Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04917

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04915 and MPMX19_04916 are separated by 169 nucleotidesMPMX19_04916 and MPMX19_04917 are separated by 136 nucleotidesMPMX19_04917 and MPMX19_04918 are separated by 51 nucleotides MPMX19_04915: MPMX19_04915 - Riboflavin transporter, at 371,246 to 372,148 _04915 MPMX19_04916: MPMX19_04916 - DNA-binding transcriptional activator DecR, at 372,318 to 372,797 _04916 MPMX19_04917: MPMX19_04917 - Alcohol dehydrogenase, at 372,934 to 373,974 _04917 MPMX19_04918: MPMX19_04918 - Acetyl-CoA:oxalate CoA-transferase, at 374,026 to 375,228 _04918 Position (kb) 372 373 374Strain fitness (log2 ratio) -3 -2 -1 0 1at 372.218 kb on + strandat 372.218 kb on + strandat 372.442 kb on + strand, within MPMX19_04916at 372.442 kb on + strand, within MPMX19_04916at 372.442 kb on + strand, within MPMX19_04916at 372.443 kb on - strand, within MPMX19_04916at 372.443 kb on - strand, within MPMX19_04916at 372.443 kb on - strand, within MPMX19_04916at 372.640 kb on + strand, within MPMX19_04916at 372.640 kb on + strand, within MPMX19_04916at 372.641 kb on - strand, within MPMX19_04916at 372.641 kb on - strand, within MPMX19_04916at 372.641 kb on - strand, within MPMX19_04916at 372.783 kb on - strandat 372.783 kb on - strandat 372.783 kb on - strandat 372.846 kb on + strandat 372.846 kb on + strandat 372.846 kb on + strandat 372.847 kb on - strandat 372.847 kb on - strandat 372.847 kb on - strandat 372.847 kb on - strandat 372.847 kb on - strandat 372.900 kb on - strandat 372.949 kb on + strandat 372.949 kb on + strandat 372.949 kb on + strandat 372.949 kb on + strandat 372.949 kb on + strandat 372.949 kb on + strandat 372.950 kb on - strandat 372.950 kb on - strandat 372.950 kb on - strandat 372.950 kb on - strandat 372.950 kb on - strandat 372.950 kb on - strandat 373.294 kb on + strand, within MPMX19_04917at 373.294 kb on + strand, within MPMX19_04917at 373.294 kb on + strand, within MPMX19_04917at 373.294 kb on + strand, within MPMX19_04917at 373.294 kb on + strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.295 kb on - strand, within MPMX19_04917at 373.825 kb on + strand, within MPMX19_04917at 373.825 kb on + strand, within MPMX19_04917at 373.825 kb on + strand, within MPMX19_04917at 373.826 kb on - strand, within MPMX19_04917at 373.826 kb on - strand, within MPMX19_04917at 374.156 kb on + strand, within MPMX19_04918at 374.156 kb on + strand, within MPMX19_04918at 374.157 kb on - strand, within MPMX19_04918at 374.399 kb on + strand, within MPMX19_04918at 374.399 kb on + strand, within MPMX19_04918at 374.400 kb on - strand, within MPMX19_04918at 374.400 kb on - strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.487 kb on - strand, within