Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04921

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04920 and MPMX19_04921 are separated by 218 nucleotidesMPMX19_04921 and MPMX19_04922 are separated by 45 nucleotidesMPMX19_04922 and MPMX19_04923 overlap by 4 nucleotides MPMX19_04920: MPMX19_04920 - Succinate-semialdehyde dehydrogenase [NADP(+)] GabD, at 376,731 to 378,191 _04920 MPMX19_04921: MPMX19_04921 - HTH-type transcriptional regulator PuuR, at 378,410 to 378,976 _04921 MPMX19_04922: MPMX19_04922 - Putative 2-aminoethylphosphonate transport system permease protein PhnV, at 379,022 to 379,852 _04922 MPMX19_04923: MPMX19_04923 - hypothetical protein, at 379,849 to 381,099 _04923 Position (kb) 378 379Strain fitness (log2 ratio) -2 -1 0 1 2at 377.809 kb on + strand, within MPMX19_04920at 377.809 kb on + strand, within MPMX19_04920at 377.809 kb on + strand, within MPMX19_04920at 377.857 kb on + strand, within MPMX19_04920at 377.857 kb on + strand, within MPMX19_04920at 377.857 kb on + strand, within MPMX19_04920at 377.858 kb on - strand, within MPMX19_04920at 377.858 kb on - strand, within MPMX19_04920at 377.950 kb on + strand, within MPMX19_04920at 377.950 kb on + strand, within MPMX19_04920at 378.148 kb on + strandat 378.148 kb on + strandat 378.148 kb on + strandat 378.149 kb on - strandat 378.149 kb on - strandat 378.149 kb on - strandat 378.218 kb on - strandat 378.218 kb on - strandat 378.304 kb on - strandat 378.335 kb on + strandat 378.335 kb on + strandat 378.335 kb on + strandat 378.336 kb on - strandat 378.336 kb on - strandat 378.336 kb on - strandat 378.336 kb on - strandat 378.345 kb on + strandat 378.345 kb on + strandat 378.383 kb on + strandat 378.384 kb on - strandat 378.756 kb on - strand, within MPMX19_04921at 378.756 kb on - strand, within MPMX19_04921at 378.884 kb on + strand, within MPMX19_04921at 378.884 kb on + strand, within MPMX19_04921at 378.884 kb on + strand, within MPMX19_04921at 378.884 kb on + strand, within MPMX19_04921at 378.884 kb on + strand, within MPMX19_04921at 378.885 kb on - strand, within MPMX19_04921at 378.968 kb on + strandat 378.968 kb on + strandat 378.968 kb on + strandat 378.968 kb on + strandat 378.969 kb on - strandat 378.969 kb on - strandat 378.969 kb on - strandat 378.996 kb on + strandat 378.996 kb on + strandat 378.996 kb on + strandat 378.997 kb on - strandat 378.997 kb on - strandat 379.024 kb on - strandat 379.431 kb on + strand, within MPMX19_04922at 379.431 kb on + strand, within MPMX19_04922at 379.431 kb on + strand, within MPMX19_04922at 379.431 kb on + strand, within MPMX19_04922at 379.431 kb on + strand, within MPMX19_04922at 379.431 kb on + strand, within MPMX19_04922at 379.431 kb on + strand, within MPMX19_04922at 379.431 kb on + strand, within MPMX19_04922at 379.431 kb on + strand, within MPMX19_04922at 379.431 kb on + strand, within MPMX19_04922at 379.431 kb on + strand, within MPMX19_04922at 379.432 kb on - strand, within MPMX19_04922at 379.432 kb on - strand, within MPMX19_04922at 379.432 kb on - strand, within MPMX19_04922at 379.432 kb on - strand, within MPMX19_04922at 379.432 kb on - strand, within MPMX19_04922at 379.432 kb on - strand, within MPMX19_04922at 379.432 kb on - strand, within MPMX19_04922at 379.467 kb on + strand, within MPMX19_04922at 379.468 kb on - strand, within MPMX19_04922at 379.468 kb on - strand, within MPMX19_04922at 379.468 kb on - strand, within MPMX19_04922at 379.468 kb on - strand, within MPMX19_04922at 379.468 kb on - strand, within MPMX19_04922at 379.511 kb on + strand, within MPMX19_04922at 379.512 kb on - strand, within MPMX19_04922at 379.674 kb on + strand, within MPMX19_04922at 379.674 kb on + strand, within MPMX19_04922at 379.674 kb on + strand, within MPMX19_04922at 379.675 kb on - strand, within MPMX19_04922at 379.704 kb on + strand, within MPMX19_04922at 379.704 kb on + strand, within MPMX19_04922at 379.704 kb on + strand, within MPMX19_04922at 379.705 kb on - strand, within MPMX19_04922at 379.713 kb on + strand, within