Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04883

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04882 and MPMX19_04883 are separated by 100 nucleotidesMPMX19_04883 and MPMX19_04884 are separated by 678 nucleotides MPMX19_04882: MPMX19_04882 - Spermidine/putrescine import ATP-binding protein PotA, at 325,569 to 326,732 _04882 MPMX19_04883: MPMX19_04883 - Spermidine-binding periplasmic protein SpuE, at 326,833 to 327,930 _04883 MPMX19_04884: MPMX19_04884 - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 328,609 to 328,983 _04884 Position (kb) 326 327 328Strain fitness (log2 ratio) -2 -1 0 1 2at 326.008 kb on + strand, within MPMX19_04882at 326.008 kb on + strand, within MPMX19_04882at 326.008 kb on + strand, within MPMX19_04882at 326.008 kb on + strand, within MPMX19_04882at 326.009 kb on - strand, within MPMX19_04882at 326.009 kb on - strand, within MPMX19_04882at 326.009 kb on - strand, within MPMX19_04882at 326.422 kb on + strand, within MPMX19_04882at 326.422 kb on + strand, within MPMX19_04882at 326.423 kb on - strand, within MPMX19_04882at 326.423 kb on - strand, within MPMX19_04882at 326.455 kb on + strand, within MPMX19_04882at 326.455 kb on + strand, within MPMX19_04882at 326.456 kb on - strand, within MPMX19_04882at 326.456 kb on - strand, within MPMX19_04882at 326.491 kb on + strand, within MPMX19_04882at 326.491 kb on + strand, within MPMX19_04882at 326.491 kb on + strand, within MPMX19_04882at 326.491 kb on + strand, within MPMX19_04882at 326.491 kb on + strand, within MPMX19_04882at 326.491 kb on + strand, within MPMX19_04882at 326.491 kb on + strand, within MPMX19_04882at 326.491 kb on + strand, within MPMX19_04882at 326.491 kb on + strand, within MPMX19_04882at 326.491 kb on + strand, within MPMX19_04882at 326.491 kb on + strand, within MPMX19_04882at 326.491 kb on + strand, within MPMX19_04882at 326.491 kb on + strand, within MPMX19_04882at 326.491 kb on + strand, within MPMX19_04882at 326.491 kb on + strand, within MPMX19_04882at 326.492 kb on - strand, within MPMX19_04882at 326.492 kb on - strand, within MPMX19_04882at 326.492 kb on - strand, within MPMX19_04882at 326.492 kb on - strand, within MPMX19_04882at 326.492 kb on - strand, within MPMX19_04882at 326.492 kb on - strand, within MPMX19_04882at 326.593 kb on + strand, within MPMX19_04882at 326.593 kb on + strand, within MPMX19_04882at 326.594 kb on - strand, within MPMX19_04882at 326.665 kb on + strandat 326.665 kb on + strandat 326.665 kb on + strandat 326.665 kb on + strandat 326.665 kb on + strandat 326.665 kb on + strandat 326.666 kb on - strandat 326.666 kb on - strandat 326.666 kb on - strandat 326.666 kb on - strandat 326.666 kb on - strandat 326.666 kb on - strandat 326.666 kb on - strandat 326.666 kb on - strandat 326.820 kb on - strandat 326.820 kb on - strandat 326.834 kb on + strandat 326.834 kb on + strandat 326.834 kb on + strandat 326.835 kb on - strandat 326.835 kb on - strandat 326.835 kb on - strandat 326.835 kb on - strandat 327.005 kb on + strand, within MPMX19_04883at 327.005 kb on + strand, within MPMX19_04883at 327.006 kb on - strand, within MPMX19_04883at 327.006 kb on - strand, within MPMX19_04883at 327.006 kb on - strand, within