Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04828

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04826 and MPMX19_04827 overlap by 4 nucleotidesMPMX19_04827 and MPMX19_04828 are separated by 11 nucleotidesMPMX19_04828 and MPMX19_04829 are separated by 313 nucleotidesMPMX19_04829 and MPMX19_04830 are separated by 45 nucleotides MPMX19_04826: MPMX19_04826 - hypothetical protein, at 233,555 to 234,616 _04826 MPMX19_04827: MPMX19_04827 - hypothetical protein, at 234,613 to 235,038 _04827 MPMX19_04828: MPMX19_04828 - hypothetical protein, at 235,050 to 236,141 _04828 MPMX19_04829: MPMX19_04829 - Putative HTH-type transcriptional regulator, at 236,455 to 236,925 _04829 MPMX19_04830: MPMX19_04830 - FeS cluster assembly protein SufB, at 236,971 to 238,455 _04830 Position (kb) 235 236 237Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 234.146 kb on + strand, within MPMX19_04826at 234.146 kb on + strand, within MPMX19_04826at 234.146 kb on + strand, within MPMX19_04826at 234.146 kb on + strand, within MPMX19_04826at 234.147 kb on - strand, within MPMX19_04826at 234.147 kb on - strand, within MPMX19_04826at 234.147 kb on - strand, within MPMX19_04826at 234.147 kb on - strand, within MPMX19_04826at 234.147 kb on - strand, within MPMX19_04826at 234.147 kb on - strand, within MPMX19_04826at 234.164 kb on - strand, within MPMX19_04826at 234.634 kb on + strandat 234.635 kb on - strandat 234.934 kb on + strand, within MPMX19_04827at 234.934 kb on + strand, within MPMX19_04827at 234.934 kb on + strand, within MPMX19_04827at 234.934 kb on + strand, within MPMX19_04827at 234.934 kb on + strand, within MPMX19_04827at 234.934 kb on + strand, within MPMX19_04827at 234.934 kb on + strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 235.251 kb on + strand, within MPMX19_04828at 235.251 kb on + strand, within MPMX19_04828at 235.251 kb on + strand, within MPMX19_04828at 235.251 kb on + strand, within MPMX19_04828at 235.251 kb on + strand, within MPMX19_04828at 235.251 kb on + strand, within MPMX19_04828at 235.251 kb on + strand, within MPMX19_04828at 235.251 kb on + strand, within MPMX19_04828at 235.252 kb on - strand, within MPMX19_04828at 235.252 kb on - strand, within MPMX19_04828at 235.252 kb on - strand, within MPMX19_04828at 235.252 kb on - strand, within MPMX19_04828at 235.252 kb on - strand, within MPMX19_04828at 235.312 kb on - strand, within MPMX19_04828at 235.312 kb on - strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.581 kb on + strand, within MPMX19_04828at 235.581 kb on + strand, within MPMX19_04828at 235.582 kb on - strand, within MPMX19_04828at 235.582 kb on - strand, within MPMX19_04828at 235.582 kb on - strand, within MPMX19_04828at 235.614 kb on + strand, within MPMX19_04828at 235.615 kb on - strand, within MPMX19_04828at 235.615 kb on - strand, within MPMX19_04828at 235.615 kb on - strand, within MPMX19_04828at 235.615 kb on - strand, within MPMX19_04828at 235.615 kb on - strand, within MPMX19_04828at 235.647 kb on + strand, within MPMX19_04828at 235.647 kb on + strand, within MPMX19_04828at 235.647 kb on + strand, within MPMX19_04828at 235.648 kb on - strand, within MPMX19_04828at 235.648 kb on - strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.942 