Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04888 and MPMX19_04889 are separated by 30 nucleotides MPMX19_04889 and MPMX19_04890 are separated by 132 nucleotides MPMX19_04890 and MPMX19_04891 are separated by 66 nucleotides
MPMX19_04888: MPMX19_04888 - hypothetical protein, at 335,439 to 336,491
_04888
MPMX19_04889: MPMX19_04889 - Chromosome partition protein Smc, at 336,522 to 339,983
_04889
MPMX19_04890: MPMX19_04890 - hypothetical protein, at 340,116 to 340,778
_04890
MPMX19_04891: MPMX19_04891 - hypothetical protein, at 340,845 to 341,318
_04891
Position (kb) 336
337
338
339
340 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 336.042 kb on + strand, within MPMX19_04888 at 336.042 kb on + strand, within MPMX19_04888 at 336.042 kb on + strand, within MPMX19_04888 at 336.042 kb on + strand, within MPMX19_04888 at 336.042 kb on + strand, within MPMX19_04888 at 336.042 kb on + strand, within MPMX19_04888 at 336.042 kb on + strand, within MPMX19_04888 at 336.042 kb on + strand, within MPMX19_04888 at 336.042 kb on + strand, within MPMX19_04888 at 336.042 kb on + strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.084 kb on + strand, within MPMX19_04888 at 336.084 kb on + strand, within MPMX19_04888 at 336.084 kb on + strand, within MPMX19_04888 at 336.084 kb on + strand, within MPMX19_04888 at 336.084 kb on + strand, within MPMX19_04888 at 336.084 kb on + strand, within MPMX19_04888 at 336.084 kb on + strand, within MPMX19_04888 at 336.085 kb on - strand, within MPMX19_04888 at 336.085 kb on - strand, within MPMX19_04888 at 336.085 kb on - strand, within MPMX19_04888 at 336.085 kb on - strand, within MPMX19_04888 at 336.085 kb on - strand, within MPMX19_04888 at 336.085 kb on - strand, within MPMX19_04888 at 336.086 kb on + strand, within MPMX19_04888 at 336.159 kb on + strand, within MPMX19_04888 at 336.159 kb on + strand, within MPMX19_04888 at 336.159 kb on + strand, within MPMX19_04888 at 336.159 kb on + strand, within MPMX19_04888 at 336.160 kb on - strand, within MPMX19_04888 at 336.160 kb on - strand, within MPMX19_04888 at 336.160 kb on - strand, within MPMX19_04888 at 336.160 kb on - strand, within MPMX19_04888 at 336.173 kb on + strand, within MPMX19_04888 at 336.174 kb on - strand, within MPMX19_04888 at 336.174 kb on - strand, within MPMX19_04888 at 336.174 kb on - strand, within MPMX19_04888 at 336.174 kb on - strand, within MPMX19_04888 at 336.174 kb on - strand, within MPMX19_04888 at 336.174 kb on - strand, within MPMX19_04888 at 336.231 kb on + strand, within MPMX19_04888 at 336.231 kb on + strand, within MPMX19_04888 at 336.231 kb on + strand, within MPMX19_04888 at 336.231 kb on + strand, within MPMX19_04888 at 336.232 kb on - strand, within MPMX19_04888 at 336.232 kb on - strand, within MPMX19_04888 at 336.232 kb on - strand, within MPMX19_04888 at 336.232 kb on - strand, within MPMX19_04888 at 336.435 kb on + strand at 336.435 kb on + strand at 336.435 kb on + strand at 336.436 kb on - strand at 336.436 kb on - strand at 336.456 kb on + strand at 336.456 kb on + strand at 336.456 kb on + strand at 336.457 kb on - strand at 336.457 kb on - strand at 336.523 kb on + strand at 336.524 kb on - strand at 336.524 kb on - strand at 336.524 kb on - strand at 336.524 kb on - strand at 336.524 kb on - strand at 336.871 kb on + strand, within MPMX19_04889 at 336.871 kb on + strand, within MPMX19_04889 at 336.871 kb on + strand, within MPMX19_04889 at 336.871 kb on + strand, within MPMX19_04889 at 336.871 kb on + strand, within MPMX19_04889 at 336.871 kb on + strand, within MPMX19_04889 at 336.871 kb on + strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.922 kb on + strand, within MPMX19_04889 at 336.923 kb on - strand, within MPMX19_04889 at 336.923 kb on - strand, within MPMX19_04889 at 337.292 kb on + strand, within MPMX19_04889 at 337.292 kb on + strand, within MPMX19_04889 at 337.292 kb on + strand, within MPMX19_04889 at 337.292 kb on + strand, within MPMX19_04889 at 337.293 kb on - strand, within MPMX19_04889 at 337.293 kb on - strand, within MPMX19_04889 at 337.293 kb on - strand, within MPMX19_04889 at 337.293 kb on - strand, within MPMX19_04889 at 337.293 kb on - strand, within MPMX19_04889 at 338.326 kb on + strand, within MPMX19_04889 at 338.326 kb on + strand, within MPMX19_04889 at 338.326 kb on + strand, within MPMX19_04889 at 338.327 kb on - strand, within MPMX19_04889 at 338.327 kb on - strand, within MPMX19_04889 at 338.327 kb on - strand, within MPMX19_04889 at 338.417 kb on - strand, within MPMX19_04889 at 339.641 kb on - strand at 340.003 kb on + strand at 340.003 kb on + strand at 340.003 kb on + strand at 340.004 kb on - strand at 340.004 kb on - strand at 340.104 kb on + strand at 340.104 kb on + strand at 340.104 kb on + strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.200 kb on - strand, within MPMX19_04890 at 340.225 kb on + strand, within MPMX19_04890 at 340.225 kb on + strand, within MPMX19_04890 at 340.225 kb on + strand, within MPMX19_04890 at 340.225 kb on + strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.409 kb on - strand, within MPMX19_04890 at 340.411 kb on + strand, within MPMX19_04890 at 340.411 kb on + strand, within MPMX19_04890 at 340.411 kb on + strand, within MPMX19_04890 at 340.412 kb on - strand, within MPMX19_04890 at 340.412 kb on - strand, within MPMX19_04890 at 340.513 kb on + strand, within MPMX19_04890 at 340.513 kb on + strand, within MPMX19_04890 at 340.513 kb on + strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.583 kb on - strand, within MPMX19_04890 at 340.750 kb on + strand at 340.751 kb on - strand at 340.793 kb on + strand at 340.794 kb on - strand at 340.794 kb on - strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.810 kb on + strand at 340.810 kb on + strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.823 kb on - strand at 340.823 kb on - strand at 340.823 kb on - strand at 340.823 kb on - strand at 340.823 