Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04960 and MPMX19_04961 are separated by 566 nucleotides MPMX19_04961 and MPMX19_04962 are separated by 64 nucleotides MPMX19_04962 and MPMX19_04963 are separated by 87 nucleotides
MPMX19_04960: MPMX19_04960 - hypothetical protein, at 423,396 to 424,202
_04960
MPMX19_04961: MPMX19_04961 - hypothetical protein, at 424,769 to 425,533
_04961
MPMX19_04962: MPMX19_04962 - hypothetical protein, at 425,598 to 426,269
_04962
MPMX19_04963: MPMX19_04963 - Cysteine desulfurase IscS, at 426,357 to 427,499
_04963
Position (kb) 424
425
426 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 423.794 kb on + strand, within MPMX19_04960 at 423.844 kb on + strand, within MPMX19_04960 at 423.845 kb on - strand, within MPMX19_04960 at 423.845 kb on - strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.943 kb on + strand, within MPMX19_04960 at 423.943 kb on + strand, within MPMX19_04960 at 423.943 kb on + strand, within MPMX19_04960 at 423.943 kb on + strand, within MPMX19_04960 at 423.944 kb on - strand, within MPMX19_04960 at 424.194 kb on + strand at 424.194 kb on + strand at 424.194 kb on + strand at 424.195 kb on - strand at 424.195 kb on - strand at 424.268 kb on + strand at 424.277 kb on + strand at 424.278 kb on - strand at 424.285 kb on - strand at 424.497 kb on + strand at 424.498 kb on - strand at 424.608 kb on + strand at 424.608 kb on + strand at 424.706 kb on - strand at 424.706 kb on - strand at 424.792 kb on + strand at 424.792 kb on + strand at 424.792 kb on + strand at 424.792 kb on + strand at 424.792 kb on + strand at 424.792 kb on + strand at 424.792 kb on + strand at 424.793 kb on - strand at 424.815 kb on + strand at 424.845 kb on + strand at 424.845 kb on + strand at 424.846 kb on - strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.052 kb on - strand, within MPMX19_04961 at 425.052 kb on - strand, within MPMX19_04961 at 425.052 kb on - strand, within MPMX19_04961 at 425.052 kb on - strand, within MPMX19_04961 at 425.052 kb on - strand, within MPMX19_04961 at 425.337 kb on - strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.429 kb on + strand, within MPMX19_04961 at 425.430 kb on - strand, within MPMX19_04961 at 425.430 kb on - strand, within MPMX19_04961 at 425.430 kb on - strand, within MPMX19_04961 at 425.617 kb on + strand at 425.617 kb on + strand at 425.617 kb on + strand at 425.617 kb on + strand at 425.617 kb on + strand at 425.617 kb on + strand at 425.618 kb on - strand at 425.618 kb on - strand at 425.618 kb on - strand at 425.618 kb on - strand at 426.049 kb on + strand, within MPMX19_04962 at 426.050 kb on - strand, within MPMX19_04962 at 426.050 kb on - strand, within MPMX19_04962
