kb on - strand, within MPMX19_04972 at 443.621 kb on + strand at 443.683 kb on + strand at 443.684 kb on - strand at 443.748 kb on + strand at 443.768 kb on + strand at 443.768 kb on + strand at 443.768 kb on + strand at 443.769 kb on - strand at 443.777 kb on + strand at 443.777 kb on + strand at 444.043 kb on + strand, within MPMX19_04973 at 444.043 kb on + strand, within MPMX19_04973 at 444.043 kb on + strand, within MPMX19_04973 at 444.043 kb on + strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.046 kb on - strand, within MPMX19_04973 at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.158 kb on - strand at 444.158 kb on - strand at 444.158 kb on - strand at 444.329 kb on - strand, within MPMX19_04974 at 444.329 kb on - strand, within MPMX19_04974 at 444.329 kb on - strand, within MPMX19_04974 at 444.544 kb on + strand, within MPMX19_04974 at 444.545 kb on - strand, within MPMX19_04974 at 444.545 kb on - strand, within MPMX19_04974 at 444.580 kb on + strand, within MPMX19_04974 at 444.580 kb on + strand, within MPMX19_04974 at 444.581 kb on - strand, within MPMX19_04974 at 444.581 kb on - strand, within MPMX19_04974 at 444.581 kb on - strand, within MPMX19_04974 at 444.605 kb on - strand, within MPMX19_04974 at 444.605 kb on - strand, within MPMX19_04974 at 444.605 kb on - strand, within MPMX19_04974 at 444.607 kb on + strand, within MPMX19_04974 at 444.607 kb on + strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.613 kb on + strand, within MPMX19_04974 at 444.614 kb on - strand, within MPMX19_04974 at 444.614 kb on - strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.790 kb on - strand, within MPMX19_04974 at 444.790 kb on - strand, within MPMX19_04974 at 444.790 kb on - strand, within MPMX19_04974 at 445.094 kb on + strand, within MPMX19_04975 at 445.095 kb on - strand, within MPMX19_04975 at 445.095 kb on - strand, within MPMX19_04975 at 445.136 kb on + strand, within MPMX19_04975 at 445.136 kb on + strand, within MPMX19_04975 at 445.136 kb on + strand, within MPMX19_04975 at 445.137 kb on - strand, within MPMX19_04975 at 445.137 kb on - strand, within MPMX19_04975 at 445.277 kb on + strand, within MPMX19_04975 at 445.277 kb on + strand, within MPMX19_04975 at 445.278 kb on - strand, within MPMX19_04975 at 445.278 kb on - strand, within MPMX19_04975 at 445.278 kb on - strand, within MPMX19_04975 at 445.337 kb on + strand at 445.337 kb on + strand at 445.372 kb on + strand at 445.372 kb on + strand at 445.372 kb on + strand at 445.372 kb on + strand at 445.372 kb on + strand at 445.372 kb on + strand at 445.372 kb on + strand at 445.373 kb on - strand at 445.373 kb on - strand at 445.373 kb on - strand at 445.373 kb on - strand at 445.373 kb on - strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.376 kb on + strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.377 kb on - strand at 445.396 kb