kb on - strand, within MPMX19_04828at 235.965 kb on + strand, within MPMX19_04828at 235.966 kb on - strand, within MPMX19_04828at 235.966 kb on - strand, within MPMX19_04828at 236.270 kb on - strandat 236.292 kb on + strandat 236.292 kb on + strandat 236.292 kb on + strandat 236.292 kb on + strandat 236.292 kb on + strandat 236.292 kb on + strandat 236.293 kb on - strandat 236.293 kb on - strandat 236.293 kb on - strandat 236.293 kb on - strandat 236.293 kb on - strandat 236.293 kb on - strandat 236.294 kb on + strandat 236.295 kb on - strandat 236.315 kb on + strandat 236.315 kb on + strandat 236.372 kb on - strandat 236.482 kb on + strandat 236.482 kb on + strandat 236.482 kb on + strandat 236.482 kb on + strandat 236.482 kb on + strandat 236.482 kb on + strandat 236.482 kb on + strandat 236.482 kb on + strandat 236.532 kb on + strand, within MPMX19_04829at 236.532 kb on + strand, within MPMX19_04829at 236.693 kb on + strand, within MPMX19_04829

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
234,146 + MPMX19_04826 0.56 -0.2
234,146 + MPMX19_04826 0.56 -1.0
234,146 + MPMX19_04826 0.56 -1.6
234,146 + MPMX19_04826 0.56 -0.6
234,147 - MPMX19_04826 0.56 -0.2
234,147 - MPMX19_04826 0.56 -2.4
234,147 - MPMX19_04826 0.56 +0.1
234,147 - MPMX19_04826 0.56 +0.1
234,147 - MPMX19_04826 0.56 -0.2
234,147 - MPMX19_04826 0.56 -0.4
234,164 - MPMX19_04826 0.57 +0.9
234,634 + -1.2
234,635 - -0.6
234,934 + MPMX19_04827 0.75 -0.1
234,934 + MPMX19_04827 0.75 -0.8
234,934 + MPMX19_04827 0.75 +1.1
234,934 + MPMX19_04827 0.75 +0.4
234,934 + MPMX19_04827 0.75 -1.3
234,934 + MPMX19_04827 0.75 -1.1
234,934 + MPMX19_04827 0.75 +0.1
234,935 - MPMX19_04827 0.76 -0.7
234,935 - MPMX19_04827 0.76 -0.7
234,935 - MPMX19_04827 0.76 -0.1
234,935 - MPMX19_04827 0.76 -0.2
234,935 - MPMX19_04827 0.76 -0.1
234,935 - MPMX19_04827 0.76 -1.2
234,935 - MPMX19_04827 0.76 -2.2
234,935 - MPMX19_04827 0.76 -0.9
234,935 - MPMX19_04827 0.76 +1.5
234,935 - MPMX19_04827 0.76 -1.0
234,935 - MPMX19_04827 0.76 -1.3
235,251 + MPMX19_04828 0.18 -1.7
235,251 + MPMX19_04828 0.18 -0.9
235,251 + MPMX19_04828 0.18 -0.0
235,251 + MPMX19_04828 0.18 -0.7
235,251 + MPMX19_04828 0.18 +0.4
235,251 + MPMX19_04828 0.18 +0.3
235,251 + MPMX19_04828 0.18 -0.9
235,251 + MPMX19_04828 0.18 -0.9
235,252 - MPMX19_04828 0.18 -1.7
235,252 - MPMX19_04828 0.18 +0.2
235,252 - MPMX19_04828 0.18 -0.8
235,252 - MPMX19_04828 0.18 -2.0
235,252 - MPMX19_04828 0.18 -1.0
235,312 - MPMX19_04828 0.24 -0.2
235,312 - MPMX19_04828 0.24 -0.4
235,335 + MPMX19_04828 0.26 -2.2
235,335 + MPMX19_04828 0.26 -1.4
235,335 + MPMX19_04828 0.26 +1.7
235,335 + MPMX19_04828 0.26 -0.8
235,335 + MPMX19_04828 0.26 -1.2
235,335 + MPMX19_04828 0.26 -0.4
235,335 + MPMX19_04828 0.26 -1.1
235,335 + MPMX19_04828 0.26 +0.9
235,335 + MPMX19_04828 0.26 +0.4
235,335 + MPMX19_04828 0.26 -0.7
235,335 + MPMX19_04828 0.26 -1.4
235,336 - MPMX19_04828 0.26 -1.2
235,336 - MPMX19_04828 0.26 -0.1
235,336 - MPMX19_04828 0.26 -1.5
235,336 - MPMX19_04828 0.26 -1.1
235,336 - MPMX19_04828 0.26 -0.4
235,336 - MPMX19_04828 0.26 -0.8
235,336 - MPMX19_04828 0.26 -1.6
235,336 - MPMX19_04828 0.26 +0.3
235,336 - MPMX19_04828 0.26 -1.3
235,336 - MPMX19_04828 0.26 +0.5
