Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04870 and MPMX19_04871 are separated by 118 nucleotides MPMX19_04871 and MPMX19_04872 are separated by 461 nucleotides
MPMX19_04870: MPMX19_04870 - Transcriptional regulatory protein OmpR, at 313,532 to 314,317
_04870
MPMX19_04871: MPMX19_04871 - hypothetical protein, at 314,436 to 315,311
_04871
MPMX19_04872: MPMX19_04872 - hypothetical protein, at 315,773 to 317,494
_04872
Position (kb) 314
315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 313.584 kb on + strand at 313.584 kb on + strand at 313.584 kb on + strand at 313.585 kb on - strand at 313.683 kb on + strand, within MPMX19_04870 at 313.683 kb on + strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.822 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.259 kb on + strand at 314.259 kb on + strand at 314.259 kb on + strand at 314.260 kb on - strand at 314.260 kb on - strand at 314.260 kb on - strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.359 kb on - strand at 314.386 kb on + strand at 314.402 kb on + strand at 314.403 kb on - strand at 314.403 kb on - strand at 314.437 kb on + strand at 314.437 kb on + strand at 314.437 kb on + strand at 314.437 kb on + strand at 314.437 kb on + strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.452 kb on + strand at 314.452 kb on + strand at 314.453 kb on - strand at 314.477 kb on - strand at 314.477 kb on - strand at 314.477 kb on - strand at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.588 kb on - strand, within MPMX19_04871 at 314.588 kb on - strand, within MPMX19_04871 at 314.588 kb on - strand, within MPMX19_04871 at 314.588 kb on - strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.687 kb on - strand, within MPMX19_04871 at 314.687 kb on - strand, within MPMX19_04871 at 314.923 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 315.046 kb on + strand, within MPMX19_04871 at 315.368 kb on + strand at 315.368 kb on + strand at 315.368 kb on + strand at 315.369 kb on - strand at 315.369 kb on - strand at 315.369 kb on - strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.457 kb on + strand at 315.457 kb on + strand at 315.458 kb on - strand at 315.458 kb on - strand at 315.501 kb on + strand at 315.501 kb on + strand at 315.502 kb on - strand at 315.502 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.557 kb on - strand at 315.557 kb on - strand at 315.557 kb on - strand at 315.585 kb on + strand at 315.585 kb on + strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.667 kb on + strand at 315.685 kb on + strand at 315.686 kb on - strand at 315.806 kb on + strand at 315.806 kb on + strand at 315.807 kb on - strand at 315.807 kb on - strand at 315.807 kb on - strand at 315.808 kb on + strand at 315.808 kb on + strand at 315.808 kb on + strand at 315.808 kb on + strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.272 kb on - strand, within MPMX19_04872 at 316.272 kb on - strand, within MPMX19_04872 at 316.272 kb on - strand, within MPMX19_04872
