Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04868 and MPMX19_04869 are separated by 199 nucleotides MPMX19_04869 and MPMX19_04870 are separated by 132 nucleotides
MPMX19_04868: MPMX19_04868 - Protein YdeP, at 307,987 to 310,275
_04868
MPMX19_04869: MPMX19_04869 - DNA polymerase I, at 310,475 to 313,399
_04869
MPMX19_04870: MPMX19_04870 - Transcriptional regulatory protein OmpR, at 313,532 to 314,317
_04870
Position (kb) 310
311
312
313
314 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 309.514 kb on + strand, within MPMX19_04868 at 309.514 kb on + strand, within MPMX19_04868 at 309.514 kb on + strand, within MPMX19_04868 at 309.515 kb on - strand, within MPMX19_04868 at 309.515 kb on - strand, within MPMX19_04868 at 309.515 kb on - strand, within MPMX19_04868 at 309.515 kb on - strand, within MPMX19_04868 at 309.515 kb on - strand, within MPMX19_04868 at 309.515 kb on - strand, within MPMX19_04868 at 309.766 kb on + strand, within MPMX19_04868 at 309.766 kb on + strand, within MPMX19_04868 at 309.767 kb on - strand, within MPMX19_04868 at 309.767 kb on - strand, within MPMX19_04868 at 309.820 kb on + strand, within MPMX19_04868 at 309.820 kb on + strand, within MPMX19_04868 at 309.821 kb on - strand, within MPMX19_04868 at 309.821 kb on - strand, within MPMX19_04868 at 309.821 kb on - strand, within MPMX19_04868 at 309.979 kb on + strand, within MPMX19_04868 at 309.979 kb on + strand, within MPMX19_04868 at 309.979 kb on + strand, within MPMX19_04868 at 309.979 kb on + strand, within MPMX19_04868 at 309.979 kb on + strand, within MPMX19_04868 at 309.979 kb on + strand, within MPMX19_04868 at 309.979 kb on + strand, within MPMX19_04868 at 309.980 kb on - strand, within MPMX19_04868 at 309.980 kb on - strand, within MPMX19_04868 at 309.980 kb on - strand, within MPMX19_04868 at 309.980 kb on - strand, within MPMX19_04868 at 309.980 kb on - strand, within MPMX19_04868 at 309.980 kb on - strand, within MPMX19_04868 at 309.980 kb on - strand, within MPMX19_04868 at 309.980 kb on - strand, within MPMX19_04868 at 309.980 kb on - strand, within MPMX19_04868 at 309.985 kb on + strand, within MPMX19_04868 at 309.985 kb on + strand, within MPMX19_04868 at 309.985 kb on + strand, within MPMX19_04868 at 309.986 kb on - strand, within MPMX19_04868 at 310.177 kb on + strand at 310.177 kb on + strand at 310.177 kb on + strand at 310.177 kb on + strand at 310.178 kb on - strand at 310.180 kb on + strand at 310.180 kb on + strand at 310.181 kb on - strand at 310.213 kb on + strand at 310.213 kb on + strand at 310.214 kb on - strand at 310.273 kb on + strand at 310.273 kb on + strand at 310.274 kb on - strand at 310.274 kb on - strand at 310.274 kb on - strand at 310.386 kb on - strand at 310.386 kb on - strand at 310.386 kb on - strand at 310.386 kb on - strand at 310.386 kb on - strand at 310.386 kb on - strand at 310.386 kb on - strand at 310.791 kb on + strand, within MPMX19_04869 at 310.792 kb on - strand, within MPMX19_04869 at 310.792 kb on - strand, within MPMX19_04869 at 310.792 kb on - strand, within MPMX19_04869 at 310.792 kb on - strand, within MPMX19_04869 at 310.821 kb on + strand, within MPMX19_04869 at 310.822 kb on - strand, within MPMX19_04869 at 311.146 kb on - strand, within MPMX19_04869 at 311.166 kb on + strand, within MPMX19_04869 at 311.166 kb on + strand, within MPMX19_04869 at 311.343 kb on + strand, within MPMX19_04869 at 311.343 kb on + strand, within MPMX19_04869 at 