Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04775

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04774 and MPMX19_04775 are separated by 153 nucleotidesMPMX19_04775 and MPMX19_04776 overlap by 4 nucleotides MPMX19_04774: MPMX19_04774 - hypothetical protein, at 165,967 to 167,016 _04774 MPMX19_04775: MPMX19_04775 - hypothetical protein, at 167,170 to 169,359 _04775 MPMX19_04776: MPMX19_04776 - Spermidine/putrescine import ATP-binding protein PotA, at 169,356 to 170,435 _04776 Position (kb) 167 168 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 166.285 kb on + strand, within MPMX19_04774at 166.286 kb on - strand, within MPMX19_04774at 166.333 kb on + strand, within MPMX19_04774at 166.333 kb on + strand, within MPMX19_04774at 166.333 kb on + strand, within MPMX19_04774at 166.333 kb on + strand, within MPMX19_04774at 166.333 kb on + strand, within MPMX19_04774at 166.333 kb on + strand, within MPMX19_04774at 166.333 kb on + strand, within MPMX19_04774at 166.333 kb on + strand, within MPMX19_04774at 166.334 kb on - strand, within MPMX19_04774at 166.334 kb on - strand, within MPMX19_04774at 166.334 kb on - strand, within MPMX19_04774at 166.334 kb on - strand, within MPMX19_04774at 166.334 kb on - strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.390 kb on + strand, within MPMX19_04774at 166.390 kb on + strand, within MPMX19_04774at 166.390 kb on + strand, within MPMX19_04774at 166.510 kb on + strand, within MPMX19_04774at 166.510 kb on + strand, within MPMX19_04774at 166.511 kb on - strand, within MPMX19_04774at 166.564 kb on + strand, within MPMX19_04774at 166.564 kb on + strand, within MPMX19_04774at 166.565 kb on - strand, within MPMX19_04774at 166.597 kb on + strand, within MPMX19_04774at 166.598 kb on - strand, within MPMX19_04774at 166.598 kb on - strand, within MPMX19_04774at 166.598 kb on - strand, within MPMX19_04774at 166.598 kb on - strand, within MPMX19_04774at 166.739 kb on - strand, within MPMX19_04774at 166.801 kb on + strand, within MPMX19_04774at 166.801 kb on + strand, within MPMX19_04774at 166.801 kb on + strand, within MPMX19_04774at 166.801 kb on + strand, within MPMX19_04774at 166.801 kb on + strand, within MPMX19_04774at 166.802 kb on - strand, within MPMX19_04774at 166.802 kb on - strand, within MPMX19_04774at 166.802 kb on - strand, within MPMX19_04774at 166.802 kb on - strand, within MPMX19_04774at 166.930 kb on + strandat 166.930 kb on + strandat 166.931 kb on - strandat 166.931 kb on - strandat 167.014 kb on + strandat 167.014 kb on + strandat 167.014 kb on + strandat 167.014 kb on + strandat 167.015 kb on - strandat 167.015 kb on - strandat 167.015 kb on - strandat 167.028 kb on + strandat 167.029 kb on - strandat 167.050 kb on - strandat 167.050 kb on - strandat 167.050 kb on - strandat 167.692 kb on + strand, within MPMX19_04775at 167.692 kb on + strand, within MPMX19_04775at 167.692 kb on + strand, within MPMX19_04775at 167.692 kb on + strand, within