Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04786

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04785 and MPMX19_04786 overlap by 23 nucleotidesMPMX19_04786 and MPMX19_04787 overlap by 4 nucleotidesMPMX19_04787 and MPMX19_04788 overlap by 4 nucleotides MPMX19_04785: MPMX19_04785 - hypothetical protein, at 182,724 to 183,944 _04785 MPMX19_04786: MPMX19_04786 - Thymidylate kinase, at 183,922 to 185,208 _04786 MPMX19_04787: MPMX19_04787 - hypothetical protein, at 185,205 to 185,969 _04787 MPMX19_04788: MPMX19_04788 - D-inositol-3-phosphate glycosyltransferase, at 185,966 to 187,231 _04788 Position (kb) 183 184 185 186Strain fitness (log2 ratio) -2 -1 0 1at 183.052 kb on + strand, within MPMX19_04785at 183.052 kb on + strand, within MPMX19_04785at 183.191 kb on + strand, within MPMX19_04785at 183.191 kb on + strand, within MPMX19_04785at 183.191 kb on + strand, within MPMX19_04785at 183.191 kb on + strand, within MPMX19_04785at 183.191 kb on + strand, within MPMX19_04785at 183.192 kb on - strand, within MPMX19_04785at 183.192 kb on - strand, within MPMX19_04785at 183.192 kb on - strand, within MPMX19_04785at 183.233 kb on + strand, within MPMX19_04785at 183.337 kb on + strand, within MPMX19_04785at 183.427 kb on + strand, within MPMX19_04785at 183.427 kb on + strand, within MPMX19_04785at 183.427 kb on + strand, within MPMX19_04785at 183.427 kb on + strand, within MPMX19_04785at 183.427 kb on + strand, within MPMX19_04785at 183.427 kb on + strand, within MPMX19_04785at 183.428 kb on - strand, within MPMX19_04785at 183.428 kb on - strand, within MPMX19_04785at 183.428 kb on - strand, within MPMX19_04785at 183.478 kb on + strand, within MPMX19_04785at 183.479 kb on - strand, within MPMX19_04785at 183.479 kb on - strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.620 kb on - strand, within MPMX19_04785at 183.620 kb on - strand, within MPMX19_04785at 183.620 kb on - strand, within MPMX19_04785at 183.620 kb on - strand, within MPMX19_04785at 183.620 kb on - strand, within MPMX19_04785at 183.757 kb on + strand, within MPMX19_04785at 183.927 kb on + strandat 183.927 kb on + strandat 183.927 kb on + strandat 183.927 kb on + strandat 183.927 kb on + strandat 183.927 kb on + strandat 183.927 kb on + strandat 183.927 kb on + strandat 183.927 kb on + strandat 183.927 kb on + strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.954 kb on + strandat 183.954 kb on + strandat 184.058 kb on + strand, within MPMX19_04786at 184.058 kb on + strand, within MPMX19_04786at 184.058 kb on + strand, within MPMX19_04786at 184.058 kb on + strand, within MPMX19_04786at 184.058 kb on + strand, within MPMX19_04786at 184.058 kb on + strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.244 kb on + strand, within MPMX19_04786at 184.244 kb on + strand, within MPMX19_04786at 184.244 kb on + strand, within MPMX19_04786at 184.244 kb on + strand, within MPMX19_04786at 184.244 kb on + strand, within MPMX19_04786at 184.244 kb on + strand, within MPMX19_04786at 184.244 kb on + strand, within MPMX19_04786at 184.244 kb on + strand, within MPMX19_04786at 184.244 kb on + strand, within MPMX19_04786at 184.245 kb on - strand, within MPMX19_04786at 184.245 kb on - strand, within MPMX19_04786at 184.245 kb on - strand, within MPMX19_04786at 184.245 kb on - strand, within MPMX19_04786at 184.245 kb on - strand, within MPMX19_04786at 184.245 kb on - strand, within MPMX19_04786at 184.245 kb on - strand, within MPMX19_04786at 184.313 kb on + strand, within MPMX19_04786at 184.411 kb on + strand, within MPMX19_04786at 184.412 kb on - strand, within MPMX19_04786at 184.765 kb on + strand, within MPMX19_04786at 185.496 kb on + strand, within MPMX19_04787at 185.892 kb on - strand, within MPMX19_04787at 185.892 kb on - strand, within MPMX19_04787at 185.892 kb on - strand, within MPMX19_04787at 185.947 kb on + strandat 185.948 kb on - strandat 185.948 kb on - strandat 186.024 kb on + strandat 186.024 kb on + strandat 186.024 kb on + strandat 186.024 kb on + strandat 186.025 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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183,052 + MPMX19_04785 0.27 +0.2