235,336 - MPMX19_04828 0.26 +0.2
235,336 - MPMX19_04828 0.26 -0.9
235,336 - MPMX19_04828 0.26 -1.2
235,521 + MPMX19_04828 0.43 -0.8
235,521 + MPMX19_04828 0.43 -1.0
235,521 + MPMX19_04828 0.43 -0.1
235,521 + MPMX19_04828 0.43 -1.6
235,521 + MPMX19_04828 0.43 -1.8
235,521 + MPMX19_04828 0.43 -1.5
235,521 + MPMX19_04828 0.43 -0.5
235,521 + MPMX19_04828 0.43 +0.3
235,521 + MPMX19_04828 0.43 -0.9
235,521 + MPMX19_04828 0.43 +0.1
235,521 + MPMX19_04828 0.43 -0.5
235,521 + MPMX19_04828 0.43 +1.5
235,521 + MPMX19_04828 0.43 -1.8
235,521 + MPMX19_04828 0.43 -0.3
235,522 - MPMX19_04828 0.43 -2.6
235,522 - MPMX19_04828 0.43 -1.7
235,522 - MPMX19_04828 0.43 -0.1
235,522 - MPMX19_04828 0.43 -0.0
235,522 - MPMX19_04828 0.43 +0.9
235,522 - MPMX19_04828 0.43 -0.2
235,522 - MPMX19_04828 0.43 -0.1
235,522 - MPMX19_04828 0.43 +2.1
235,522 - MPMX19_04828 0.43 -3.1
235,581 + MPMX19_04828 0.49 +1.0
235,581 + MPMX19_04828 0.49 -1.5
235,582 - MPMX19_04828 0.49 -0.2
235,582 - MPMX19_04828 0.49 -0.0
235,582 - MPMX19_04828 0.49 +0.6
235,614 + MPMX19_04828 0.52 +1.6
235,615 - MPMX19_04828 0.52 -2.4
235,615 - MPMX19_04828 0.52 +2.1
235,615 - MPMX19_04828 0.52 +1.4
235,615 - MPMX19_04828 0.52 +0.5
235,615 - MPMX19_04828 0.52 +0.2
235,647 + MPMX19_04828 0.55 -1.5
235,647 + MPMX19_04828 0.55 -0.1
235,647 + MPMX19_04828 0.55 +0.6
235,648 - MPMX19_04828 0.55 +1.7
235,648 - MPMX19_04828 0.55 -0.3
235,761 + MPMX19_04828 0.65 -1.2
235,761 + MPMX19_04828 0.65 -0.5
235,761 + MPMX19_04828 0.65 -1.3
235,761 + MPMX19_04828 0.65 -0.8
235,761 + MPMX19_04828 0.65 +0.5
235,761 + MPMX19_04828 0.65 -0.1
235,761 + MPMX19_04828 0.65 -0.1
235,761 + MPMX19_04828 0.65 -0.3
235,761 + MPMX19_04828 0.65 -0.5
235,761 + MPMX19_04828 0.65 -0.6
235,761 + MPMX19_04828 0.65 -1.7
235,761 + MPMX19_04828 0.65 -1.9
235,761 + MPMX19_04828 0.65 -0.2
235,761 + MPMX19_04828 0.65 +1.0
235,761 + MPMX19_04828 0.65 -0.4
235,761 + MPMX19_04828 0.65 -2.1
235,761 + MPMX19_04828 0.65 -1.5
235,761 + MPMX19_04828 0.65 -0.0
235,761 + MPMX19_04828 0.65 +0.2
235,761 + MPMX19_04828 0.65 -0.4
235,761 + MPMX19_04828 0.65 -0.2
235,761 + MPMX19_04828 0.65 +0.4
235,762 - MPMX19_04828 0.65 -2.2
235,762 - MPMX19_04828 0.65 +0.3
235,762 - MPMX19_04828 0.65 -0.3
235,762 - MPMX19_04828 0.65 -2.1
235,762 - MPMX19_04828 0.65 -0.7
235,762 - MPMX19_04828 0.65 -1.5
235,762 - MPMX19_04828 0.65 -1.2
235,762 - MPMX19_04828 0.65 -0.2
235,762 - MPMX19_04828 0.65 -0.8
235,762 - MPMX19_04828 0.65 -0.2
235,762 - MPMX19_04828 0.65 -1.7
235,762 - MPMX19_04828 0.65 -0.1
235,762 - MPMX19_04828 0.65 -1.2
235,762 - MPMX19_04828 0.65 -1.8
235,942 - MPMX19_04828 0.82 -1.1
235,965 + MPMX19_04828 0.84 -0.2
235,966 - MPMX19_04828 0.84 +0.3
235,966 - MPMX19_04828 0.84 -0.9
236,270 - -1.1
236,292 + -1.0
236,292 + -0.9
236,292 + -0.9
236,292 + +1.1
236,292 + -1.2
236,292 + -0.9
236,293 - +0.9
236,293 - -1.2
236,293 - -1.0
236,293 - +1.1
236,293 - +0.5
236,293 - +0.1
236,294 + -0.6
236,295 - -1.4
236,315 + -0.9
236,315 + -0.9
236,372 - -1.2
236,482 + -1.1
236,482 + -0.5
236,482 + -0.6
236,482 + -1.2
236,482 + -0.1
236,482 + -1.2
236,482 + -1.6
236,482 + -1.0
236,532 + MPMX19_04829 0.16 +0.7
236,532 + MPMX19_04829 0.16 -0.9
236,693 + MPMX19_04829 0.51 -1.4

Or see this region's nucleotide sequence