MPMX19_04775at 167.693 kb on - strand, within MPMX19_04775at 167.693 kb on - strand, within MPMX19_04775at 167.693 kb on - strand, within MPMX19_04775at 167.693 kb on - strand, within MPMX19_04775at 167.693 kb on - strand, within MPMX19_04775at 168.064 kb on + strand, within MPMX19_04775at 168.065 kb on - strand, within MPMX19_04775at 168.065 kb on - strand, within MPMX19_04775at 168.065 kb on - strand, within MPMX19_04775at 168.340 kb on + strand, within MPMX19_04775at 168.340 kb on + strand, within MPMX19_04775at 168.340 kb on + strand, within MPMX19_04775at 168.340 kb on + strand, within MPMX19_04775at 168.340 kb on + strand, within MPMX19_04775at 168.341 kb on - strand, within MPMX19_04775at 168.341 kb on - strand, within MPMX19_04775at 168.341 kb on - strand, within MPMX19_04775at 168.341 kb on - strand, within MPMX19_04775at 168.341 kb on - strand, within MPMX19_04775at 168.341 kb on - strand, within MPMX19_04775at 168.341 kb on - strand, within MPMX19_04775at 168.461 kb on - strand, within MPMX19_04775at 168.461 kb on - strand, within MPMX19_04775at 168.532 kb on + strand, within MPMX19_04775at 168.532 kb on + strand, within MPMX19_04775at 168.532 kb on + strand, within MPMX19_04775at 168.533 kb on - strand, within MPMX19_04775at 168.533 kb on - strand, within MPMX19_04775at 168.533 kb on - strand, within MPMX19_04775at 168.574 kb on + strand, within MPMX19_04775at 168.574 kb on + strand, within MPMX19_04775at 168.574 kb on + strand, within MPMX19_04775at 168.575 kb on - strand, within MPMX19_04775at 168.575 kb on - strand, within MPMX19_04775at 168.575 kb on - strand, within MPMX19_04775at 168.575 kb on - strand, within MPMX19_04775at 168.575 kb on - strand, within MPMX19_04775at 168.575 kb on - strand, within MPMX19_04775at 168.643 kb on + strand, within MPMX19_04775at 168.643 kb on + strand, within MPMX19_04775at 168.643 kb on + strand, within MPMX19_04775at 168.643 kb on + strand, within MPMX19_04775at 168.643 kb on + strand, within MPMX19_04775at 168.644 kb on - strand, within MPMX19_04775at 168.644 kb on - strand, within MPMX19_04775at 168.644 kb on - strand, within MPMX19_04775at 168.644 kb on - strand, within MPMX19_04775at 168.644 kb on - strand, within MPMX19_04775at 168.644 kb on - strand, within MPMX19_04775at 168.644 kb on - strand, within MPMX19_04775at 168.781 kb on + strand, within MPMX19_04775at 168.781 kb on + strand, within MPMX19_04775at 168.782 kb on - strand, within MPMX19_04775at 168.782 kb on - strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 168.877 kb on + strand, within MPMX19_04775at 169.111 kb on + strand, within MPMX19_04775at 169.111 kb on + strand, within MPMX19_04775at 169.111 kb on + strand, within MPMX19_04775at 169.111 kb on + strand, within MPMX19_04775at 169.111 kb on + strand, within MPMX19_04775at 169.111 kb on + strand, within MPMX19_04775at 169.112 kb on - strand, within MPMX19_04775at 169.112 kb on - strand, within MPMX19_04775at 