Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04918 and MPMX19_04919 are separated by 178 nucleotides MPMX19_04919 and MPMX19_04920 are separated by 34 nucleotides
MPMX19_04918: MPMX19_04918 - Acetyl-CoA:oxalate CoA-transferase, at 374,026 to 375,228
_04918
MPMX19_04919: MPMX19_04919 - 5-aminovalerate aminotransferase DavT, at 375,407 to 376,696
_04919
MPMX19_04920: MPMX19_04920 - Succinate-semialdehyde dehydrogenase [NADP(+)] GabD, at 376,731 to 378,191
_04920
Position (kb) 375
376
377 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 374.486 kb on + strand, within MPMX19_04918 at 374.486 kb on + strand, within MPMX19_04918 at 374.486 kb on + strand, within MPMX19_04918 at 374.486 kb on + strand, within MPMX19_04918 at 374.486 kb on + strand, within MPMX19_04918 at 374.486 kb on + strand, within MPMX19_04918 at 374.486 kb on + strand, within MPMX19_04918 at 374.486 kb on + strand, within MPMX19_04918 at 374.486 kb on + strand, within MPMX19_04918 at 374.486 kb on + strand, within MPMX19_04918 at 374.487 kb on - strand, within MPMX19_04918 at 374.487 kb on - strand, within MPMX19_04918 at 374.487 kb on - strand, within MPMX19_04918 at 374.487 kb on - strand, within MPMX19_04918 at 374.487 kb on - strand, within MPMX19_04918 at 374.487 kb on - strand, within MPMX19_04918 at 374.514 kb on - strand, within MPMX19_04918 at 374.514 kb on - strand, within MPMX19_04918 at 374.514 kb on - strand, within MPMX19_04918 at 374.526 kb on + strand, within MPMX19_04918 at 374.526 kb on + strand, within MPMX19_04918 at 374.526 kb on + strand, within MPMX19_04918 at 374.526 kb on + strand, within MPMX19_04918 at 374.526 kb on + strand, within MPMX19_04918 at 374.526 kb on + strand, within MPMX19_04918 at 374.526 kb on + strand, within MPMX19_04918 at 374.526 kb on + strand, within MPMX19_04918 at 374.527 kb on - strand, within MPMX19_04918 at 374.527 kb on - strand, within MPMX19_04918 at 374.527 kb on - strand, within MPMX19_04918 at 374.527 kb on - strand, within MPMX19_04918 at 374.527 kb on - strand, within MPMX19_04918 at 374.527 kb on - strand, within MPMX19_04918 at 374.693 kb on + strand, within MPMX19_04918 at 374.693 kb on + strand, within MPMX19_04918 at 374.693 kb on + strand, within MPMX19_04918 at 374.694 kb on - strand, within MPMX19_04918 at 374.694 kb on - strand, within MPMX19_04918 at 374.694 kb on - strand, within MPMX19_04918 at 374.814 kb on - strand, within MPMX19_04918 at 374.867 kb on + strand, within MPMX19_04918 at 374.868 kb on - strand, within MPMX19_04918 at 374.868 kb on - strand, within MPMX19_04918 at 374.868 kb on - strand, within MPMX19_04918 at 374.903 kb on + strand, within MPMX19_04918 at 374.903 kb on + strand, within MPMX19_04918 at 374.904 kb on - strand, within MPMX19_04918 at 374.904 kb on - strand, within MPMX19_04918 at 374.904 kb on - strand, within MPMX19_04918 at 374.904 kb on - strand, within MPMX19_04918 at 374.904 kb on - strand, within MPMX19_04918 at 374.915 kb on + strand, within MPMX19_04918 at 374.915 kb on + strand, within MPMX19_04918 at 374.915 kb on + strand, within MPMX19_04918 at 374.915 kb on + strand, within MPMX19_04918 at 374.916 kb on - strand, within MPMX19_04918 at 374.916 kb on - strand, within MPMX19_04918 at 374.916 kb on - strand, within MPMX19_04918 at 374.916 kb on - strand, within MPMX19_04918 at 374.916 kb on - strand, within MPMX19_04918 at 374.916 kb on - strand, within MPMX19_04918 at 374.916 kb on - strand, within MPMX19_04918 at 375.053 kb on + strand, within MPMX19_04918 at 375.053 kb on + strand, within MPMX19_04918 at 375.053 kb on + strand, within MPMX19_04918 at 375.054 kb on - strand, within MPMX19_04918 at 375.054 kb on - strand, within MPMX19_04918 at 375.054 kb on - strand, within MPMX19_04918 at 375.054 kb on - strand, within MPMX19_04918 at 375.054 kb on - strand, within MPMX19_04918 at 375.054 kb on - strand, within MPMX19_04918 at 375.054 kb on - strand, within MPMX19_04918 at 375.405 kb on + strand at 375.405 kb on + strand at 375.405 kb on + strand at 375.405 kb on + strand at 375.405 kb on + strand at 375.405 kb on + strand at 375.405 kb on + strand at 375.405 kb on + strand at 375.405 kb on + strand at 375.405 kb on + strand at 375.408 kb on + strand at 375.409 kb on - strand at 375.409 kb on - strand at 375.409 kb on - strand at 375.513 kb on + strand at 375.513 kb on + strand at 375.513 kb on + strand at 375.513 kb on + strand at 375.513 kb on + strand at 375.513 kb on + strand at 375.513 kb on + strand at 375.513 kb on + strand at 375.513 kb on + strand at 375.513 kb on + strand at 375.513 kb on + strand at 375.514 kb on - strand at 375.514 kb on - strand at 375.514 kb on - strand at 375.514 kb on - strand at 375.514 kb on - strand at 375.514 kb on - strand at 375.514 kb on - strand at 375.514 kb on - strand at 375.514 kb on - strand at 375.514 kb on - strand at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.804 kb on + strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 375.805 kb on - strand, within MPMX19_04919 at 376.233 kb on + strand, within MPMX19_04919 at 376.233 kb on + strand, within MPMX19_04919 at 376.233 kb on + strand, within MPMX19_04919 at 376.233 kb on + strand, within MPMX19_04919 at 376.233 kb on + strand, within MPMX19_04919 at 376.234 kb on - strand, within MPMX19_04919 at 376.234 kb on - strand, within MPMX19_04919 at 376.234 kb on - strand, within MPMX19_04919 at 376.234 kb on - strand, within MPMX19_04919 at 376.449 kb on + strand, within MPMX19_04919 at 376.450 kb on - strand, within MPMX19_04919 at 376.620 kb on + strand at 376.620 kb on + strand at 376.620 kb on + strand at 376.620 kb on + strand at 376.620 kb on + strand at 376.620 kb on + strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.621 kb on - strand at 376.756 kb on + strand at 376.756 kb on + strand at 376.756 kb on + strand at 376.757 kb on - strand at 376.757 kb on - strand at 376.757 kb on - strand at 376.787 kb on - strand at 376.787 kb on - strand at 376.787 kb on - strand at 376.787 kb on - strand at 376.883 kb on - strand, within MPMX19_04920 at 376.883 kb on - strand, within MPMX19_04920 at 376.883 kb on - strand, within MPMX19_04920 at 376.883 kb on - strand, within MPMX19_04920 at 376.883 kb on - strand, within MPMX19_04920 at 376.883 kb on - strand, within MPMX19_04920 at 376.883 kb on - strand, within MPMX19_04920 at 376.930 kb on + strand, within MPMX19_04920 at 376.930 kb on + strand, within MPMX19_04920 at 376.930 kb on + strand, within MPMX19_04920 at 