MPMX19_04918at 374.487 kb on - strand, within MPMX19_04918at 374.487 kb on - strand, within MPMX19_04918at 374.487 kb on - strand, within MPMX19_04918at 374.487 kb on - strand, within MPMX19_04918at 374.487 kb on - strand, within MPMX19_04918at 374.514 kb on - strand, within MPMX19_04918at 374.514 kb on - strand, within MPMX19_04918at 374.514 kb on - strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.527 kb on - strand, within MPMX19_04918at 374.527 kb on - strand, within MPMX19_04918at 374.527 kb on - strand, within MPMX19_04918at 374.527 kb on - strand, within MPMX19_04918at 374.527 kb on - strand, within MPMX19_04918at 374.527 kb on - strand, within MPMX19_04918at 374.693 kb on + strand, within MPMX19_04918at 374.693 kb on + strand, within MPMX19_04918at 374.693 kb on + strand, within MPMX19_04918at 374.694 kb on - strand, within MPMX19_04918at 374.694 kb on - strand, within MPMX19_04918at 374.694 kb on - strand, within MPMX19_04918at 374.814 kb on - strand, within MPMX19_04918at 374.867 kb on + strand, within MPMX19_04918at 374.868 kb on - strand, within MPMX19_04918at 374.868 kb on - strand, within MPMX19_04918at 374.868 kb on - strand, within MPMX19_04918at 374.903 kb on + strand, within MPMX19_04918at 374.903 kb on + strand, within MPMX19_04918at 374.904 kb on - strand, within MPMX19_04918at 374.904 kb on - strand, within MPMX19_04918at 374.904 kb on - strand, within MPMX19_04918at 374.904 kb on - strand, within MPMX19_04918at 374.904 kb on - strand, within MPMX19_04918at 374.915 kb on + strand, within MPMX19_04918at 374.915 kb on + strand, within MPMX19_04918at 374.915 kb on + strand, within MPMX19_04918at 374.915 kb on + strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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372,218 + +1.1
372,218 + -1.1
372,442 + MPMX19_04916 0.26 -0.1
372,442 + MPMX19_04916 0.26 -1.6
372,442 + MPMX19_04916 0.26 +0.1
372,443 - MPMX19_04916 0.26 +0.5
372,443 - MPMX19_04916 0.26 +0.6
372,443 - MPMX19_04916 0.26 -0.5
372,640 + MPMX19_04916 0.67 -1.2
372,640 + MPMX19_04916 0.67 -0.9
372,641 - MPMX19_04916 0.67 -0.1
372,641 - MPMX19_04916 0.67 -0.7
372,641 - MPMX19_04916 0.67 -0.6
372,783 - -1.2
372,783 - -0.7
372,783 - -1.0
372,846 + -1.2
372,846 + -0.7
372,846 + -0.8
372,847 - -0.4
372,847 - -1.2
372,847 - +1.7
372,847 - -2.0
372,847 - +0.6
372,900 - -0.4
372,949 + -0.7
372,949 + -0.9
372,949 + -2.9
372,949 + +0.1
372,949 + +0.1
372,949 + -0.3
372,950 - -1.3
372,950 - +0.4
372,950 - -1.3
372,950 - -0.0
372,950 - -1.2
372,950 - -0.1
373,294 + MPMX19_04917 0.35 -1.2
373,294 + MPMX19_04917 0.35 +1.3
373,294 + MPMX19_04917 0.35 -1.7
373,294 + MPMX19_04917 0.35 -0.7
373,294 + MPMX19_04917 0.35 +0.7
373,295 - MPMX19_04917 0.35 -0.5
373,295 - MPMX19_04917 0.35 -3.0
373,295 - MPMX19_04917 0.35 -0.1