183,052 + MPMX19_04785 0.27 +0.7
183,191 + MPMX19_04785 0.38 +1.3
183,191 + MPMX19_04785 0.38 -0.0
183,191 + MPMX19_04785 0.38 -1.7
183,191 + MPMX19_04785 0.38 +0.1
183,191 + MPMX19_04785 0.38 -1.5
183,192 - MPMX19_04785 0.38 -2.0
183,192 - MPMX19_04785 0.38 -1.7
183,192 - MPMX19_04785 0.38 +0.1
183,233 + MPMX19_04785 0.42 -1.3
183,337 + MPMX19_04785 0.50 -0.5
183,427 + MPMX19_04785 0.58 -0.4
183,427 + MPMX19_04785 0.58 +1.1
183,427 + MPMX19_04785 0.58 -0.7
183,427 + MPMX19_04785 0.58 -0.5
183,427 + MPMX19_04785 0.58 -1.3
183,427 + MPMX19_04785 0.58 -0.6
183,428 - MPMX19_04785 0.58 +0.1
183,428 - MPMX19_04785 0.58 +0.5
183,428 - MPMX19_04785 0.58 -1.4
183,478 + MPMX19_04785 0.62 -0.7
183,479 - MPMX19_04785 0.62 -0.3
183,479 - MPMX19_04785 0.62 +0.4
183,619 + MPMX19_04785 0.73 -1.7
183,619 + MPMX19_04785 0.73 -1.2
183,619 + MPMX19_04785 0.73 -1.1
183,619 + MPMX19_04785 0.73 +0.3
183,619 + MPMX19_04785 0.73 -1.1
183,619 + MPMX19_04785 0.73 +0.4
183,619 + MPMX19_04785 0.73 +0.1
183,619 + MPMX19_04785 0.73 -1.4
183,620 - MPMX19_04785 0.73 -2.3
183,620 - MPMX19_04785 0.73 -0.1
183,620 - MPMX19_04785 0.73 -0.4
183,620 - MPMX19_04785 0.73 +0.3
183,620 - MPMX19_04785 0.73 -0.6
183,757 + MPMX19_04785 0.85 -1.6
183,927 + +0.1
183,927 + -0.2
183,927 + +0.7
183,927 + -0.3
183,927 + -0.6
183,927 + -0.1
183,927 + -0.9
183,927 + -0.2
183,927 + -1.4
183,927 + -0.7
183,928 - -1.8
183,928 - +1.7
183,928 - -1.3
183,928 - -0.3
183,928 - -1.2
183,928 - -1.1
183,928 - +0.1
183,928 - -1.9
183,928 - -0.9
183,928 - +0.6
183,928 - +0.6
183,928 - -0.5
183,954 + -0.0
183,954 + -1.5
184,058 + MPMX19_04786 0.11 -2.0
184,058 + MPMX19_04786 0.11 +1.5
184,058 + MPMX19_04786 0.11 -0.7
184,058 + MPMX19_04786 0.11 +1.1
184,058 + MPMX19_04786 0.11 +1.3
184,058 + MPMX19_04786 0.11 -1.4
184,059 - MPMX19_04786 0.11 -0.4
184,059 - MPMX19_04786 0.11 -1.3
184,059 - MPMX19_04786 0.11 -0.0
184,059 - MPMX19_04786 0.11 -1.5
184,059 - MPMX19_04786 0.11 +0.8
184,059 - MPMX19_04786 0.11 -1.4
184,059 - MPMX19_04786 0.11 -0.1
184,059 - MPMX19_04786 0.11 -0.7
184,059 - MPMX19_04786 0.11 -0.1
184,059 - MPMX19_04786 0.11 +0.5
184,059 - MPMX19_04786 0.11 -1.7
184,244 + MPMX19_04786 0.25 +0.2
184,244 + MPMX19_04786 0.25 -0.8
184,244 + MPMX19_04786 0.25 -2.4
184,244 + MPMX19_04786 0.25 -0.5
184,244 + MPMX19_04786 0.25 -1.1
184,244 + MPMX19_04786 0.25 +0.6
184,244 + MPMX19_04786 0.25 +0.4
184,244 + MPMX19_04786 0.25 +0.5
184,244 + MPMX19_04786 0.25 -0.7
184,245 - MPMX19_04786 0.25 +0.6
184,245 - MPMX19_04786 0.25 -1.8
184,245 - MPMX19_04786 0.25 +0.3
184,245 - MPMX19_04786 0.25 +1.2
184,245 - MPMX19_04786 0.25 +0.0
184,245 - MPMX19_04786 0.25 +1.1
184,245 - MPMX19_04786 0.25 -0.9
184,313 + MPMX19_04786 0.30 -0.3
184,411 + MPMX19_04786 0.38 +0.4
184,412 - MPMX19_04786 0.38 -0.3
184,765 + MPMX19_04786 0.66 +0.1
185,496 + MPMX19_04787 0.38 -1.3
185,892 - MPMX19_04787 0.90 -1.3
185,892 - MPMX19_04787 0.90 -0.1
185,892 - MPMX19_04787 0.90 +1.1
185,947 + -0.7
185,948 - +0.3
185,948 - -0.5
186,024 + -1.3
186,024 + -0.5
186,024 + +0.5
186,024 + +1.5
186,025 - +1.1

Or see this region's nucleotide sequence