169.171 kb on + strandat 169.171 kb on + strandat 169.171 kb on + strandat 169.172 kb on - strandat 169.189 kb on + strandat 169.189 kb on + strandat 169.189 kb on + strandat 169.189 kb on + strandat 169.189 kb on + strandat 169.189 kb on + strandat 169.190 kb on - strandat 169.190 kb on - strandat 169.238 kb on - strandat 169.238 kb on - strandat 169.238 kb on - strandat 169.238 kb on - strandat 169.356 kb on - strandat 169.623 kb on + strand, within MPMX19_04776at 169.623 kb on + strand, within MPMX19_04776at 169.623 kb on + strand, within MPMX19_04776at 169.623 kb on + strand, within MPMX19_04776at 169.623 kb on + strand, within MPMX19_04776at 169.624 kb on - strand, within MPMX19_04776at 169.624 kb on - strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 170.037 kb on + strand, within MPMX19_04776at 170.037 kb on + strand, within MPMX19_04776at 170.037 kb on + strand, within MPMX19_04776at 170.037 kb on + strand, within MPMX19_04776at 170.038 kb on - strand, within MPMX19_04776at 170.289 kb on + strand, within MPMX19_04776at 170.289 kb on + strand, within MPMX19_04776at 170.289 kb on + strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.311 kb on - strand, within MPMX19_04776at 170.311 kb on - strand, within MPMX19_04776at 170.311 kb on - strand, within MPMX19_04776at 170.311 kb on - strand, within MPMX19_04776at 170.311 kb on - strand, within MPMX19_04776at 170.311 kb on - strand, within MPMX19_04776

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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166,285 + MPMX19_04774 0.30 -0.0
166,286 - MPMX19_04774 0.30 -0.3
166,333 + MPMX19_04774 0.35 +0.3
166,333 + MPMX19_04774 0.35 +0.5
166,333 + MPMX19_04774 0.35 -0.1
166,333 + MPMX19_04774 0.35 -0.4
166,333 + MPMX19_04774 0.35 -1.5
166,333 + MPMX19_04774 0.35 -0.4
166,333 + MPMX19_04774 0.35 -1.7
166,333 + MPMX19_04774 0.35 -0.2
166,334 - MPMX19_04774 0.35 -0.5
166,334 - MPMX19_04774 0.35 +0.1
166,334 - MPMX19_04774 0.35 +0.2
166,334 - MPMX19_04774 0.35 +0.8
166,334 - MPMX19_04774 0.35 +0.5
166,366 + MPMX19_04774 0.38 -0.4
166,366 + MPMX19_04774 0.38 +0.1
166,366 + MPMX19_04774 0.38 +0.1
166,366 + MPMX19_04774 0.38 -2.5
166,366 + MPMX19_04774 0.38 -1.4
166,366 + MPMX19_04774 0.38 +1.5
166,366 + MPMX19_04774 0.38 -1.4
166,366 + MPMX19_04774 0.38 +0.7
166,366 + MPMX19_04774 0.38 -0.8
166,366 + MPMX19_04774 0.38 -2.9
166,366 + MPMX19_04774 0.38 -1.1
166,367 - MPMX19_04774 0.38 +0.5
166,367 - MPMX19_04774 0.38 +1.5
166,367 - MPMX19_04774 0.38 +2.1
166,367 - MPMX19_04774 0.38 +0.1
166,367 - MPMX19_04774 0.38 -0.2
166,367 - MPMX19_04774 0.38 -0.3
166,367 - MPMX19_04774 0.38 -1.1
166,367 - MPMX19_04774 0.38 +0.3
166,367 - MPMX19_04774 0.38 +0.5
166,367 - MPMX19_04774 0.38 -1.3
166,367 - MPMX19_04774 0.38 +1.1
166,367 - MPMX19_04774 0.38 -0.3
166,367 - MPMX19_04774 0.38 +0.5
166,390 + MPMX19_04774 0.40 -1.2
166,390 + MPMX19_04774 0.40 +1.6
166,390 + MPMX19_04774 0.40 -0.2
166,510 + MPMX19_04774 0.52 -0.8