376.931 kb on - strand, within MPMX19_04920 at 376.931 kb on - strand, within MPMX19_04920 at 376.931 kb on - strand, within MPMX19_04920 at 376.931 kb on - strand, within MPMX19_04920 at 376.936 kb on + strand, within MPMX19_04920 at 376.937 kb on - strand, within MPMX19_04920 at 376.937 kb on - strand, within MPMX19_04920 at 376.937 kb on - strand, within MPMX19_04920 at 376.937 kb on - strand, within MPMX19_04920 at 377.281 kb on + strand, within MPMX19_04920 at 377.281 kb on + strand, within MPMX19_04920 at 377.281 kb on + strand, within MPMX19_04920 at 377.281 kb on + strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.282 kb on - strand, within MPMX19_04920 at 377.341 kb on + strand, within MPMX19_04920 at 377.342 kb on - strand, within MPMX19_04920 at 377.342 kb on - strand, within MPMX19_04920
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 374,486 + MPMX19_04918 0.38 -0.3 374,486 + MPMX19_04918 0.38 -0.1 374,486 + MPMX19_04918 0.38 -0.8 374,486 + MPMX19_04918 0.38 +0.2 374,486 + MPMX19_04918 0.38 -0.6 374,486 + MPMX19_04918 0.38 -0.2 374,486 + MPMX19_04918 0.38 -1.0 374,486 + MPMX19_04918 0.38 +0.4 374,486 + MPMX19_04918 0.38 -0.0 374,486 + MPMX19_04918 0.38 -1.5 374,487 - MPMX19_04918 0.38 -0.6 374,487 - MPMX19_04918 0.38 -0.0 374,487 - MPMX19_04918 0.38 +0.1 374,487 - MPMX19_04918 0.38 -0.3 374,487 - MPMX19_04918 0.38 -0.0 374,487 - MPMX19_04918 0.38 -1.2 374,514 - MPMX19_04918 0.41 -0.2 374,514 - MPMX19_04918 0.41 -1.1 374,514 - MPMX19_04918 0.41 -0.1 374,526 + MPMX19_04918 0.42 -1.6 374,526 + MPMX19_04918 0.42 -1.1 374,526 + MPMX19_04918 0.42 -0.6 374,526 + MPMX19_04918 0.42 -1.8 374,526 + MPMX19_04918 0.42 +0.2 374,526 + MPMX19_04918 0.42 -0.9 374,526 + MPMX19_04918 0.42 -1.4 374,526 + MPMX19_04918 0.42 -1.6 374,527 - MPMX19_04918 0.42 +1.6 374,527 - MPMX19_04918 0.42 -1.2 374,527 - MPMX19_04918 0.42 +0.5 374,527 - MPMX19_04918 0.42 -1.6 374,527 - MPMX19_04918 0.42 +0.0 374,527 - MPMX19_04918 0.42 -0.5 374,693 + MPMX19_04918 0.55 -1.0 374,693 + MPMX19_04918 0.55 -0.7 374,693 + MPMX19_04918 0.55 -1.8 374,694 - MPMX19_04918 0.56 -0.1 374,694 - MPMX19_04918 0.56 -0.8 374,694 - MPMX19_04918 0.56 -0.4 374,814 - MPMX19_04918 0.66 +0.1 374,867 + MPMX19_04918 0.70 -1.8 374,868 - MPMX19_04918 0.70 +0.9 374,868 - MPMX19_04918 0.70 +0.9 374,868 - MPMX19_04918 0.70 -0.9 374,903 + MPMX19_04918 0.73 -0.4 374,903 + MPMX19_04918 0.73 -2.1 374,904 - MPMX19_04918 0.73 -1.5 374,904 - MPMX19_04918 0.73 +0.5 374,904 - MPMX19_04918 0.73 -0.8 374,904 - MPMX19_04918 0.73 -0.7 374,904 - MPMX19_04918 0.73 -1.6 374,915 + MPMX19_04918 0.74 -0.3 374,915 + MPMX19_04918 0.74 -0.5 374,915 + MPMX19_04918 0.74 -1.0 374,915 + MPMX19_04918 0.74 -1.0 374,916 - MPMX19_04918 0.74 -0.7 374,916 - MPMX19_04918 0.74 -0.0 374,916 - MPMX19_04918 0.74 -1.5 374,916 - MPMX19_04918 0.74 -1.5 374,916 - MPMX19_04918 0.74 -0.2 374,916 - MPMX19_04918 0.74 -0.1 374,916 - MPMX19_04918 0.74 +1.1 375,053 + MPMX19_04918 0.85 +0.3 375,053 + MPMX19_04918 0.85 -0.4 375,053 + MPMX19_04918 0.85 -1.9 375,054 - MPMX19_04918 0.85 -1.1 375,054 - MPMX19_04918 0.85 -0.3 375,054 - MPMX19_04918 0.85 +0.9 375,054 - MPMX19_04918 0.85 -0.7 375,054 - MPMX19_04918 0.85 -1.0 375,054 - MPMX19_04918 0.85 -1.9 375,054 - MPMX19_04918 0.85 -2.1 