on + strand at 445.397 kb on - strand at 445.490 kb on + strand, within MPMX19_04976 at 445.490 kb on + strand, within MPMX19_04976 at 445.490 kb on + strand, within MPMX19_04976 at 445.490 kb on + strand, within MPMX19_04976 at 445.490 kb on + strand, within MPMX19_04976 at 445.491 kb on - strand, within MPMX19_04976 at 445.491 kb on - strand, within MPMX19_04976 at 445.491 kb on - strand, within MPMX19_04976 at 445.784 kb on + strand, within MPMX19_04976 at 445.784 kb on + strand, within MPMX19_04976 at 445.784 kb on + strand, within MPMX19_04976 at 445.784 kb on + strand, within MPMX19_04976 at 445.784 kb on + strand, within MPMX19_04976 at 445.784 kb on + strand, within MPMX19_04976 at 445.784 kb on + strand, within MPMX19_04976 at 445.784 kb on + strand, within MPMX19_04976 at 445.785 kb on - strand, within MPMX19_04976 at 445.785 kb on - strand, within MPMX19_04976 at 445.785 kb on - strand, within MPMX19_04976
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 443,268 + MPMX19_04972 0.66 -1.1 443,268 + MPMX19_04972 0.66 -0.5 443,269 - MPMX19_04972 0.66 -1.5 443,269 - MPMX19_04972 0.66 -1.2 443,286 + MPMX19_04972 0.67 -1.0 443,286 + MPMX19_04972 0.67 -0.7 443,286 + MPMX19_04972 0.67 -1.1 443,286 + MPMX19_04972 0.67 -0.4 443,286 + MPMX19_04972 0.67 -2.1 443,286 + MPMX19_04972 0.67 -1.1 443,286 + MPMX19_04972 0.67 -0.7 443,287 - MPMX19_04972 0.67 -1.2 443,287 - MPMX19_04972 0.67 -1.0 443,287 - MPMX19_04972 0.67 +0.1 443,457 + MPMX19_04972 0.80 -1.1 443,457 + MPMX19_04972 0.80 +0.8 443,457 + MPMX19_04972 0.80 -0.6 443,457 + MPMX19_04972 0.80 -1.7 443,457 + MPMX19_04972 0.80 +0.5 443,458 - MPMX19_04972 0.80 -2.1 443,458 - MPMX19_04972 0.80 -0.8 443,458 - MPMX19_04972 0.80 -0.5 443,458 - MPMX19_04972 0.80 +0.8 443,458 - MPMX19_04972 0.80 -0.5 443,458 - MPMX19_04972 0.80 -1.1 443,458 - MPMX19_04972 0.80 +0.9 443,505 - MPMX19_04972 0.84 +0.0 443,505 - MPMX19_04972 0.84 -0.9 443,621 + -1.1 443,683 + +0.5 443,684 - -1.4 443,748 + +0.8 443,768 + -1.2 443,768 + -1.2 443,768 + +1.3 443,769 - -0.5 443,777 + -0.4 443,777 + +0.7 444,043 + MPMX19_04973 0.71 -1.1 444,043 + MPMX19_04973 0.71 -0.0 444,043 + MPMX19_04973 0.71 -0.9 444,043 + MPMX19_04973 0.71 -1.0 444,044 - MPMX19_04973 0.71 -1.0 444,044 - MPMX19_04973 0.71 +1.1 444,044 - MPMX19_04973 0.71 -0.7 444,044 - MPMX19_04973 0.71 +0.8 444,044 - MPMX19_04973 0.71 -1.2 444,044 - MPMX19_04973 0.71 -0.9 444,044 - MPMX19_04973 0.71 -0.5 444,044 - MPMX19_04973 0.71 -1.5 444,044 - MPMX19_04973 0.71 +0.1 444,044 - MPMX19_04973 0.71 -0.2 444,044 - MPMX19_04973 0.71 -1.4 444,046 - MPMX19_04973 0.71 -1.4 444,157 + -0.7 444,157 + -1.5 444,157 + +2.1 444,157 + +0.1 444,157 + -0.9 444,157 + -1.0 444,157 + -0.5 444,157 + +0.5 444,157 + +2.1 444,157 + -0.5 444,158 - -1.7 444,158 - -0.8 444,158 - +0.8 444,329 - MPMX19_04974 0.23 -0.6 444,329 - MPMX19_04974 0.23 -2.5 444,329 - MPMX19_04974 0.23 +0.0 