MPMX19_04883at 327.006 kb on - strand, within MPMX19_04883at 327.062 kb on + strand, within MPMX19_04883at 327.062 kb on + strand, within MPMX19_04883at 327.062 kb on + strand, within MPMX19_04883at 327.062 kb on + strand, within MPMX19_04883at 327.062 kb on + strand, within MPMX19_04883at 327.062 kb on + strand, within MPMX19_04883at 327.062 kb on + strand, within MPMX19_04883at 327.062 kb on + strand, within MPMX19_04883at 327.062 kb on + strand, within MPMX19_04883at 327.062 kb on + strand, within MPMX19_04883at 327.062 kb on + strand, within MPMX19_04883at 327.062 kb on + strand, within MPMX19_04883at 327.062 kb on + strand, within MPMX19_04883at 327.062 kb on + strand, within MPMX19_04883at 327.063 kb on - strand, within MPMX19_04883at 327.063 kb on - strand, within MPMX19_04883at 327.063 kb on - strand, within MPMX19_04883at 327.063 kb on - strand, within MPMX19_04883at 327.063 kb on - strand, within MPMX19_04883at 327.063 kb on - strand, within MPMX19_04883at 327.068 kb on + strand, within MPMX19_04883at 327.149 kb on + strand, within MPMX19_04883at 327.149 kb on + strand, within MPMX19_04883at 327.149 kb on + strand, within MPMX19_04883at 327.149 kb on + strand, within MPMX19_04883at 327.149 kb on + strand, within MPMX19_04883at 327.149 kb on + strand, within MPMX19_04883at 327.149 kb on + strand, within MPMX19_04883at 327.149 kb on + strand, within MPMX19_04883at 327.149 kb on + strand, within MPMX19_04883at 327.149 kb on + strand, within MPMX19_04883at 327.149 kb on + strand, within MPMX19_04883at 327.150 kb on - strand, within MPMX19_04883at 327.150 kb on - strand, within MPMX19_04883at 327.150 kb on - strand, within MPMX19_04883at 327.150 kb on - strand, within MPMX19_04883at 327.150 kb on - strand, within MPMX19_04883at 327.150 kb on - strand, within MPMX19_04883at 327.150 kb on - strand, within MPMX19_04883at 327.150 kb on - strand, within MPMX19_04883at 327.150 kb on - strand, within MPMX19_04883at 327.212 kb on + strand, within MPMX19_04883at 327.212 kb on + strand, within MPMX19_04883at 327.213 kb on - strand, within MPMX19_04883at 327.213 kb on - strand, within MPMX19_04883at 327.284 kb on + strand, within MPMX19_04883at 327.284 kb on + strand, within MPMX19_04883at 327.285 kb on - strand, within MPMX19_04883at 327.285 kb on - strand, within MPMX19_04883at 327.285 kb on - strand, within MPMX19_04883at 327.362 kb on + strand, within MPMX19_04883at 327.362 kb on + strand, within MPMX19_04883at 327.362 kb on + strand, within MPMX19_04883at 327.362 kb on + strand, within MPMX19_04883at 327.362 kb on + strand, within MPMX19_04883at 327.363 kb on - strand, within MPMX19_04883at 327.363 kb on - strand, within MPMX19_04883at 327.363 kb on - strand, within MPMX19_04883at 327.363 kb on - strand, within MPMX19_04883at 327.363 kb on - strand, within MPMX19_04883at 327.363 kb on - strand, within MPMX19_04883at 327.551 kb on + strand, within MPMX19_04883at 327.551 kb on + strand, within MPMX19_04883at 327.551 kb on + strand, within MPMX19_04883at 327.552 kb on - strand, within MPMX19_04883at 327.611 kb on + strand, within MPMX19_04883at 327.611 kb on + strand, within MPMX19_04883at 327.611 kb on + strand, within MPMX19_04883at 327.611 kb