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 423,794 + MPMX19_04960 0.49 +2.4 423,844 + MPMX19_04960 0.56 -0.5 423,845 - MPMX19_04960 0.56 -0.9 423,845 - MPMX19_04960 0.56 -0.9 423,905 + MPMX19_04960 0.63 -0.3 423,905 + MPMX19_04960 0.63 +0.2 423,905 + MPMX19_04960 0.63 -0.3 423,905 + MPMX19_04960 0.63 -0.0 423,905 + MPMX19_04960 0.63 -0.9 423,905 + MPMX19_04960 0.63 -0.6 423,905 + MPMX19_04960 0.63 -0.6 423,905 + MPMX19_04960 0.63 -0.7 423,905 + MPMX19_04960 0.63 -0.3 423,905 + MPMX19_04960 0.63 -0.1 423,905 + MPMX19_04960 0.63 -0.1 423,905 + MPMX19_04960 0.63 -1.4 423,905 + MPMX19_04960 0.63 +1.5 423,905 + MPMX19_04960 0.63 +1.5 423,905 + MPMX19_04960 0.63 +1.3 423,905 + MPMX19_04960 0.63 -1.4 423,905 + MPMX19_04960 0.63 +0.1 423,906 - MPMX19_04960 0.63 +0.4 423,906 - MPMX19_04960 0.63 +0.6 423,906 - MPMX19_04960 0.63 -0.2 423,906 - MPMX19_04960 0.63 -1.2 423,906 - MPMX19_04960 0.63 -1.6 423,906 - MPMX19_04960 0.63 -1.9 423,906 - MPMX19_04960 0.63 -1.1 423,906 - MPMX19_04960 0.63 -1.0 423,906 - MPMX19_04960 0.63 -0.7 423,906 - MPMX19_04960 0.63 +1.0 423,906 - MPMX19_04960 0.63 -0.4 423,906 - MPMX19_04960 0.63 -0.5 423,906 - MPMX19_04960 0.63 -0.5 423,906 - MPMX19_04960 0.63 -2.4 423,906 - MPMX19_04960 0.63 -1.2 423,907 + MPMX19_04960 0.63 -1.1 423,907 + MPMX19_04960 0.63 -2.3 423,907 + MPMX19_04960 0.63 -0.8 423,907 + MPMX19_04960 0.63 -0.6 423,907 + MPMX19_04960 0.63 +0.9 423,907 + MPMX19_04960 0.63 -0.1 423,907 + MPMX19_04960 0.63 -0.9 423,907 + MPMX19_04960 0.63 -1.2 423,907 + MPMX19_04960 0.63 +0.8 423,907 + MPMX19_04960 0.63 +0.5 423,907 + MPMX19_04960 0.63 -0.6 423,907 + MPMX19_04960 0.63 -0.4 423,907 + MPMX19_04960 0.63 +0.3 423,907 + MPMX19_04960 0.63 -1.7 423,907 + MPMX19_04960 0.63 +0.3 423,907 + MPMX19_04960 0.63 +0.6 423,907 + MPMX19_04960 0.63 -1.0 423,907 + MPMX19_04960 0.63 -1.8 423,907 + MPMX19_04960 0.63 -0.6 423,907 + MPMX19_04960 0.63 -0.8 423,908 - MPMX19_04960 0.63 -2.4 423,908 - MPMX19_04960 0.63 +0.4 423,908 - MPMX19_04960 0.63 -1.1 423,908 - MPMX19_04960 0.63 -0.0 423,908 - MPMX19_04960 0.63 -1.0 423,908 - MPMX19_04960 0.63 +0.1 423,908 - MPMX19_04960 0.63 +0.9 423,908 - MPMX19_04960 0.63 -0.0 423,908 - MPMX19_04960 0.63 -0.7 423,908 - MPMX19_04960 0.63 -0.7 423,908 - MPMX19_04960 0.63 -0.3 423,908 - MPMX19_04960 0.63 -2.0 423,908 - MPMX19_04960 0.63 -2.8 423,943 + MPMX19_04960 0.68 -1.6 423,943 + MPMX19_04960 0.68 -1.2 423,943 + MPMX19_04960 0.68 -0.2 423,943 + MPMX19_04960 0.68 -2.4 423,944 - MPMX19_04960 0.68 -1.2 424,194 + +0.4 424,194 + -0.1 424,194 + -1.2 424,195 - -0.6 424,195 - -2.1 424,268 + -1.2 424,277 + -0.9 424,278 - -0.2 424,285 - -1.5 424,497 + -0.6 424,498 - -0.5 424,608 + +0.5 424,608 + +0.1 424,706 - -0.6 424,706 - -1.4 424,792 + -1.6 424,792 + -2.4 424,792 + +0.1 424,792 + -1.5 424,792 + +1.3 424,792 + -0.9 424,792 + -1.4 424,793 - +1.1 