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 313,584 + -1.9 313,584 + -0.3 313,584 + -1.1 313,585 - -0.4 313,683 + MPMX19_04870 0.19 +0.8 313,683 + MPMX19_04870 0.19 -2.2 313,684 - MPMX19_04870 0.19 -0.5 313,684 - MPMX19_04870 0.19 +0.3 313,684 - MPMX19_04870 0.19 -0.5 313,684 - MPMX19_04870 0.19 -0.2 313,776 + MPMX19_04870 0.31 -1.7 313,776 + MPMX19_04870 0.31 -1.5 313,776 + MPMX19_04870 0.31 +0.5 313,776 + MPMX19_04870 0.31 -0.1 313,776 + MPMX19_04870 0.31 -1.4 313,776 + MPMX19_04870 0.31 -1.6 313,776 + MPMX19_04870 0.31 +0.5 313,776 + MPMX19_04870 0.31 -0.9 313,776 + MPMX19_04870 0.31 -1.5 313,777 - MPMX19_04870 0.31 +0.1 313,777 - MPMX19_04870 0.31 +0.7 313,777 - MPMX19_04870 0.31 +0.4 313,777 - MPMX19_04870 0.31 -0.7 313,777 - MPMX19_04870 0.31 +0.4 313,777 - MPMX19_04870 0.31 -0.3 313,777 - MPMX19_04870 0.31 -0.6 313,777 - MPMX19_04870 0.31 +0.5 313,822 + MPMX19_04870 0.37 -0.7 314,025 + MPMX19_04870 0.63 -1.0 314,025 + MPMX19_04870 0.63 +1.1 314,025 + MPMX19_04870 0.63 -0.1 314,025 + MPMX19_04870 0.63 -1.2 314,025 + MPMX19_04870 0.63 -1.0 314,025 + MPMX19_04870 0.63 -2.2 314,025 + MPMX19_04870 0.63 +1.2 314,025 + MPMX19_04870 0.63 -1.1 314,026 - MPMX19_04870 0.63 -0.5 314,026 - MPMX19_04870 0.63 -0.4 314,026 - MPMX19_04870 0.63 +1.7 314,026 - MPMX19_04870 0.63 -0.5 314,026 - MPMX19_04870 0.63 +0.5 314,026 - MPMX19_04870 0.63 -0.2 314,026 - MPMX19_04870 0.63 -2.1 314,026 - MPMX19_04870 0.63 -0.4 314,026 - MPMX19_04870 0.63 -0.4 314,026 - MPMX19_04870 0.63 -0.5 314,026 - MPMX19_04870 0.63 -0.5 314,026 - MPMX19_04870 0.63 -0.4 314,259 + +0.1 314,259 + -1.1 314,259 + -0.4 314,260 - -0.5 314,260 - -0.2 314,260 - -1.5 314,345 + -0.7 314,345 + -0.6 314,345 + +0.1 314,345 + -0.9 314,345 + +0.3 314,346 - -0.4 314,346 - -2.2 314,346 - +0.5 314,346 - -0.6 314,346 - +1.1 314,346 - -0.5 314,353 + -0.5 314,353 + +0.1 314,353 + +0.1 314,353 + +0.3 314,353 + -0.4 314,353 + -2.5 314,353 + +0.2 314,353 + -0.7 314,353 + -1.4 314,354 - -0.2 314,354 - -0.5 314,354 - -0.4 314,354 - -0.2 314,354 - -0.7 314,355 + +0.6 314,355 + -1.3 314,355 + -0.2 314,355 + -0.5 314,355 + +0.6 314,355 + +0.1 314,355 + -1.2 314,355 + -0.1 314,355 + -1.6 314,356 - -0.6 314,356 - -0.6 314,356 - -0.9 314,356 - -0.7 314,356 - -0.9 314,356 - +0.3 314,358 + -1.3 314,358 + -0.4 314,358 + -1.3 314,358 + -0.9 314,358 + -0.7 314,359 - -1.1 314,386 + -0.7 314,402 + -1.9 314,403 - +0.6 314,403 - -1.0 314,437 + -0.9 314,437 + -0.2 314,437 + +0.4 314,437 + -0.0 314,437 + +0.1 314,438 - -0.1 314,438 - +0.2 314,438 - -1.6 314,438 - +0.5 314,438 - +0.4 314,438 - +1.5 314,438 - -2.1 314,452 + -0.2 314,452 + -1.4 314,453 - +0.7 314,477 - -1.2 314,477 - -0.9 314,477 - -1.5 314,587 + MPMX19_04871 0.17 -0.5 314,587 + MPMX19_04871 0.17 +0.1 314,587 + MPMX19_04871 0.17 +0.8 314,587 + MPMX19_04871 0.17 -0.6 314,587 + MPMX19_04871 0.17 -0.3 314,587 + MPMX19_04871 0.17 -1.1 314,587 + MPMX19_04871 0.17 +0.4 314,588 - MPMX19_04871 0.17 -0.7 314,588 - MPMX19_04871 0.17 -0.2 314,588 - MPMX19_04871 0.17 +0.8 314,588 - MPMX19_04871 0.17 -0.2 314,686 + MPMX19_04871 0.29 -1.8 314,686 + MPMX19_04871 0.29 -1.2 314,686 + MPMX19_04871 0.29 -1.2 314,686 + MPMX19_04871 0.29 +0.0 314,686 + MPMX19_04871 0.29 -0.5 314,686 + MPMX19_04871 0.29 +0.1 314,686 + MPMX19_04871 0.29 -1.7 314,687 - MPMX19_04871 0.29 -1.2 314,687 - MPMX19_04871 0.29 +0.8 314,923 + MPMX19_04871 0.56 +0.2 314,932 + MPMX19_04871 0.57 +0.4 314,932 + MPMX19_04871 0.57 -0.1 314,932 + MPMX19_04871 0.57 -0.7 314,932 + MPMX19_04871 0.57 +0.3 314,932 + MPMX19_04871 0.57 -0.1 314,932 + MPMX19_04871 0.57 -0.2 314,932 + MPMX19_04871 0.57 +1.1 314,932 + MPMX19_04871 0.57 -2.2 314,933 - MPMX19_04871 0.57 +1.1 314,933 - MPMX19_04871 0.57 +1.4 314,933 - MPMX19_04871 0.57 -0.5 314,933 - MPMX19_04871 0.57 +0.1 314,933 - MPMX19_04871 0.57 +0.2 314,933 - MPMX19_04871 0.57 +0.5 314,933 - MPMX19_04871 0.57 -0.4 314,933 - MPMX19_04871 0.57 -1.5 314,933 - MPMX19_04871 0.57 -0.2 314,933 - MPMX19_04871 0.57 +0.8 315,046 + MPMX19_04871 0.70 -0.2 315,368 + +0.3 315,368 + -1.8 315,368 + +0.5 315,369 - +0.2 315,369 - -0.2 315,369 - +1.1 315,378 + -2.4 315,378 + -0.3 315,378 + +1.2 315,378 + +1.5 315,378 + -0.2 315,378 + -0.4 315,379 - -1.6 315,379 - -1.1 315,379 - -0.6 315,379 - -1.2 315,379 - +0.1 315,379 - -1.3 315,457 + -0.9 315,457 + -1.2 315,458 - +0.5 315,458 - +0.2 315,501 + -0.9 315,501 + -0.7 315,502 - +0.0 315,502 - +0.4 315,536 - -1.2 315,536 - +0.9 315,536 - -0.7 315,536 - -0.5 315,536 - -3.0 315,536 - -0.8 315,557 - +0.2 315,557 - +1.6 315,557 - -0.1 315,585 + +0.7 315,585 + -1.2 315,592 - +0.1 315,592 - -2.0 315,592 - -0.6 315,592 - -0.4 315,667 + -0.8 315,685 + +0.3 315,686 - -1.7 315,806 + -0.9 315,806 + -0.7 315,807 - -0.0 315,807 - -0.5 315,807 - -1.5 315,808 + -0.0 315,808 + +1.1 315,808 + +0.4 315,808 + +0.1 315,809 - +0.8 315,809 - +0.1 315,809 - -0.4 315,809 - -0.7 315,809 - -0.4 315,809 - -1.5 315,809 - -0.2 315,809 - +2.1 316,271 + MPMX19_04872 0.29 +0.5 316,271 + MPMX19_04872 0.29 -0.3 316,271 + MPMX19_04872 0.29 +1.5 316,271 + MPMX19_04872 0.29 +0.5 316,271 + MPMX19_04872 0.29 -1.5 316,271 + MPMX19_04872 0.29 +0.2 316,271 + MPMX19_04872 0.29 +0.4 316,271 + MPMX19_04872 0.29 -1.8 316,271 + MPMX19_04872 0.29 -0.2 316,272 - MPMX19_04872 0.29 -1.8 316,272 - MPMX19_04872 0.29 +0.4 316,272 - MPMX19_04872 0.29 -0.9
Or see this region's nucleotide sequence