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 336,042 + MPMX19_04888 0.57 -1.1 336,042 + MPMX19_04888 0.57 +0.4 336,042 + MPMX19_04888 0.57 -0.2 336,042 + MPMX19_04888 0.57 +0.4 336,042 + MPMX19_04888 0.57 -0.6 336,042 + MPMX19_04888 0.57 -1.5 336,042 + MPMX19_04888 0.57 -0.8 336,042 + MPMX19_04888 0.57 -1.5 336,042 + MPMX19_04888 0.57 +1.5 336,042 + MPMX19_04888 0.57 +0.1 336,043 - MPMX19_04888 0.57 -0.3 336,043 - MPMX19_04888 0.57 -2.1 336,043 - MPMX19_04888 0.57 -1.5 336,043 - MPMX19_04888 0.57 +0.0 336,043 - MPMX19_04888 0.57 -0.7 336,043 - MPMX19_04888 0.57 +0.3 336,043 - MPMX19_04888 0.57 -2.3 336,043 - MPMX19_04888 0.57 -0.1 336,043 - MPMX19_04888 0.57 -1.0 336,043 - MPMX19_04888 0.57 +0.5 336,043 - MPMX19_04888 0.57 -0.7 336,084 + MPMX19_04888 0.61 +0.5 336,084 + MPMX19_04888 0.61 -1.9 336,084 + MPMX19_04888 0.61 -0.5 336,084 + MPMX19_04888 0.61 +0.5 336,084 + MPMX19_04888 0.61 -0.3 336,084 + MPMX19_04888 0.61 +0.0 336,084 + MPMX19_04888 0.61 +0.8 336,085 - MPMX19_04888 0.61 +1.2 336,085 - MPMX19_04888 0.61 -0.5 336,085 - MPMX19_04888 0.61 -1.0 336,085 - MPMX19_04888 0.61 +0.7 336,085 - MPMX19_04888 0.61 -1.9 336,085 - MPMX19_04888 0.61 -0.9 336,086 + MPMX19_04888 0.61 +0.5 336,159 + MPMX19_04888 0.68 +0.6 336,159 + MPMX19_04888 0.68 -0.5 336,159 + MPMX19_04888 0.68 +0.0 336,159 + MPMX19_04888 0.68 +0.4 336,160 - MPMX19_04888 0.68 -0.4 336,160 - MPMX19_04888 0.68 +0.0 336,160 - MPMX19_04888 0.68 -0.9 336,160 - MPMX19_04888 0.68 -0.9 336,173 + MPMX19_04888 0.70 -1.5 336,174 - MPMX19_04888 0.70 +0.0 336,174 - MPMX19_04888 0.70 -1.1 336,174 - MPMX19_04888 0.70 -0.2 336,174 - MPMX19_04888 0.70 +0.4 336,174 - MPMX19_04888 0.70 -0.1 336,174 - MPMX19_04888 0.70 -0.5 336,231 + MPMX19_04888 0.75 -0.1 336,231 + MPMX19_04888 0.75 +0.3 336,231 + MPMX19_04888 0.75 -1.6 336,231 + MPMX19_04888 0.75 -0.2 336,232 - MPMX19_04888 0.75 -0.2 336,232 - MPMX19_04888 0.75 +0.2 336,232 - MPMX19_04888 0.75 +0.4 336,232 - MPMX19_04888 0.75 +0.1 336,435 + +0.6 336,435 + -0.7 336,435 + -0.9 336,436 - +0.3 336,436 - +0.2 336,456 + -0.9 336,456 + -1.2 336,456 + -2.0 336,457 - -0.9 336,457 - -0.7 336,523 + +0.4 336,524 - +0.0 336,524 - +0.0 336,524 - -0.4 336,524 - -0.6 336,524 - -3.1 336,871 + MPMX19_04889 0.10 -0.5 336,871 + MPMX19_04889 0.10 -0.7 336,871 + MPMX19_04889 0.10 +0.2 336,871 + MPMX19_04889 0.10 +0.3 336,871 + MPMX19_04889 0.10 -0.1 336,871 + MPMX19_04889 0.10 +0.1 336,871 + MPMX19_04889 0.10 +1.5 336,872 - MPMX19_04889 0.10 -0.1 336,872 - MPMX19_04889 0.10 -0.4 336,872 - MPMX19_04889 0.10 -2.0 336,872 - MPMX19_04889 0.10 -0.7 336,872 - MPMX19_04889 0.10 -1.6 336,872 - MPMX19_04889 0.10 -0.0 336,872 - MPMX19_04889 0.10 +0.3 336,872 - MPMX19_04889 0.10 -1.4 336,872 - MPMX19_04889 0.10 -0.6 336,872 - MPMX19_04889 0.10 -0.6 336,872 - MPMX19_04889 0.10 -1.4 336,872 - MPMX19_04889 0.10 -0.2 336,872 - MPMX19_04889 0.10 +1.8 336,872 - MPMX19_04889 0.10 -1.3 336,872 - MPMX19_04889 0.10 +0.5 336,872 - MPMX19_04889 0.10 -0.5 336,872 - MPMX19_04889 0.10 -0.9 336,872 - MPMX19_04889 0.10 +0.5 336,922 + MPMX19_04889 0.12 -0.2 336,923 - MPMX19_04889 0.12 -0.1 336,923 - MPMX19_04889 0.12 +0.8 337,292 + MPMX19_04889 0.22 -1.1 337,292 + MPMX19_04889 0.22 -0.2 337,292 + MPMX19_04889 0.22 -0.1 337,292 + MPMX19_04889 0.22 -0.9 337,293 - MPMX19_04889 0.22 -1.2 337,293 - MPMX19_04889 0.22 +0.7 337,293 - MPMX19_04889 0.22 -1.1 337,293 - MPMX19_04889 0.22 -0.7 337,293 - MPMX19_04889 0.22 -1.2 338,326 + MPMX19_04889 0.52 +0.1 338,326 + MPMX19_04889 0.52 -1.2 338,326 + MPMX19_04889 0.52 +0.5 338,327 - MPMX19_04889 0.52 +0.5 338,327 - MPMX19_04889 0.52 -0.9 338,327 - MPMX19_04889 0.52 -1.2 338,417 - MPMX19_04889 0.55 +0.9 339,641 - +0.1 340,003 + -0.0 340,003 + -1.2 340,003 + -0.9 340,004 - -0.9 340,004 - -0.9 340,104 + -1.3 340,104 + -0.2 340,104 + -1.4 340,105 - -1.0 340,105 - -0.6 340,105 - -0.1 340,105 - -0.7 340,105 - -1.6 340,105 - -1.4 340,117 + -0.4 340,117 + +0.3 340,117 + -1.3 340,117 + -1.9 340,117 + -0.8 340,117 + -2.3 340,117 + -0.7 340,118 - +0.1 340,118 - +0.4 340,118 - -0.6 340,118 - -1.6 340,118 - +0.1 340,118 - -1.8 340,118 - -1.1 340,118 - -0.4 340,118 - -0.2 340,118 - -0.7 340,118 - +0.8 340,118 - -0.6 340,118 - -0.7 340,118 - -0.9 340,118 - -1.4 340,118 - +0.1 340,200 - MPMX19_04890 0.13 -0.5 340,225 + MPMX19_04890 0.16 -1.2 340,225 + MPMX19_04890 0.16 +0.2 340,225 + MPMX19_04890 0.16 -1.1 340,225 + MPMX19_04890 0.16 +0.2 340,226 - MPMX19_04890 0.17 -0.6 340,226 - MPMX19_04890 0.17 +1.1 340,226 - MPMX19_04890 0.17 +0.4 340,226 - MPMX19_04890 0.17 +0.3 340,226 - MPMX19_04890 0.17 -0.7 340,226 - MPMX19_04890 0.17 -1.0 340,409 - MPMX19_04890 0.44 -1.7 340,411 + MPMX19_04890 0.44 -0.2 340,411 + MPMX19_04890 0.44 -1.8 340,411 + MPMX19_04890 0.44 +1.4 340,412 - MPMX19_04890 0.45 +0.3 340,412 - MPMX19_04890 0.45 -0.4 340,513 + MPMX19_04890 0.60 +0.4 340,513 + MPMX19_04890 0.60 -0.5 340,513 + MPMX19_04890 0.60 +0.5 340,514 - MPMX19_04890 0.60 -0.6 340,514 - MPMX19_04890 0.60 +0.1 340,514 - MPMX19_04890 0.60 -1.0 340,514 - MPMX19_04890 0.60 +0.8 340,514 - MPMX19_04890 0.60 +0.7 340,514 - MPMX19_04890 0.60 -0.9 340,583 - MPMX19_04890 0.70 +0.1 340,750 + -1.7 340,751 - -0.9 340,793 + -0.2 340,794 - -1.8 340,794 - +0.5 340,808 + -0.7 340,808 + -1.6 340,808 + +0.2 340,808 + -0.1 340,808 + +1.6 340,808 + +0.2 340,808 + -0.1 340,808 + -0.2 340,808 + -1.8 340,808 + -1.2 340,808 + +0.9 340,808 + +0.3 340,809 - -0.5 340,809 - -1.9 340,809 - -0.7 340,809 - -0.4 340,809 - -0.7 340,809 - -0.8 340,809 - -0.8 340,809 - -1.6 340,809 - -1.1 340,809 - -0.7 340,809 - -0.2 340,809 - -0.7 340,809 - +0.9 340,809 - -0.1 340,810 + +0.9 340,810 + +0.4 340,811 - -0.4 340,811 - -0.4 340,811 - +0.4 340,811 - -0.1 340,811 - -0.3 340,811 - -1.1 340,811 - -0.7 340,811 - -0.2 340,811 - -0.8 340,811 - -0.2 340,822 + -0.5 340,822 + -0.2 340,822 + -1.2 340,822 + -0.1 340,822 + +1.7 340,823 - -0.7 340,823 - -1.6 340,823 - -1.1 340,823 - -1.8 340,823 - +1.8
Or see this region's nucleotide sequence