375,405 + +0.1 375,405 + -0.4 375,405 + -0.5 375,405 + -1.0 375,405 + -0.8 375,405 + -0.9 375,405 + +1.1 375,405 + -0.3 375,405 + -0.5 375,405 + -1.3 375,408 + -0.5 375,409 - -0.8 375,409 - -0.2 375,409 - -1.0 375,513 + +0.5 375,513 + -0.4 375,513 + +0.8 375,513 + +1.1 375,513 + -0.7 375,513 + -0.1 375,513 + -1.2 375,513 + +0.9 375,513 + +0.1 375,513 + -1.6 375,513 + +1.4 375,514 - +0.4 375,514 - -1.5 375,514 - -0.8 375,514 - -0.5 375,514 - -1.1 375,514 - +0.1 375,514 - +0.3 375,514 - -1.7 375,514 - -1.7 375,514 - +0.1 375,804 + MPMX19_04919 0.31 +0.8 375,804 + MPMX19_04919 0.31 -0.4 375,804 + MPMX19_04919 0.31 -0.4 375,804 + MPMX19_04919 0.31 -0.5 375,804 + MPMX19_04919 0.31 +1.4 375,804 + MPMX19_04919 0.31 -1.9 375,804 + MPMX19_04919 0.31 -0.2 375,804 + MPMX19_04919 0.31 -1.5 375,804 + MPMX19_04919 0.31 -0.3 375,804 + MPMX19_04919 0.31 -0.5 375,805 - MPMX19_04919 0.31 -2.9 375,805 - MPMX19_04919 0.31 -1.5 375,805 - MPMX19_04919 0.31 +0.3 375,805 - MPMX19_04919 0.31 +0.2 375,805 - MPMX19_04919 0.31 -0.3 375,805 - MPMX19_04919 0.31 -1.5 375,805 - MPMX19_04919 0.31 +1.1 375,805 - MPMX19_04919 0.31 -1.2 375,805 - MPMX19_04919 0.31 -1.6 375,805 - MPMX19_04919 0.31 +0.1 375,805 - MPMX19_04919 0.31 +0.0 375,805 - MPMX19_04919 0.31 -0.1 375,805 - MPMX19_04919 0.31 -0.9 376,233 + MPMX19_04919 0.64 -0.7 376,233 + MPMX19_04919 0.64 +1.5 376,233 + MPMX19_04919 0.64 +0.1 376,233 + MPMX19_04919 0.64 -0.6 376,233 + MPMX19_04919 0.64 -0.8 376,234 - MPMX19_04919 0.64 -0.7 376,234 - MPMX19_04919 0.64 -0.2 376,234 - MPMX19_04919 0.64 +0.7 376,234 - MPMX19_04919 0.64 +0.3 376,449 + MPMX19_04919 0.81 +0.3 376,450 - MPMX19_04919 0.81 +1.1 376,620 + -0.0 376,620 + +0.4 376,620 + +1.3 376,620 + -0.8 376,620 + -1.2 376,620 + -1.5 376,621 - +0.0 376,621 - -0.4 376,621 - -0.8 376,621 - +0.8 376,621 - -1.2 376,621 - +0.6 376,621 - +0.1 376,621 - +0.1 376,621 - -1.6 376,621 - -0.9 376,621 - +0.5 376,756 + -1.5 376,756 + -1.2 376,756 + -2.1 376,757 - +0.1 376,757 - -1.2 376,757 - -0.1 376,787 - -0.5 376,787 - -0.5 376,787 - -1.5 376,787 - +0.8 376,883 - MPMX19_04920 0.10 +0.7 376,883 - MPMX19_04920 0.10 +0.3 376,883 - MPMX19_04920 0.10 +0.9 376,883 - MPMX19_04920 0.10 -2.4 376,883 - MPMX19_04920 0.10 -0.4 376,883 - MPMX19_04920 0.10 +0.1 376,883 - MPMX19_04920 0.10 -0.5 376,930 + MPMX19_04920 0.14 -0.6 376,930 + MPMX19_04920 0.14 -0.0 376,930 + MPMX19_04920 0.14 -1.1 376,931 - MPMX19_04920 0.14 -1.5 376,931 - MPMX19_04920 0.14 -1.0 376,931 - MPMX19_04920 0.14 -1.5 376,931 - MPMX19_04920 0.14 -1.3 376,936 + MPMX19_04920 0.14 +0.5 376,937 - MPMX19_04920 0.14 -0.5 376,937 - MPMX19_04920 0.14 -0.3 376,937 - MPMX19_04920 0.14 +0.1 376,937 - MPMX19_04920 0.14 -0.7 377,281 + MPMX19_04920 0.38 -0.1 377,281 + MPMX19_04920 0.38 -0.5 377,281 + MPMX19_04920 0.38 -0.6 377,281 + MPMX19_04920 0.38 -0.2 377,282 - MPMX19_04920 0.38 -0.8 377,282 - MPMX19_04920 0.38 -0.4 377,282 - MPMX19_04920 0.38 -0.4 377,282 - MPMX19_04920 0.38 -0.8 377,282 - MPMX19_04920 0.38 -1.9 377,282 - MPMX19_04920 0.38 +0.5 377,282 - MPMX19_04920 0.38 -0.8 377,282 - MPMX19_04920 0.38 -1.2 377,282 - MPMX19_04920 0.38 +0.4 377,341 + MPMX19_04920 0.42 -1.5 377,342 - MPMX19_04920 0.42 -0.5 377,342 - MPMX19_04920 0.42 +0.4
Or see this region's nucleotide sequence