424,815 + -1.8 424,845 + -1.2 424,845 + -0.4 424,846 - MPMX19_04961 0.10 -0.2 425,009 + MPMX19_04961 0.31 -2.0 425,009 + MPMX19_04961 0.31 +0.3 425,009 + MPMX19_04961 0.31 -0.4 425,009 + MPMX19_04961 0.31 +0.3 425,009 + MPMX19_04961 0.31 -1.1 425,009 + MPMX19_04961 0.31 -1.8 425,009 + MPMX19_04961 0.31 +0.3 425,009 + MPMX19_04961 0.31 -1.6 425,009 + MPMX19_04961 0.31 -0.7 425,009 + MPMX19_04961 0.31 +0.1 425,010 - MPMX19_04961 0.32 +0.9 425,010 - MPMX19_04961 0.32 +0.1 425,010 - MPMX19_04961 0.32 -1.7 425,010 - MPMX19_04961 0.32 -1.4 425,010 - MPMX19_04961 0.32 -0.7 425,010 - MPMX19_04961 0.32 -0.7 425,010 - MPMX19_04961 0.32 -1.1 425,010 - MPMX19_04961 0.32 -0.8 425,010 - MPMX19_04961 0.32 -1.2 425,010 - MPMX19_04961 0.32 +0.1 425,010 - MPMX19_04961 0.32 -1.7 425,010 - MPMX19_04961 0.32 -1.3 425,012 + MPMX19_04961 0.32 -1.2 425,012 + MPMX19_04961 0.32 -2.6 425,012 + MPMX19_04961 0.32 -1.8 425,012 + MPMX19_04961 0.32 -0.4 425,012 + MPMX19_04961 0.32 -0.4 425,012 + MPMX19_04961 0.32 -1.6 425,012 + MPMX19_04961 0.32 -1.1 425,012 + MPMX19_04961 0.32 -0.3 425,012 + MPMX19_04961 0.32 -0.1 425,013 - MPMX19_04961 0.32 -0.8 425,013 - MPMX19_04961 0.32 +0.1 425,013 - MPMX19_04961 0.32 -1.1 425,013 - MPMX19_04961 0.32 -0.6 425,013 - MPMX19_04961 0.32 -1.0 425,013 - MPMX19_04961 0.32 -1.2 425,013 - MPMX19_04961 0.32 +0.5 425,013 - MPMX19_04961 0.32 -0.2 425,013 - MPMX19_04961 0.32 -1.2 425,013 - MPMX19_04961 0.32 -0.3 425,051 + MPMX19_04961 0.37 -1.6 425,051 + MPMX19_04961 0.37 +0.5 425,051 + MPMX19_04961 0.37 -1.2 425,051 + MPMX19_04961 0.37 -1.9 425,051 + MPMX19_04961 0.37 +1.5 425,051 + MPMX19_04961 0.37 -0.1 425,051 + MPMX19_04961 0.37 -0.5 425,052 - MPMX19_04961 0.37 +0.9 425,052 - MPMX19_04961 0.37 -2.0 425,052 - MPMX19_04961 0.37 -1.1 425,052 - MPMX19_04961 0.37 -1.4 425,052 - MPMX19_04961 0.37 +1.4 425,337 - MPMX19_04961 0.74 +0.4 425,411 + MPMX19_04961 0.84 -0.8 425,411 + MPMX19_04961 0.84 -1.9 425,411 + MPMX19_04961 0.84 -2.0 425,411 + MPMX19_04961 0.84 -0.2 425,411 + MPMX19_04961 0.84 -1.1 425,411 + MPMX19_04961 0.84 +0.2 425,411 + MPMX19_04961 0.84 -0.2 425,411 + MPMX19_04961 0.84 -1.1 425,412 - MPMX19_04961 0.84 -0.6 425,412 - MPMX19_04961 0.84 -0.6 425,412 - MPMX19_04961 0.84 -1.4 425,412 - MPMX19_04961 0.84 -0.7 425,412 - MPMX19_04961 0.84 -1.2 425,412 - MPMX19_04961 0.84 +0.1 425,412 - MPMX19_04961 0.84 -0.6 425,429 + MPMX19_04961 0.86 -2.0 425,430 - MPMX19_04961 0.86 -2.7 425,430 - MPMX19_04961 0.86 -1.4 425,430 - MPMX19_04961 0.86 -2.0 425,617 + -1.4 425,617 + -1.2 425,617 + -0.6 425,617 + -0.6 425,617 + -2.0 425,617 + +0.5 425,618 - +0.1 425,618 - -0.4 425,618 - -0.2 425,618 - -0.4 426,049 + MPMX19_04962 0.67 -0.2 426,050 - MPMX19_04962 0.67 -1.7 426,050 - MPMX19_04962 0.67 -1.7
Or see this region's nucleotide sequence