on + strand, within MPMX19_04883at 327.611 kb on + strand, within MPMX19_04883at 327.612 kb on - strand, within MPMX19_04883at 327.612 kb on - strand, within MPMX19_04883at 327.612 kb on - strand, within MPMX19_04883at 327.612 kb on - strand, within MPMX19_04883at 327.612 kb on - strand, within MPMX19_04883at 327.704 kb on + strand, within MPMX19_04883at 327.704 kb on + strand, within MPMX19_04883at 327.705 kb on - strand, within MPMX19_04883at 327.705 kb on - strand, within MPMX19_04883at 327.755 kb on + strand, within MPMX19_04883at 327.755 kb on + strand, within MPMX19_04883at 327.755 kb on + strand, within MPMX19_04883at 327.756 kb on - strand, within MPMX19_04883at 327.821 kb on + strandat 327.822 kb on - strandat 327.822 kb on - strandat 327.836 kb on + strandat 327.836 kb on + strandat 327.836 kb on + strandat 327.837 kb on - strandat 327.837 kb on - strandat 327.837 kb on - strandat 327.837 kb on - strandat 327.837 kb on - strandat 327.837 kb on - strandat 327.837 kb on - strandat 327.837 kb on - strandat 328.003 kb on + strandat 328.119 kb on + strandat 328.119 kb on + strandat 328.119 kb on + strandat 328.119 kb on + strandat 328.119 kb on + strandat 328.120 kb on - strandat 328.120 kb on - strandat 328.120 kb on - strandat 328.120 kb on - strandat 328.120 kb on - strandat 328.156 kb on + strandat 328.156 kb on + strandat 328.156 kb on + strandat 328.157 kb on - strandat 328.157 kb on - strandat 328.345 kb on + strandat 328.363 kb on + strandat 328.364 kb on - strandat 328.379 kb on + strandat 328.379 kb on + strandat 328.391 kb on + strandat 328.391 kb on + strandat 328.391 kb on + strandat 328.392 kb on - strandat 328.417 kb on + strandat 328.477 kb on + strandat 328.477 kb on + strandat 328.478 kb on - strandat 328.478 kb on - strandat 328.538 kb on + strandat 328.539 kb on - strandat 328.610 kb on + strandat 328.611 kb on - strandat 328.611 kb on - strandat 328.611 kb on - strandat 328.713 kb on + strand, within MPMX19_04884at 328.713 kb on + strand, within MPMX19_04884at 328.713 kb on + strand, within MPMX19_04884at 328.713 kb on + strand, within MPMX19_04884at 328.713 kb on + strand, within MPMX19_04884at 328.713 kb on + strand, within MPMX19_04884at 328.713 kb on + strand, within MPMX19_04884at 328.713 kb on + strand, within MPMX19_04884at 328.714 kb on - strand, within MPMX19_04884at 328.714 kb on - strand, within MPMX19_04884at 328.714 kb on - strand, within MPMX19_04884at 328.714 kb on - strand, within MPMX19_04884at 328.714 kb on - strand, within MPMX19_04884at 328.714 kb on - strand, within MPMX19_04884at 328.714 kb on - strand, within MPMX19_04884at 328.717 kb on + strand, within MPMX19_04884at 328.718 kb on - strand, within MPMX19_04884at 328.718 kb on - strand, within MPMX19_04884at 328.718 kb on - strand, within MPMX19_04884at 328.718 kb on - strand, within MPMX19_04884at 328.718 kb on - strand, within MPMX19_04884at 328.742 kb on + strand, within MPMX19_04884at 328.742 kb on + strand, within MPMX19_04884at 328.742 kb on + strand, within MPMX19_04884at 328.743 kb on - strand, within MPMX19_04884at 328.743 kb on - strand, within MPMX19_04884at 328.743 kb on - strand, within MPMX19_04884at 328.743 kb on - strand, within MPMX19_04884