444,544 + MPMX19_04974 0.53 -0.7 444,545 - MPMX19_04974 0.53 -0.9 444,545 - MPMX19_04974 0.53 -0.1 444,580 + MPMX19_04974 0.58 +0.1 444,580 + MPMX19_04974 0.58 -0.8 444,581 - MPMX19_04974 0.58 +0.5 444,581 - MPMX19_04974 0.58 +0.1 444,581 - MPMX19_04974 0.58 -0.5 444,605 - MPMX19_04974 0.62 +0.8 444,605 - MPMX19_04974 0.62 -1.0 444,605 - MPMX19_04974 0.62 -1.1 444,607 + MPMX19_04974 0.62 -0.4 444,607 + MPMX19_04974 0.62 +1.1 444,608 - MPMX19_04974 0.62 +0.8 444,608 - MPMX19_04974 0.62 +1.1 444,608 - MPMX19_04974 0.62 -0.3 444,608 - MPMX19_04974 0.62 -0.2 444,608 - MPMX19_04974 0.62 +0.7 444,608 - MPMX19_04974 0.62 -1.4 444,608 - MPMX19_04974 0.62 -1.1 444,608 - MPMX19_04974 0.62 -0.5 444,613 + MPMX19_04974 0.63 -0.5 444,614 - MPMX19_04974 0.63 +1.1 444,614 - MPMX19_04974 0.63 +0.8 444,789 + MPMX19_04974 0.88 -0.6 444,789 + MPMX19_04974 0.88 -1.2 444,789 + MPMX19_04974 0.88 -0.5 444,789 + MPMX19_04974 0.88 -2.5 444,789 + MPMX19_04974 0.88 +0.3 444,790 - MPMX19_04974 0.88 -3.0 444,790 - MPMX19_04974 0.88 -0.7 444,790 - MPMX19_04974 0.88 -2.6 445,094 + MPMX19_04975 0.47 +0.5 445,095 - MPMX19_04975 0.47 -1.0 445,095 - MPMX19_04975 0.47 -0.9 445,136 + MPMX19_04975 0.55 +0.4 445,136 + MPMX19_04975 0.55 +0.5 445,136 + MPMX19_04975 0.55 +0.1 445,137 - MPMX19_04975 0.55 -0.8 445,137 - MPMX19_04975 0.55 +0.6 445,277 + MPMX19_04975 0.83 -0.5 445,277 + MPMX19_04975 0.83 -0.1 445,278 - MPMX19_04975 0.84 +0.3 445,278 - MPMX19_04975 0.84 -0.9 445,278 - MPMX19_04975 0.84 -0.1 445,337 + +0.1 445,337 + +3.1 445,372 + +0.9 445,372 + -1.6 445,372 + +0.1 445,372 + -0.4 445,372 + -0.4 445,372 + +1.1 445,372 + -0.2 445,373 - -1.2 445,373 - -0.5 445,373 - -0.5 445,373 - +1.1 445,373 - +0.7 445,376 + +0.5 445,376 + -0.6 445,376 + -0.7 445,376 + -0.2 445,376 + +0.2 445,376 + -1.6 445,376 + -0.4 445,376 + +0.8 445,376 + -1.2 445,376 + -0.2 445,376 + +0.5 445,376 + -0.3 445,376 + -0.0 445,376 + +1.0 445,376 + -0.8 445,376 + +1.4 445,376 + +2.1 445,376 + -1.1 445,376 + +1.1 445,376 + -2.8 445,377 - -1.2 445,377 - +1.0 445,377 - -1.2 445,377 - -0.4 445,377 - -1.4 445,377 - -0.6 445,377 - -0.4 445,377 - +1.7 445,377 - -0.9 445,377 - -1.1 445,377 - -0.0 445,377 - +0.5 445,377 - +1.8 445,396 + +0.1 445,397 - +0.5 445,490 + MPMX19_04976 0.12 +0.7 445,490 + MPMX19_04976 0.12 -1.0 445,490 + MPMX19_04976 0.12 +0.1 445,490 + MPMX19_04976 0.12 -0.5 445,490 + MPMX19_04976 0.12 -0.7 445,491 - MPMX19_04976 0.12 +0.0 445,491 - MPMX19_04976 0.12 +0.4 445,491 - MPMX19_04976 0.12 -1.0 445,784 + MPMX19_04976 0.43 -0.7 445,784 + MPMX19_04976 0.43 +0.5 445,784 + MPMX19_04976 0.43 -0.8 445,784 + MPMX19_04976 0.43 +0.2 445,784 + MPMX19_04976 0.43 +0.0 445,784 + MPMX19_04976 0.43 -0.9 445,784 + MPMX19_04976 0.43 +0.1 445,784 + MPMX19_04976 0.43 +0.8 445,785 - MPMX19_04976 0.43 +0.6 445,785 - MPMX19_04976 0.43 +3.4 445,785 - MPMX19_04976 0.43 -0.7
Or see this region's nucleotide sequence