Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04901 and MPMX19_04902 overlap by 4 nucleotides MPMX19_04902 and MPMX19_04903 are separated by 337 nucleotides MPMX19_04903 and MPMX19_04904 are separated by 58 nucleotides
MPMX19_04901: MPMX19_04901 - 3-ketoacyl-CoA thiolase, at 351,864 to 353,000
_04901
MPMX19_04902: MPMX19_04902 - hypothetical protein, at 352,997 to 353,476
_04902
MPMX19_04903: MPMX19_04903 - hypothetical protein, at 353,814 to 354,002
_04903
MPMX19_04904: MPMX19_04904 - Alpha-2-macroglobulin, at 354,061 to 358,842
_04904
Position (kb) 353
354
355 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 353.160 kb on + strand, within MPMX19_04902 at 353.160 kb on + strand, within MPMX19_04902 at 353.160 kb on + strand, within MPMX19_04902 at 353.161 kb on - strand, within MPMX19_04902 at 353.161 kb on - strand, within MPMX19_04902 at 353.161 kb on - strand, within MPMX19_04902 at 353.196 kb on + strand, within MPMX19_04902 at 353.196 kb on + strand, within MPMX19_04902 at 353.196 kb on + strand, within MPMX19_04902 at 353.197 kb on - strand, within MPMX19_04902 at 353.289 kb on + strand, within MPMX19_04902 at 353.341 kb on - strand, within MPMX19_04902 at 353.341 kb on - strand, within MPMX19_04902 at 353.341 kb on - strand, within MPMX19_04902 at 353.341 kb on - strand, within MPMX19_04902 at 353.502 kb on + strand at 353.502 kb on + strand at 353.507 kb on - strand at 353.507 kb on - strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.651 kb on + strand at 353.651 kb on + strand at 353.651 kb on + strand at 353.651 kb on + strand at 353.651 kb on + strand at 353.652 kb on - strand at 353.652 kb on - strand at 353.652 kb on - strand at 353.652 kb on - strand at 353.652 kb on - strand at 353.759 kb on + strand at 353.759 kb on + strand at 353.759 kb on + strand at 353.759 kb on + strand at 353.760 kb on - strand at 353.760 kb on - strand at 353.760 kb on - strand at 353.833 kb on + strand, within MPMX19_04903 at 353.833 kb on + strand, within MPMX19_04903 at 353.833 kb on + strand, within MPMX19_04903 at 353.833 kb on + strand, within MPMX19_04903 at 353.834 kb on - strand, within MPMX19_04903 at 353.834 kb on - strand, within MPMX19_04903 at 353.852 kb on - strand, within MPMX19_04903 at 353.852 kb on - strand, within MPMX19_04903 at 353.904 kb on + strand, within MPMX19_04903 at 353.904 kb on + strand, within MPMX19_04903 at 353.904 kb on + strand, within MPMX19_04903 at 353.905 kb on - strand, within MPMX19_04903 at 353.905 kb on - strand, within MPMX19_04903 at 353.905 kb on - strand, within MPMX19_04903 at 353.905 kb on - strand, within MPMX19_04903 at 353.905 kb on - strand, within MPMX19_04903 at 353.905 kb on - strand, within MPMX19_04903 at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.995 kb on - strand at 353.995 kb on - strand at 353.995 kb on - strand at 353.995 kb on - strand at 353.995 kb on - strand at 353.995 kb on - strand at 353.995 kb on - strand at 353.995 kb on - strand at 353.995 kb on - strand at 353.995 kb on - strand at 353.995 kb on - strand at 354.000 kb on + strand at 354.000 kb on + strand at 354.000 kb on + strand at 354.000 kb on + strand at 354.001 kb on - strand at 354.001 kb on - strand at 354.001 kb on - strand at 354.001 kb on - strand at 354.001 kb on - strand at 354.001 kb on - strand at 354.001 kb on - strand at 354.044 kb on + strand at 354.182 kb on + strand at 354.182 kb on + strand at 354.182 kb on + strand at 354.183 kb on - strand at 354.183 kb on - strand at 354.183 kb on - strand at 354.183 kb on - strand at 354.986 kb on + strand, within MPMX19_04904 at 354.986 kb on + strand, within MPMX19_04904 at 354.986 kb on + strand, within MPMX19_04904 at 354.986 kb on + strand, within MPMX19_04904 at 354.986 kb on + strand, within MPMX19_04904 at 354.986 kb on + strand, within MPMX19_04904 at 354.986 kb on + strand, within