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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326,008 + MPMX19_04882 0.38 +0.5
326,008 + MPMX19_04882 0.38 +1.1
326,008 + MPMX19_04882 0.38 -0.1
326,008 + MPMX19_04882 0.38 -0.9
326,009 - MPMX19_04882 0.38 -0.2
326,009 - MPMX19_04882 0.38 +0.5
326,009 - MPMX19_04882 0.38 -0.2
326,422 + MPMX19_04882 0.73 +0.1
326,422 + MPMX19_04882 0.73 -0.6
326,423 - MPMX19_04882 0.73 +0.4
326,423 - MPMX19_04882 0.73 +0.1
326,455 + MPMX19_04882 0.76 +0.7
326,455 + MPMX19_04882 0.76 -0.8
326,456 - MPMX19_04882 0.76 -1.2
326,456 - MPMX19_04882 0.76 -1.1
326,491 + MPMX19_04882 0.79 -1.4
326,491 + MPMX19_04882 0.79 +0.5
326,491 + MPMX19_04882 0.79 +0.5
326,491 + MPMX19_04882 0.79 -1.1
326,491 + MPMX19_04882 0.79 +0.9
326,491 + MPMX19_04882 0.79 +0.1
326,491 + MPMX19_04882 0.79 -0.4
326,491 + MPMX19_04882 0.79 -2.1
326,491 + MPMX19_04882 0.79 -1.2
326,491 + MPMX19_04882 0.79 -1.7
326,491 + MPMX19_04882 0.79 -1.7
326,491 + MPMX19_04882 0.79 -0.8
326,491 + MPMX19_04882 0.79 -0.9
326,491 + MPMX19_04882 0.79 +0.1
326,491 + MPMX19_04882 0.79 -1.1
326,492 - MPMX19_04882 0.79 -0.9
326,492 - MPMX19_04882 0.79 -0.1
326,492 - MPMX19_04882 0.79 -1.4
326,492 - MPMX19_04882 0.79 -0.9
326,492 - MPMX19_04882 0.79 +0.4
326,492 - MPMX19_04882 0.79 +2.1
326,593 + MPMX19_04882 0.88 -1.8
326,593 + MPMX19_04882 0.88 -0.9
326,594 - MPMX19_04882 0.88 -1.1
326,665 + -0.4
326,665 + -1.5
326,665 + -1.2
326,665 + +0.2
326,665 + -0.7
326,665 + +0.8
326,666 - -0.2
326,666 - -1.4
326,666 - -1.6
326,666 - -1.1
326,666 - +0.7
326,666 - -0.7
326,666 - +1.1
326,666 - -0.9
326,820 - -0.2
326,820 - -0.2
326,834 + +0.1
326,834 + +0.5
326,834 + +0.8
326,835 - -1.6
326,835 - +1.1
326,835 - -0.9
326,835 - -0.6
327,005 + MPMX19_04883 0.16 +0.1
327,005 + MPMX19_04883 0.16 -1.2
327,006 - MPMX19_04883 0.16 -0.9
327,006 - MPMX19_04883 0.16 -0.5
327,006 - MPMX19_04883 0.16 -1.5
327,006 - MPMX19_04883 0.16 -0.5
327,062 + MPMX19_04883 0.21 +0.1
327,062 + MPMX19_04883 0.21 +1.3
327,062 + MPMX19_04883 0.21 -1.7
327,062 + MPMX19_04883 0.21 +0.2
327,062 + MPMX19_04883 0.21 +1.1
327,062 + MPMX19_04883 0.21 -0.6
327,062 + MPMX19_04883 0.21 -1.6
327,062 + MPMX19_04883 0.21 +1.1
327,062 + MPMX19_04883 0.21 -0.9
327,062 + MPMX19_04883 0.21 -0.7
327,062 + MPMX19_04883 0.21 -0.7
327,062 + MPMX19_04883 0.21 -0.4
327,062 + MPMX19_04883 0.21 +1.1
327,062 + MPMX19_04883 0.21 -0.0
327,063 - MPMX19_04883 0.21 -0.9
327,063 - MPMX19_04883 0.21 -0.0
327,063 - MPMX19_04883 0.21 +0.1
327,063 - MPMX19_04883 0.21 -0.1
327,063 - MPMX19_04883 0.21 -0.1
327,063 - MPMX19_04883 0.21 -0.7
327,068 + MPMX19_04883 0.21 -0.2
327,149 + MPMX19_04883 0.29 +0.2
327,149 + MPMX19_04883 0.29 +1.3
327,149 + MPMX19_04883 0.29 +1.1
327,149 + MPMX19_04883 0.29 +1.1
327,149 + MPMX19_04883 0.29 -0.7
327,149 + MPMX19_04883 0.29 +0.1
327,149 + MPMX19_04883 0.29 -1.1
327,149 + MPMX19_04883 0.29 -0.1
327,149 + MPMX19_04883 0.29 -2.5
327,149 + MPMX19_04883 0.29 +1.1
327,149 + MPMX19_04883 0.29 -1.2
327,150 - MPMX19_04883 0.29 -1.2
327,150 - MPMX19_04883 0.29 +0.8
327,150 - MPMX19_04883 0.29 -1.2
327,150 - MPMX19_04883 0.29 -1.1
327,150 - MPMX19_04883 0.29 -1.2
327,150 - MPMX19_04883 0.29 +0.3