373,295 - MPMX19_04917 0.35 +0.4
373,295 - MPMX19_04917 0.35 +1.1
373,295 - MPMX19_04917 0.35 -0.9
373,295 - MPMX19_04917 0.35 +0.1
373,295 - MPMX19_04917 0.35 -0.1
373,295 - MPMX19_04917 0.35 -0.2
373,295 - MPMX19_04917 0.35 -0.1
373,295 - MPMX19_04917 0.35 +0.4
373,295 - MPMX19_04917 0.35 -0.5
373,825 + MPMX19_04917 0.86 -1.6
373,825 + MPMX19_04917 0.86 -0.2
373,825 + MPMX19_04917 0.86 -1.8
373,826 - MPMX19_04917 0.86 -0.0
373,826 - MPMX19_04917 0.86 +0.1
374,156 + MPMX19_04918 0.11 -1.5
374,156 + MPMX19_04918 0.11 +0.1
374,157 - MPMX19_04918 0.11 -0.1
374,399 + MPMX19_04918 0.31 +0.4
374,399 + MPMX19_04918 0.31 -0.7
374,400 - MPMX19_04918 0.31 +0.2
374,400 - MPMX19_04918 0.31 +0.5
374,486 + MPMX19_04918 0.38 -0.3
374,486 + MPMX19_04918 0.38 -0.1
374,486 + MPMX19_04918 0.38 -0.8
374,486 + MPMX19_04918 0.38 +0.2
374,486 + MPMX19_04918 0.38 -0.6
374,486 + MPMX19_04918 0.38 -0.2
374,486 + MPMX19_04918 0.38 -1.0
374,486 + MPMX19_04918 0.38 +0.4
374,486 + MPMX19_04918 0.38 -0.0
374,486 + MPMX19_04918 0.38 -1.5
374,487 - MPMX19_04918 0.38 -0.6
374,487 - MPMX19_04918 0.38 -0.0
374,487 - MPMX19_04918 0.38 +0.1
374,487 - MPMX19_04918 0.38 -0.3
374,487 - MPMX19_04918 0.38 -0.0
374,487 - MPMX19_04918 0.38 -1.2
374,514 - MPMX19_04918 0.41 -0.2
374,514 - MPMX19_04918 0.41 -1.1
374,514 - MPMX19_04918 0.41 -0.1
374,526 + MPMX19_04918 0.42 -1.6
374,526 + MPMX19_04918 0.42 -1.1
374,526 + MPMX19_04918 0.42 -0.6
374,526 + MPMX19_04918 0.42 -1.8
374,526 + MPMX19_04918 0.42 +0.2
374,526 + MPMX19_04918 0.42 -0.9
374,526 + MPMX19_04918 0.42 -1.4
374,526 + MPMX19_04918 0.42 -1.6
374,527 - MPMX19_04918 0.42 +1.6
374,527 - MPMX19_04918 0.42 -1.2
374,527 - MPMX19_04918 0.42 +0.5
374,527 - MPMX19_04918 0.42 -1.6
374,527 - MPMX19_04918 0.42 +0.0
374,527 - MPMX19_04918 0.42 -0.5
374,693 + MPMX19_04918 0.55 -1.0
374,693 + MPMX19_04918 0.55 -0.7
374,693 + MPMX19_04918 0.55 -1.8
374,694 - MPMX19_04918 0.56 -0.1
374,694 - MPMX19_04918 0.56 -0.8
374,694 - MPMX19_04918 0.56 -0.4
374,814 - MPMX19_04918 0.66 +0.1
374,867 + MPMX19_04918 0.70 -1.8
374,868 - MPMX19_04918 0.70 +0.9
374,868 - MPMX19_04918 0.70 +0.9
374,868 - MPMX19_04918 0.70 -0.9
374,903 + MPMX19_04918 0.73 -0.4
374,903 + MPMX19_04918 0.73 -2.1
374,904 - MPMX19_04918 0.73 -1.5
374,904 - MPMX19_04918 0.73 +0.5
374,904 - MPMX19_04918 0.73 -0.8
374,904 - MPMX19_04918 0.73 -0.7
374,904 - MPMX19_04918 0.73 -1.6
374,915 + MPMX19_04918 0.74 -0.3
374,915 + MPMX19_04918 0.74 -0.5
374,915 + MPMX19_04918 0.74 -1.0
374,915 + MPMX19_04918 0.74 -1.0
374,916 - MPMX19_04918 0.74 -0.7
374,916 - MPMX19_04918 0.74 -0.0
374,916 - MPMX19_04918 0.74 -1.5
374,916 - MPMX19_04918 0.74 -1.5
374,916 - MPMX19_04918 0.74 -0.2
374,916 - MPMX19_04918 0.74 -0.1
374,916 - MPMX19_04918 0.74 +1.1

Or see this region's nucleotide sequence