MPMX19_04922at 379.713 kb on + strand, within MPMX19_04922at 379.713 kb on + strand, within MPMX19_04922at 379.713 kb on + strand, within MPMX19_04922at 379.713 kb on + strand, within MPMX19_04922at 379.713 kb on + strand, within MPMX19_04922at 379.713 kb on + strand, within MPMX19_04922at 379.713 kb on + strand, within MPMX19_04922at 379.713 kb on + strand, within MPMX19_04922at 379.713 kb on + strand, within MPMX19_04922at 379.713 kb on + strand, within MPMX19_04922at 379.714 kb on - strand, within MPMX19_04922at 379.714 kb on - strand, within MPMX19_04922at 379.714 kb on - strand, within MPMX19_04922at 379.714 kb on - strand, within MPMX19_04922at 379.714 kb on - strand, within MPMX19_04922at 379.714 kb on - strand, within MPMX19_04922at 379.714 kb on - strand, within MPMX19_04922at 379.714 kb on - strand, within MPMX19_04922at 379.714 kb on - strand, within MPMX19_04922at 379.898 kb on + strandat 379.898 kb on + strandat 379.899 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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377,809 + MPMX19_04920 0.74 +0.5
377,809 + MPMX19_04920 0.74 -0.1
377,809 + MPMX19_04920 0.74 -0.5
377,857 + MPMX19_04920 0.77 -1.3
377,857 + MPMX19_04920 0.77 +0.1
377,857 + MPMX19_04920 0.77 -1.7
377,858 - MPMX19_04920 0.77 +1.8
377,858 - MPMX19_04920 0.77 -0.5
377,950 + MPMX19_04920 0.83 -0.1
377,950 + MPMX19_04920 0.83 +0.1
378,148 + +0.5
378,148 + -1.4
378,148 + -1.0
378,149 - -1.5
378,149 - -1.1
378,149 - -1.0
378,218 - -0.2
378,218 - -2.6
378,304 - -1.3
378,335 + +0.0
378,335 + +0.9
378,335 + -1.1
378,336 - -1.5
378,336 - +0.5
378,336 - -0.6
378,336 - +1.4
378,345 + -1.8
378,345 + -0.5
378,383 + +1.4
378,384 - -1.8
378,756 - MPMX19_04921 0.61 +0.3
378,756 - MPMX19_04921 0.61 -0.5
378,884 + MPMX19_04921 0.84 -0.9
378,884 + MPMX19_04921 0.84 -0.8
378,884 + MPMX19_04921 0.84 -0.6
378,884 + MPMX19_04921 0.84 -0.1
378,884 + MPMX19_04921 0.84 -1.5
378,885 - MPMX19_04921 0.84 -2.2
378,968 + +0.4
378,968 + -2.2
378,968 + +1.5
378,968 + -1.4
378,969 - -2.4
378,969 - +1.1
378,969 - -1.2
378,996 + -1.4
378,996 + -0.5
378,996 + -0.5
378,997 - -0.7
378,997 - +0.3
379,024 - -1.7
379,431 + MPMX19_04922 0.49 -0.5
379,431 + MPMX19_04922 0.49 +0.1
379,431 + MPMX19_04922 0.49 -1.1
379,431 + MPMX19_04922 0.49 -0.7
379,431 + MPMX19_04922 0.49 -0.1
379,431 + MPMX19_04922 0.49 -0.6
379,431 + MPMX19_04922 0.49 -1.2
379,431 + MPMX19_04922 0.49 +0.7
379,431 + MPMX19_04922 0.49 +0.4
379,431 + MPMX19_04922 0.49 +1.1
379,431 + MPMX19_04922 0.49 -1.1
379,432 - MPMX19_04922 0.49 -0.7
379,432 - MPMX19_04922 0.49 -0.2
379,432 - MPMX19_04922 0.49 +0.5
379,432 - MPMX19_04922 0.49 +0.7
379,432 - MPMX19_04922 0.49 +0.2
379,432 - MPMX19_04922 0.49 -2.1
379,432 - MPMX19_04922 0.49 -0.8
379,467 + MPMX19_04922 0.54 +0.9
379,468 - MPMX19_04922 0.54 -0.7
379,468 - MPMX19_04922 0.54 -0.1
379,468 - MPMX19_04922 0.54 -0.4
379,468 - MPMX19_04922 0.54 -1.4
379,468 - MPMX19_04922 0.54 -0.9
379,511 + MPMX19_04922 0.59 -0.5
379,512 - MPMX19_04922 0.59 +0.7
379,674 + MPMX19_04922 0.78 -1.8
379,674 + MPMX19_04922 0.78 -0.4
379,674 + MPMX19_04922 0.78 -1.1
379,675 - MPMX19_04922 0.79 -0.3
379,704 + MPMX19_04922 0.82 -1.9
379,704 + MPMX19_04922 0.82 +1.3
379,704 + MPMX19_04922 0.82 -1.4
379,705 - MPMX19_04922 0.82 +0.9
379,713 + MPMX19_04922 0.83 +0.2
379,713 + MPMX19_04922 0.83 -0.9
379,713 + MPMX19_04922 0.83 -1.0
379,713 + MPMX19_04922 0.83 +0.4
379,713 + MPMX19_04922 0.83 -2.4
379,713 + MPMX19_04922 0.83 +0.5
379,713 + MPMX19_04922 0.83 -0.5
379,713 + MPMX19_04922 0.83 +0.5
379,713 + MPMX19_04922 0.83 -0.1
379,713 + MPMX19_04922 0.83 -1.1
379,713 + MPMX19_04922 0.83 -0.5
379,714 - MPMX19_04922 0.83 +0.9
379,714 - MPMX19_04922 0.83 -1.2
379,714 - MPMX19_04922 0.83 -0.8
379,714 - MPMX19_04922 0.83 -1.6
379,714 - MPMX19_04922 0.83 -0.2
379,714 - MPMX19_04922 0.83 -0.1
379,714 - MPMX19_04922 0.83 -2.4
379,714 - MPMX19_04922 0.83 +0.2
379,714 - MPMX19_04922 0.83 -1.1
379,898 + -0.1
379,898 + +0.5
379,899 - -1.4

Or see this region's nucleotide sequence