327,150 - MPMX19_04883 0.29 +0.1
327,150 - MPMX19_04883 0.29 -0.4
327,150 - MPMX19_04883 0.29 -0.5
327,212 + MPMX19_04883 0.35 -0.1
327,212 + MPMX19_04883 0.35 -0.9
327,213 - MPMX19_04883 0.35 -1.0
327,213 - MPMX19_04883 0.35 -0.5
327,284 + MPMX19_04883 0.41 +0.5
327,284 + MPMX19_04883 0.41 -1.8
327,285 - MPMX19_04883 0.41 -0.5
327,285 - MPMX19_04883 0.41 -0.9
327,285 - MPMX19_04883 0.41 -1.1
327,362 + MPMX19_04883 0.48 +0.5
327,362 + MPMX19_04883 0.48 -0.2
327,362 + MPMX19_04883 0.48 +0.5
327,362 + MPMX19_04883 0.48 -0.7
327,362 + MPMX19_04883 0.48 -1.2
327,363 - MPMX19_04883 0.48 -0.2
327,363 - MPMX19_04883 0.48 -0.5
327,363 - MPMX19_04883 0.48 +0.1
327,363 - MPMX19_04883 0.48 -1.4
327,363 - MPMX19_04883 0.48 -0.7
327,363 - MPMX19_04883 0.48 -0.5
327,551 + MPMX19_04883 0.65 -2.2
327,551 + MPMX19_04883 0.65 -0.5
327,551 + MPMX19_04883 0.65 -1.5
327,552 - MPMX19_04883 0.65 -1.1
327,611 + MPMX19_04883 0.71 +0.8
327,611 + MPMX19_04883 0.71 -0.5
327,611 + MPMX19_04883 0.71 +0.3
327,611 + MPMX19_04883 0.71 -1.5
327,611 + MPMX19_04883 0.71 -0.9
327,612 - MPMX19_04883 0.71 -0.9
327,612 - MPMX19_04883 0.71 -1.3
327,612 - MPMX19_04883 0.71 +0.4
327,612 - MPMX19_04883 0.71 -0.2
327,612 - MPMX19_04883 0.71 +0.5
327,704 + MPMX19_04883 0.79 -0.5
327,704 + MPMX19_04883 0.79 +0.5
327,705 - MPMX19_04883 0.79 +2.1
327,705 - MPMX19_04883 0.79 -1.0
327,755 + MPMX19_04883 0.84 -1.4
327,755 + MPMX19_04883 0.84 +0.4
327,755 + MPMX19_04883 0.84 -1.7
327,756 - MPMX19_04883 0.84 +2.7
327,821 + -1.1
327,822 - +0.4
327,822 - -0.2
327,836 + -0.9
327,836 + -0.9
327,836 + +0.6
327,837 - -0.2
327,837 - +1.7
327,837 - -0.2
327,837 - +1.5
327,837 - -0.5
327,837 - +0.1
327,837 - -0.6
327,837 - +0.1
328,003 + +0.8
328,119 + -0.1
328,119 + -1.3
328,119 + +0.1
328,119 + -0.1
328,119 + -0.1
328,120 - -0.6
328,120 - -0.2
328,120 - -0.4
328,120 - -0.3
328,120 - -1.0
328,156 + -0.1
328,156 + -0.9
328,156 + -2.1
328,157 - -1.0
328,157 - -1.5
328,345 + -2.7
328,363 + +0.1
328,364 - -0.5
328,379 + -0.9
328,379 + +0.6
328,391 + -0.9
328,391 + -1.2
328,391 + -0.1
328,392 - +0.5
328,417 + +0.5
328,477 + +0.3
328,477 + -0.8
328,478 - -0.5
328,478 - -2.1
328,538 + +2.1
328,539 - +1.0
328,610 + -1.4
328,611 - -1.0
328,611 - -1.2
328,611 - -2.3
328,713 + MPMX19_04884 0.28 +0.3
328,713 + MPMX19_04884 0.28 -0.5
328,713 + MPMX19_04884 0.28 -0.0
328,713 + MPMX19_04884 0.28 -0.6
328,713 + MPMX19_04884 0.28 -1.1
328,713 + MPMX19_04884 0.28 -0.7
328,713 + MPMX19_04884 0.28 -0.9
328,713 + MPMX19_04884 0.28 -1.2
328,714 - MPMX19_04884 0.28 -1.0
328,714 - MPMX19_04884 0.28 -0.5
328,714 - MPMX19_04884 0.28 -0.7
328,714 - MPMX19_04884 0.28 -0.5
328,714 - MPMX19_04884 0.28 +0.1
328,714 - MPMX19_04884 0.28 -1.2
328,714 - MPMX19_04884 0.28 -1.5
328,717 + MPMX19_04884 0.29 +0.1
328,718 - MPMX19_04884 0.29 -1.7
328,718 - MPMX19_04884 0.29 -0.6
328,718 - MPMX19_04884 0.29 -0.8
328,718 - MPMX19_04884 0.29 +0.1
328,718 - MPMX19_04884 0.29 +0.5
328,742 + MPMX19_04884 0.35 +0.6
328,742 + MPMX19_04884 0.35 +0.2
328,742 + MPMX19_04884 0.35 -1.1
328,743 - MPMX19_04884 0.36 +1.5
328,743 - MPMX19_04884 0.36 +0.2
328,743 - MPMX19_04884 0.36 -1.3
328,743 - MPMX19_04884 0.36 -1.6

Or see this region's nucleotide sequence