311.343 kb on + strand, within MPMX19_04869 at 311.343 kb on + strand, within MPMX19_04869 at 311.343 kb on + strand, within MPMX19_04869 at 311.344 kb on - strand, within MPMX19_04869 at 311.344 kb on - strand, within MPMX19_04869 at 311.344 kb on - strand, within MPMX19_04869 at 311.344 kb on - strand, within MPMX19_04869 at 311.344 kb on - strand, within MPMX19_04869 at 311.344 kb on - strand, within MPMX19_04869 at 311.344 kb on - strand, within MPMX19_04869 at 311.344 kb on - strand, within MPMX19_04869 at 311.445 kb on + strand, within MPMX19_04869 at 311.446 kb on - strand, within MPMX19_04869 at 311.446 kb on - strand, within MPMX19_04869 at 311.860 kb on - strand, within MPMX19_04869 at 311.922 kb on + strand, within MPMX19_04869 at 311.922 kb on + strand, within MPMX19_04869 at 311.922 kb on + strand, within MPMX19_04869 at 311.923 kb on - strand, within MPMX19_04869 at 311.923 kb on - strand, within MPMX19_04869 at 311.923 kb on - strand, within MPMX19_04869 at 311.923 kb on - strand, within MPMX19_04869 at 312.309 kb on + strand, within MPMX19_04869 at 313.430 kb on + strand at 313.430 kb on + strand at 313.430 kb on + strand at 313.431 kb on - strand at 313.584 kb on + strand at 313.584 kb on + strand at 313.584 kb on + strand at 313.585 kb on - strand at 313.683 kb on + strand, within MPMX19_04870 at 313.683 kb on + strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.822 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.259 kb on + strand at 314.259 kb on + strand at 314.259 kb on + strand at 314.260 kb on - strand at 314.260 kb on - strand at 314.260 kb on - strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.359 kb on - strand at 314.386 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 309,514 + MPMX19_04868 0.67 +1.2 309,514 + MPMX19_04868 0.67 -1.2 309,514 + MPMX19_04868 0.67 -1.5 309,515 - MPMX19_04868 0.67 -0.5 309,515 - MPMX19_04868 0.67 +0.8 309,515 - MPMX19_04868 0.67 -1.0 309,515 - MPMX19_04868 0.67 +0.1 309,515 - MPMX19_04868 0.67 +0.5 309,515 - MPMX19_04868 0.67 -2.4 309,766 + MPMX19_04868 0.78 +0.5 309,766 + MPMX19_04868 0.78 -0.2 309,767 - MPMX19_04868 0.78 +0.8 309,767 - MPMX19_04868 0.78 -0.4 309,820 + MPMX19_04868 0.80 -1.2 309,820 + MPMX19_04868 0.80 +0.5 309,821 - MPMX19_04868 0.80 -1.1 309,821 - MPMX19_04868 0.80 -1.4 309,821 - MPMX19_04868 0.80 -1.2 309,979 + MPMX19_04868 0.87 +0.3 309,979 + MPMX19_04868 0.87 -1.7 309,979 + MPMX19_04868 0.87 -0.7 309,979 + MPMX19_04868 0.87 -0.5 309,979 + MPMX19_04868 0.87 -0.5 309,979 + MPMX19_04868 0.87 -2.4 309,979 + MPMX19_04868 0.87 -0.3 309,980 - MPMX19_04868 0.87 +0.5 309,980 - MPMX19_04868 0.87 -1.2 309,980 - MPMX19_04868 0.87 -1.5 309,980 - MPMX19_04868 0.87 -1.0 309,980 - MPMX19_04868 0.87 -0.0 309,980 - MPMX19_04868 0.87 +0.3 309,980 - MPMX19_04868 0.87 +0.3 309,980 - MPMX19_04868 0.87 -0.7 309,980 - MPMX19_04868 0.87 -1.6 309,985 + MPMX19_04868 0.87 -1.4 309,985 + MPMX19_04868 0.87 -0.6 309,985 + MPMX19_04868 0.87 -0.5 309,986 - MPMX19_04868 0.87 -0.5 310,177 + -2.9 310,177 + -0.1 310,177 + +0.2 310,177 + +1.9 310,178 - -0.1 310,180 + -0.3 310,180 + +0.0 310,181 - +0.4 310,213 + -0.6 310,213 + -0.1 310,214 - -0.8 310,273 + +0.1 310,273 + +0.7 310,274 - -0.7 310,274 - +0.5 310,274 - +1.0 310,386 - -0.4 310,386 - -0.8 310,386 - -1.0 310,386 - +1.4 310,386 - -1.2 310,386 - +0.2 310,386 - +0.8 310,791 + MPMX19_04869 0.11 +0.1 310,792 - MPMX19_04869 0.11 -0.9 310,792 - MPMX19_04869 0.11 -0.2 310,792 - MPMX19_04869 0.11 -1.4 310,792 - MPMX19_04869 0.11 -0.2 310,821 + MPMX19_04869 0.12 +0.1 310,822 - MPMX19_04869 0.12 -1.7 311,146 - MPMX19_04869 0.23 +1.1 311,166 + MPMX19_04869 0.24 -0.2 311,166 + MPMX19_04869 0.24 +0.7 311,343 + MPMX19_04869 0.30 +0.5 311,343 + MPMX19_04869 0.30 -0.9 311,343 + MPMX19_04869 0.30 +0.3 311,343 + MPMX19_04869 0.30 +0.1 311,343 + MPMX19_04869 0.30 -0.5 311,344 - MPMX19_04869 0.30 -0.5 311,344 - MPMX19_04869 0.30 +0.5 311,344 - MPMX19_04869 0.30 -0.8 311,344 - MPMX19_04869 0.30 -0.5 311,344 - MPMX19_04869 0.30 +0.8 311,344 - MPMX19_04869 0.30 -0.5 311,344 - MPMX19_04869 0.30 -1.1 311,344 - MPMX19_04869 0.30 -1.8 311,445 + MPMX19_04869 0.33 -1.2 311,446 - MPMX19_04869 0.33 -0.5 311,446 - MPMX19_04869 0.33 -1.1 311,860 - MPMX19_04869 0.47 -0.5 311,922 + MPMX19_04869 0.49 -0.7 311,922 + MPMX19_04869 0.49 +0.9 311,922 + MPMX19_04869 0.49 +0.5 311,923 - MPMX19_04869 0.50 +0.1 311,923 - MPMX19_04869 0.50 -1.5 311,923 - MPMX19_04869 0.50 -0.5 311,923 - MPMX19_04869 0.50 +0.1 312,309 + MPMX19_04869 0.63 +0.6 313,430 + +0.3 313,430 + -0.6 313,430 + +0.3 313,431 - -1.0 313,584 + -1.9 313,584 + -0.3 313,584 + -1.1 313,585 - -0.4 313,683 + MPMX19_04870 0.19 +0.8 313,683 + MPMX19_04870 0.19 -2.2 313,684 - MPMX19_04870 0.19 -0.5 313,684 - MPMX19_04870 0.19 +0.3 313,684 - MPMX19_04870 0.19 -0.5 313,684 - MPMX19_04870 0.19 -0.2 313,776 + MPMX19_04870 0.31 -1.7 313,776 + MPMX19_04870 0.31 -1.5 313,776 + MPMX19_04870 0.31 +0.5 313,776 + MPMX19_04870 0.31 -0.1 313,776 + MPMX19_04870 0.31 -1.4 313,776 + MPMX19_04870 0.31 -1.6 313,776 + MPMX19_04870 0.31 +0.5 313,776 + MPMX19_04870 0.31 -0.9 313,776 + MPMX19_04870 0.31 -1.5 313,777 - MPMX19_04870 0.31 +0.1 313,777 - MPMX19_04870 0.31 +0.7 313,777 - MPMX19_04870 0.31 +0.4 313,777 - MPMX19_04870 0.31 -0.7 313,777 - MPMX19_04870 0.31 +0.4 313,777 - MPMX19_04870 0.31 -0.3 313,777 - MPMX19_04870 0.31 -0.6 313,777 - MPMX19_04870 0.31 +0.5 313,822 + MPMX19_04870 0.37 -0.7 314,025 + MPMX19_04870 0.63 -1.0 314,025 + MPMX19_04870 0.63 +1.1 314,025 + MPMX19_04870 0.63 -0.1 314,025 + MPMX19_04870 0.63 -1.2 314,025 + MPMX19_04870 0.63 -1.0 314,025 + MPMX19_04870 0.63 -2.2 314,025 + MPMX19_04870 0.63 +1.2 314,025 + MPMX19_04870 0.63 -1.1 314,026 - MPMX19_04870 0.63 -0.5 314,026 - MPMX19_04870 0.63 -0.4 314,026 - MPMX19_04870 0.63 +1.7 314,026 - MPMX19_04870 0.63 -0.5 314,026 - MPMX19_04870 0.63 +0.5 314,026 - MPMX19_04870 0.63 -0.2 314,026 - MPMX19_04870 0.63 -2.1 314,026 - MPMX19_04870 0.63 -0.4 314,026 - MPMX19_04870 0.63 -0.4 314,026 - MPMX19_04870 0.63 -0.5 314,026 - MPMX19_04870 0.63 -0.5 314,026 - MPMX19_04870 0.63 -0.4 314,259 + +0.1 314,259 + -1.1 314,259 + -0.4 314,260 - -0.5 314,260 - -0.2 314,260 - -1.5 314,345 + -0.7 314,345 + -0.6 314,345 + +0.1 314,345 + -0.9 314,345 + +0.3 314,346 - -0.4 314,346 - -2.2 314,346 - +0.5 314,346 - -0.6 314,346 - +1.1 314,346 - -0.5 314,353 + -0.5 314,353 + +0.1 314,353 + +0.1 314,353 + +0.3 314,353 + -0.4 314,353 + -2.5 314,353 + +0.2 314,353 + -0.7 314,353 + -1.4 314,354 - -0.2 314,354 - -0.5 314,354 - -0.4 314,354 - -0.2 314,354 - -0.7 314,355 + +0.6 314,355 + -1.3 314,355 + -0.2 314,355 + -0.5 314,355 + +0.6 314,355 + +0.1 314,355 + -1.2 314,355 + -0.1 314,355 + -1.6 314,356 - -0.6 314,356 - -0.6 314,356 - -0.9 314,356 - -0.7 314,356 - -0.9 314,356 - +0.3 314,358 + -1.3 314,358 + -0.4 314,358 + -1.3 314,358 + -0.9 314,358 + -0.7 314,359 - -1.1 314,386 + -0.7
Or see this region's nucleotide sequence