MPMX19_04904 at 354.986 kb on + strand, within MPMX19_04904 at 354.986 kb on + strand, within MPMX19_04904 at 354.986 kb on + strand, within MPMX19_04904 at 354.986 kb on + strand, within MPMX19_04904 at 354.987 kb on - strand, within MPMX19_04904 at 354.987 kb on - strand, within MPMX19_04904 at 354.987 kb on - strand, within MPMX19_04904 at 354.987 kb on - strand, within MPMX19_04904 at 355.001 kb on + strand, within MPMX19_04904 at 355.001 kb on + strand, within MPMX19_04904 at 355.001 kb on + strand, within MPMX19_04904 at 355.002 kb on - strand, within MPMX19_04904 at 355.002 kb on - strand, within MPMX19_04904
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 353,160 + MPMX19_04902 0.34 -1.6 353,160 + MPMX19_04902 0.34 -0.1 353,160 + MPMX19_04902 0.34 -1.2 353,161 - MPMX19_04902 0.34 -1.1 353,161 - MPMX19_04902 0.34 -1.1 353,161 - MPMX19_04902 0.34 -0.1 353,196 + MPMX19_04902 0.41 -1.2 353,196 + MPMX19_04902 0.41 -0.7 353,196 + MPMX19_04902 0.41 +0.0 353,197 - MPMX19_04902 0.42 -1.9 353,289 + MPMX19_04902 0.61 -0.4 353,341 - MPMX19_04902 0.72 -0.1 353,341 - MPMX19_04902 0.72 -0.4 353,341 - MPMX19_04902 0.72 +1.6 353,341 - MPMX19_04902 0.72 -0.0 353,502 + -0.8 353,502 + +0.4 353,507 - +0.9 353,507 - +1.1 353,599 + +0.1 353,599 + -0.1 353,599 + -1.1 353,599 + +0.5 353,599 + -1.0 353,599 + -1.2 353,599 + -1.2 353,599 + -1.2 353,599 + +0.4 353,599 + -2.2 353,599 + +0.3 353,599 + +1.4 353,599 + -1.1 353,599 + -0.5 353,600 - -2.3 353,600 - +0.0 353,600 - -0.6 353,600 - +0.6 353,600 - -0.9 353,600 - +0.7 353,600 - -0.2 353,600 - -0.3 353,600 - +0.2 353,600 - -0.2 353,600 - -0.8 353,600 - -0.9 353,600 - +0.1 353,651 + -0.0 353,651 + -0.2 353,651 + -0.6 353,651 + -2.8 353,651 + +0.1 353,652 - -0.4 353,652 - -1.0 353,652 - -0.7 353,652 - -0.2 353,652 - -0.7 353,759 + -1.0 353,759 + -0.7 353,759 + -0.1 353,759 + -1.9 353,760 - -1.4 353,760 - +1.5 353,760 - -0.2 353,833 + MPMX19_04903 0.10 -2.0 353,833 + MPMX19_04903 0.10 -0.5 353,833 + MPMX19_04903 0.10 -2.5 353,833 + MPMX19_04903 0.10 -0.7 353,834 - MPMX19_04903 0.11 -0.7 353,834 - MPMX19_04903 0.11 -1.7 353,852 - MPMX19_04903 0.20 -0.5 353,852 - MPMX19_04903 0.20 -0.5 353,904 + MPMX19_04903 0.48 +0.8 353,904 + MPMX19_04903 0.48 +0.0 353,904 + MPMX19_04903 0.48 -0.1 353,905 - MPMX19_04903 0.48 -1.4 353,905 - MPMX19_04903 0.48 -0.5 353,905 - MPMX19_04903 0.48 -1.6 353,905 - MPMX19_04903 0.48 -2.7 353,905 - MPMX19_04903 0.48 +0.1 353,905 - MPMX19_04903 0.48 +0.7 353,994 + -0.4 353,994 + -0.5 353,994 + -0.2 353,994 + -1.9 353,994 + +0.2 353,994 + -0.5 353,994 + -0.1 353,994 + -0.1 353,994 + -0.7 353,994 + -0.4 353,994 + +0.7 353,994 + +0.2 353,994 + +0.3 353,994 + -0.3 353,994 + -0.3 353,994 + +0.6 353,994 + -0.9 353,995 - -1.3 353,995 - +0.0 353,995 - -0.7 353,995 - +1.6 353,995 - -1.1 353,995 - -0.3 353,995 - -1.0 353,995 - +0.1 353,995 - -1.5 353,995 - -1.1 353,995 - +0.3 354,000 + -0.5 354,000 + -2.0 354,000 + -0.7 354,000 + -0.2 354,001 - +0.5 354,001 - -1.8 354,001 - -1.0 354,001 - -0.0 354,001 - +0.5 354,001 - -0.5 354,001 - +0.1 354,044 + -0.7 354,182 + -0.2 354,182 + -0.9 354,182 + -1.2 354,183 - -1.2 354,183 - -0.8 354,183 - -0.7 354,183 - -2.6 354,986 + MPMX19_04904 0.19 +0.1 354,986 + MPMX19_04904 0.19 -0.4 354,986 + MPMX19_04904 0.19 -0.6 354,986 + MPMX19_04904 0.19 -0.5 354,986 + MPMX19_04904 0.19 +1.3 354,986 + MPMX19_04904 0.19 -1.2 354,986 + MPMX19_04904 0.19 -0.2 354,986 + MPMX19_04904 0.19 -0.6 354,986 + MPMX19_04904 0.19 +1.4 354,986 + MPMX19_04904 0.19 -1.7 354,986 + MPMX19_04904 0.19 -1.4 354,987 - MPMX19_04904 0.19 -1.1 354,987 - MPMX19_04904 0.19 -0.9 354,987 - MPMX19_04904 0.19 -0.1 354,987 - MPMX19_04904 0.19 +0.4 355,001 + MPMX19_04904 0.20 +2.8 355,001 + MPMX19_04904 0.20 -1.2 355,001 + MPMX19_04904 0.20 -1.3 355,002 - MPMX19_04904 0.20 -1.3 355,002 - MPMX19_04904 0.20 +1.1
Or see this region's nucleotide sequence