Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04878

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04877 and MPMX19_04878 are separated by 114 nucleotidesMPMX19_04878 and MPMX19_04879 are separated by 293 nucleotidesMPMX19_04879 and MPMX19_04880 are separated by 127 nucleotides MPMX19_04877: MPMX19_04877 - hypothetical protein, at 320,210 to 322,096 _04877 MPMX19_04878: MPMX19_04878 - Agmatine deiminase, at 322,211 to 323,254 _04878 MPMX19_04879: MPMX19_04879 - hypothetical protein, at 323,548 to 323,670 _04879 MPMX19_04880: MPMX19_04880 - Inner membrane ABC transporter permease protein YdcV, at 323,798 to 324,631 _04880 Position (kb) 322 323 324Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 321.306 kb on + strand, within MPMX19_04877at 321.306 kb on + strand, within MPMX19_04877at 321.306 kb on + strand, within MPMX19_04877at 321.306 kb on + strand, within MPMX19_04877at 321.306 kb on + strand, within MPMX19_04877at 321.306 kb on + strand, within MPMX19_04877at 321.307 kb on - strand, within MPMX19_04877at 321.307 kb on - strand, within MPMX19_04877at 321.307 kb on - strand, within MPMX19_04877at 321.307 kb on - strand, within MPMX19_04877at 321.307 kb on - strand, within MPMX19_04877at 321.307 kb on - strand, within MPMX19_04877at 321.340 kb on - strand, within MPMX19_04877at 321.771 kb on + strand, within MPMX19_04877at 321.771 kb on + strand, within MPMX19_04877at 321.771 kb on + strand, within MPMX19_04877at 321.771 kb on + strand, within MPMX19_04877at 321.771 kb on + strand, within MPMX19_04877at 321.771 kb on + strand, within MPMX19_04877at 321.771 kb on + strand, within MPMX19_04877at 321.771 kb on + strand, within MPMX19_04877at 321.771 kb on + strand, within MPMX19_04877at 321.772 kb on - strand, within MPMX19_04877at 321.772 kb on - strand, within MPMX19_04877at 321.772 kb on - strand, within MPMX19_04877at 321.772 kb on - strand, within MPMX19_04877at 321.772 kb on - strand, within MPMX19_04877at 321.772 kb on - strand, within MPMX19_04877at 321.772 kb on - strand, within MPMX19_04877at 321.978 kb on + strandat 321.978 kb on + strandat 321.978 kb on + strandat 321.978 kb on + strandat 321.978 kb on + strandat 321.978 kb on + strandat 321.978 kb on + strandat 321.978 kb on + strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 321.979 kb on - strandat 322.070 kb on + strandat 322.070 kb on + strandat 322.070 kb on + strandat 322.070 kb on + strandat 322.071 kb on - strandat 322.270 kb on - strandat 322.386 kb on + strand, within MPMX19_04878at 322.386 kb on + strand, within MPMX19_04878at 322.386 kb on + strand, within MPMX19_04878at 322.386 kb on + strand, within MPMX19_04878at 322.386 kb on + strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.387 kb on - strand, within MPMX19_04878at 322.398 kb on + strand, within MPMX19_04878at 322.398 kb on + strand, within MPMX19_04878at 322.399 kb on - strand, within MPMX19_04878at 322.399 kb on - strand, within MPMX19_04878at 322.399 kb on - strand, within MPMX19_04878at 322.399 kb on - strand, within MPMX19_04878at 322.629 kb on + strand, within MPMX19_04878at 322.629 kb on + strand, within MPMX19_04878at 322.629 kb on + strand, within MPMX19_04878at 322.629 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 323.097 kb on + strand, within MPMX19_04878at 323.097 kb on + strand, within MPMX19_04878at 323.097 kb on + strand, within MPMX19_04878at 323.097 kb on + strand, within MPMX19_04878at 323.097 kb on + strand, within MPMX19_04878at 323.098 kb on - strand, within MPMX19_04878at 323.268 kb on + strandat 323.269 kb on - strandat 323.438 kb on + strandat 323.438 kb on + strandat 323.439 kb on - strandat 323.439 kb on - strandat 323.439 kb on - strandat 323.439 kb on - strandat 323.550 kb on - strandat 323.606 kb on + strand, within MPMX19_04879at 323.607 kb on - strand, within MPMX19_04879at 323.708 kb on + strandat 323.708 kb on + strandat 323.708 kb on + strandat 323.708 kb on + strandat 323.709 kb on - strandat 323.709 kb on - strandat 323.709 kb on - strandat 323.709 kb on - strandat 323.709 kb on - strandat 323.709 kb on - strandat 323.709 kb on - strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.769 kb on - strandat 323.769 kb on - strandat 323.769 kb on - strandat 323.769 kb on - strandat 323.769 kb on - strandat 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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321,306 + MPMX19_04877 0.58 -2.9
321,306 + MPMX19_04877 0.58 +0.5
321,306 + MPMX19_04877 0.58 +0.1
321,306 + MPMX19_04877 0.58 -0.7
321,306 + MPMX19_04877 0.58 -1.7
321,306 + MPMX19_04877 0.58 -0.9
321,307 - MPMX19_04877 0.58 +1.1
321,307 - MPMX19_04877 0.58 -0.8
321,307 - MPMX19_04877 0.58 -1.4
321,307 - MPMX19_04877 0.58 -0.7
321,307 - MPMX19_04877 0.58 +0.8
321,307 - MPMX19_04877 0.58 +0.2
321,340 - MPMX19_04877 0.60 -0.1
321,771 + MPMX19_04877 0.83 -1.4
321,771 + MPMX19_04877 0.83 +0.0
321,771 + MPMX19_04877 0.83 -0.4
321,771 + MPMX19_04877 0.83 +0.4
321,771 + MPMX19_04877 0.83 +1.3
321,771 + MPMX19_04877 0.83 -1.4
321,771 + MPMX19_04877 0.83 +0.5
321,771 + MPMX19_04877 0.83 -1.1
321,771 + MPMX19_04877 0.83 -1.0
321,772 - MPMX19_04877 0.83 -0.2
321,772 - MPMX19_04877 0.83 -0.2
321,772 - MPMX19_04877 0.83 -0.8
321,772 - MPMX19_04877 0.83 +0.5
321,772 - MPMX19_04877 0.83 -0.0
321,772 - MPMX19_04877 0.83 +0.5
321,772 - MPMX19_04877 0.83 +0.1
321,978 + -0.0
321,978 + +0.1
321,978 + -0.2
321,978 + +1.4
321,978 + -0.1
321,978 + +0.6
321,978 + +0.3
321,978 + -1.4
321,979 - +0.5
321,979 - -0.2
321,979 - -0.0
321,979 - -1.4
321,979 - +0.1
321,979 - -1.2
321,979 - -0.2
321,979 - -1.1
321,979 - -0.5
321,979 - -0.7
321,979 - -0.6
321,979 - +0.5
322,070 + -2.6
322,070 + -0.2
322,070 + +0.2
322,070 + -2.0
322,071 - +0.5
322,270 - -0.4
322,386 + MPMX19_04878 0.17 -1.4
