Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04856 and MPMX19_04857 are separated by 240 nucleotides MPMX19_04857 and MPMX19_04858 are separated by 50 nucleotides
MPMX19_04856: MPMX19_04856 - Phosphoglycolate phosphatase, at 273,587 to 274,285
_04856
MPMX19_04857: MPMX19_04857 - hypothetical protein, at 274,526 to 275,020
_04857
MPMX19_04858: MPMX19_04858 - hypothetical protein, at 275,071 to 293,739
_04858
Position (kb) 274
275
276 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 273.567 kb on + strand at 273.567 kb on + strand at 273.583 kb on - strand at 273.583 kb on - strand at 273.654 kb on + strand at 273.696 kb on + strand, within MPMX19_04856 at 273.846 kb on + strand, within MPMX19_04856 at 273.846 kb on + strand, within MPMX19_04856 at 273.846 kb on + strand, within MPMX19_04856 at 273.846 kb on + strand, within MPMX19_04856 at 273.847 kb on - strand, within MPMX19_04856 at 273.847 kb on - strand, within MPMX19_04856 at 273.847 kb on - strand, within MPMX19_04856 at 274.032 kb on + strand, within MPMX19_04856 at 274.032 kb on + strand, within MPMX19_04856 at 274.033 kb on - strand, within MPMX19_04856 at 274.033 kb on - strand, within MPMX19_04856 at 274.033 kb on - strand, within MPMX19_04856 at 274.215 kb on + strand, within MPMX19_04856 at 274.215 kb on + strand, within MPMX19_04856 at 274.216 kb on - strand at 274.216 kb on - strand at 274.216 kb on - strand at 274.216 kb on - strand at 274.386 kb on + strand at 274.429 kb on + strand at 274.429 kb on + strand at 274.463 kb on + strand at 274.463 kb on + strand at 274.463 kb on + strand at 274.463 kb on + strand at 274.463 kb on + strand at 274.463 kb on + strand at 274.463 kb on + strand at 274.464 kb on - strand at 274.464 kb on - strand at 274.610 kb on + strand, within MPMX19_04857 at 274.610 kb on + strand, within MPMX19_04857 at 274.611 kb on - strand, within MPMX19_04857 at 274.665 kb on - strand, within MPMX19_04857 at 274.665 kb on - strand, within MPMX19_04857 at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.534 kb on + strand at 275.534 kb on + strand at 275.534 kb on + strand at 275.534 kb on + strand at 275.534 kb on + strand at 275.534 kb on + strand at 275.535 kb on - strand at 275.535 kb on - strand at 275.535 kb on - strand at 275.535 kb on - strand at 275.535 kb on - strand at 275.951 kb on + strand at 275.951 kb on + strand at 275.951 kb on + strand at 275.951 kb on + strand at 275.951 kb on + strand at 275.951 kb on + strand at 275.951 kb on + strand at 275.951 kb on + strand at 275.952 kb on - strand at 275.952 kb on - strand at 275.952 kb on - strand at 275.952 kb on - strand at 275.952 kb on - strand at 275.952 kb on - strand at 275.952 kb on - strand at 275.952 kb on - strand at 275.952 kb on - strand at 275.952 kb on - strand at 275.952 kb on - strand at 275.952 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 273,567 + -1.7 273,567 + -1.8 273,583 - -0.5 273,583 - -2.3 273,654 + -1.2 273,696 + MPMX19_04856 0.16 +0.5 273,846 + MPMX19_04856 0.37 -0.1 273,846 + MPMX19_04856 0.37 -1.9 273,846 + MPMX19_04856 0.37 +0.8 273,846 + MPMX19_04856 0.37 +0.3 273,847 - MPMX19_04856 0.37 -0.3 273,847 - MPMX19_04856 0.37 +0.4 273,847 - MPMX19_04856 0.37 -0.9 274,032 + MPMX19_04856 0.64 -1.0 274,032 + MPMX19_04856 0.64 -1.7 274,033 - MPMX19_04856 0.64 -1.2 274,033 - MPMX19_04856 0.64 -1.1 274,033 - MPMX19_04856 0.64 -1.2 274,215 + MPMX19_04856 0.90 -0.3 274,215 + MPMX19_04856 0.90 -1.4 274,216 - -0.9 274,216 - -0.6 274,216 - -0.5 274,216 - -0.2 274,386 + +0.3 274,429 + -0.9 274,429 + +0.3 274,463 + -0.2 274,463 + -0.7 274,463 + +0.1 274,463 + +1.1 274,463 + -0.7 274,463 + +0.1 274,463 + -1.9 274,464 - +0.1 274,464 - -0.7 274,610 + MPMX19_04857 0.17 -1.2 274,610 + MPMX19_04857 0.17 +1.1 274,611 - MPMX19_04857 0.17 +0.7 274,665 - MPMX19_04857 0.28 +3.1 274,665 - MPMX19_04857 0.28 -0.5 275,186 + +0.5 275,186 + -2.4 275,186 + -1.1 275,186 + -0.7 275,186 + -0.7 275,186 + -1.0 275,186 + -1.7 275,186 + -0.7 275,186 + -0.0 275,186 + +1.0 275,187 - -0.3 275,187 - -0.5 275,187 - +0.8 275,187 - -0.7 275,187 - -0.7 275,187 - -0.0 275,187 - -1.0 275,187 - -1.3 275,187 - -1.2 275,187 - +0.5 275,187 - +0.0 275,534 + -0.1 275,534 + -0.3 275,534 + -0.7 275,534 + -0.9 275,534 + -0.1 275,534 + -0.9 275,535 - -0.1 275,535 - +0.6 275,535 - -0.2 275,535 - -2.5 275,535 - -0.2 275,951 + +0.8 275,951 + -1.8 275,951 + -2.8 275,951 + +0.3 275,951 + -0.5 275,951 + +0.1 275,951 + +0.3 275,951 + -2.2 275,952 - +0.1 275,952 - -1.9 275,952 - +0.1 275,952 - -0.7 275,952 - +0.2 275,952 - -1.6 275,952 - -0.9 275,952 - -0.1 275,952 - -3.9 275,952 - -1.2 275,952 - -1.1 275,952 - +0.3
Or see this region's nucleotide sequence