322,386 + MPMX19_04878 0.17 -0.1
322,386 + MPMX19_04878 0.17 -0.5
322,386 + MPMX19_04878 0.17 -0.5
322,386 + MPMX19_04878 0.17 +1.1
322,387 - MPMX19_04878 0.17 -1.5
322,387 - MPMX19_04878 0.17 -1.7
322,387 - MPMX19_04878 0.17 +0.7
322,387 - MPMX19_04878 0.17 -0.6
322,387 - MPMX19_04878 0.17 -0.6
322,387 - MPMX19_04878 0.17 +2.1
322,387 - MPMX19_04878 0.17 -2.3
322,387 - MPMX19_04878 0.17 -0.7
322,387 - MPMX19_04878 0.17 -1.4
322,387 - MPMX19_04878 0.17 -1.8
322,387 - MPMX19_04878 0.17 +1.8
322,398 + MPMX19_04878 0.18 -0.5
322,398 + MPMX19_04878 0.18 +0.8
322,399 - MPMX19_04878 0.18 -0.7
322,399 - MPMX19_04878 0.18 -1.1
322,399 - MPMX19_04878 0.18 -0.6
322,399 - MPMX19_04878 0.18 -0.9
322,629 + MPMX19_04878 0.40 -1.5
322,629 + MPMX19_04878 0.40 +0.1
322,629 + MPMX19_04878 0.40 -1.4
322,629 + MPMX19_04878 0.40 -0.7
322,875 + MPMX19_04878 0.64 -0.8
322,875 + MPMX19_04878 0.64 -1.1
322,875 + MPMX19_04878 0.64 -0.7
322,875 + MPMX19_04878 0.64 -0.4
322,875 + MPMX19_04878 0.64 -2.4
322,875 + MPMX19_04878 0.64 -1.7
322,876 - MPMX19_04878 0.64 -1.1
322,876 - MPMX19_04878 0.64 -1.3
322,876 - MPMX19_04878 0.64 +0.7
322,876 - MPMX19_04878 0.64 -0.4
322,876 - MPMX19_04878 0.64 +1.5
322,876 - MPMX19_04878 0.64 -0.9
322,876 - MPMX19_04878 0.64 +0.7
322,876 - MPMX19_04878 0.64 -0.9
323,097 + MPMX19_04878 0.85 +0.4
323,097 + MPMX19_04878 0.85 +0.1
323,097 + MPMX19_04878 0.85 +1.5
323,097 + MPMX19_04878 0.85 -0.8
323,097 + MPMX19_04878 0.85 -0.5
323,098 - MPMX19_04878 0.85 +1.4
323,268 + +0.1
323,269 - -1.7
323,438 + -2.1
323,438 + -1.2
323,439 - +0.1
323,439 - -2.4
323,439 - +0.2
323,439 - -1.4
323,550 - -0.4
323,606 + MPMX19_04879 0.47 +2.1
323,607 - MPMX19_04879 0.48 -0.9
323,708 + -0.2
323,708 + -0.9
323,708 + -0.9
323,708 + -0.9
323,709 - +0.0
323,709 - -0.5
323,709 - -0.7
323,709 - +0.9
323,709 - +0.8
323,709 - +0.6
323,709 - +0.0
323,768 + +0.5
323,768 + -0.3
323,768 + -0.2
323,768 + +0.5
323,768 + +0.9
323,768 + +0.3
323,768 + -1.1
323,768 + -0.4
323,768 + -1.9
323,768 + -0.6
323,768 + +1.1
323,769 - -0.9
323,769 - -1.2
323,769 - +0.6
323,769 - -0.7
323,769 - -1.3
324,186 + MPMX19_04880 0.47 -1.7
324,186 + MPMX19_04880 0.47 -0.1
324,186 + MPMX19_04880 0.47 -0.1
324,186 + MPMX19_04880 0.47 -1.2
324,186 + MPMX19_04880 0.47 -0.7
324,186 + MPMX19_04880 0.47 -0.7
324,186 + MPMX19_04880 0.47 +0.9
324,186 + MPMX19_04880 0.47 -1.2
324,186 + MPMX19_04880 0.47 -0.9
324,186 + MPMX19_04880 0.47 +0.1
324,186 + MPMX19_04880 0.47 -0.8
324,187 - MPMX19_04880 0.47 -0.2
324,187 - MPMX19_04880 0.47 +0.4
324,187 - MPMX19_04880 0.47 +0.3
324,187 - MPMX19_04880 0.47 +1.1
324,187 - MPMX19_04880 0.47 -0.5
324,187 - MPMX19_04880 0.47 -1.1
324,187 - MPMX19_04880 0.47 -1.4
324,187 - MPMX19_04880 0.47 +0.9
324,187 - MPMX19_04880 0.47 +0.7
324,187 - MPMX19_04880 0.47 -0.4
324,187 - MPMX19_04880 0.47 +0.8
324,187 - MPMX19_04880 0.47 -3.1

Or see this region's nucleotide sequence