166,510 + MPMX19_04774 0.52 -2.1
166,511 - MPMX19_04774 0.52 -2.0
166,564 + MPMX19_04774 0.57 -2.2
166,564 + MPMX19_04774 0.57 +0.5
166,565 - MPMX19_04774 0.57 +0.8
166,597 + MPMX19_04774 0.60 -0.1
166,598 - MPMX19_04774 0.60 -1.0
166,598 - MPMX19_04774 0.60 +2.1
166,598 - MPMX19_04774 0.60 -0.1
166,598 - MPMX19_04774 0.60 +1.2
166,739 - MPMX19_04774 0.74 -1.0
166,801 + MPMX19_04774 0.79 -0.8
166,801 + MPMX19_04774 0.79 +0.8
166,801 + MPMX19_04774 0.79 +0.2
166,801 + MPMX19_04774 0.79 -0.5
166,801 + MPMX19_04774 0.79 -0.6
166,802 - MPMX19_04774 0.80 -0.9
166,802 - MPMX19_04774 0.80 +1.9
166,802 - MPMX19_04774 0.80 +0.2
166,802 - MPMX19_04774 0.80 +0.6
166,930 + -0.5
166,930 + -1.5
166,931 - -0.6
166,931 - -0.9
167,014 + -0.8
167,014 + -0.1
167,014 + -0.5
167,014 + +1.1
167,015 - -0.9
167,015 - +0.8
167,015 - -0.9
167,028 + -1.1
167,029 - +0.2
167,050 - -0.5
167,050 - -1.3
167,050 - -0.9
167,692 + MPMX19_04775 0.24 -0.0
167,692 + MPMX19_04775 0.24 -0.4
167,692 + MPMX19_04775 0.24 -1.3
167,692 + MPMX19_04775 0.24 +0.2
167,693 - MPMX19_04775 0.24 +0.6
167,693 - MPMX19_04775 0.24 -0.5
167,693 - MPMX19_04775 0.24 -0.5
167,693 - MPMX19_04775 0.24 -0.5
167,693 - MPMX19_04775 0.24 -0.9
168,064 + MPMX19_04775 0.41 -0.9
168,065 - MPMX19_04775 0.41 +0.2
168,065 - MPMX19_04775 0.41 +0.5
168,065 - MPMX19_04775 0.41 +0.4
168,340 + MPMX19_04775 0.53 -0.8
168,340 + MPMX19_04775 0.53 -0.9
168,340 + MPMX19_04775 0.53 -1.1
168,340 + MPMX19_04775 0.53 -0.8
168,340 + MPMX19_04775 0.53 -1.8
168,341 - MPMX19_04775 0.53 -0.8
168,341 - MPMX19_04775 0.53 -1.1
168,341 - MPMX19_04775 0.53 +0.9
168,341 - MPMX19_04775 0.53 -0.1
168,341 - MPMX19_04775 0.53 +0.1
168,341 - MPMX19_04775 0.53 +0.2
168,341 - MPMX19_04775 0.53 -0.8
168,461 - MPMX19_04775 0.59 -0.8
168,461 - MPMX19_04775 0.59 +0.1
168,532 + MPMX19_04775 0.62 +0.1
168,532 + MPMX19_04775 0.62 -0.0
168,532 + MPMX19_04775 0.62 -0.4
168,533 - MPMX19_04775 0.62 -0.9
168,533 - MPMX19_04775 0.62 +0.4
168,533 - MPMX19_04775 0.62 +1.1
168,574 + MPMX19_04775 0.64 +0.2
168,574 + MPMX19_04775 0.64 -1.9
168,574 + MPMX19_04775 0.64 -1.3
168,575 - MPMX19_04775 0.64 -0.4
168,575 - MPMX19_04775 0.64 -0.2
168,575 - MPMX19_04775 0.64 -0.3
168,575 - MPMX19_04775 0.64 +0.5
168,575 - MPMX19_04775 0.64 -0.4
168,575 - MPMX19_04775 0.64 -1.9
168,643 + MPMX19_04775 0.67 +0.4
168,643 + MPMX19_04775 0.67 -0.8
168,643 + MPMX19_04775 0.67 -2.3
168,643 + MPMX19_04775 0.67 -2.3
168,643 + MPMX19_04775 0.67 +0.5
168,644 - MPMX19_04775 0.67 +0.2
168,644 - MPMX19_04775 0.67 -0.6
168,644 - MPMX19_04775 0.67 +0.8
168,644 - MPMX19_04775 0.67 -0.5
168,644 - MPMX19_04775 0.67 -0.8
168,644 - MPMX19_04775 0.67 -1.8
168,644 - MPMX19_04775 0.67 -0.5
168,781 + MPMX19_04775 0.74 -0.6
168,781 + MPMX19_04775 0.74 +0.7
168,782 - MPMX19_04775 0.74 -0.9
168,782 - MPMX19_04775 0.74 +1.5
168,877 + MPMX19_04775 0.78 +0.9
168,877 + MPMX19_04775 0.78 -1.2
168,877 + MPMX19_04775 0.78 +0.1
168,877 + MPMX19_04775 0.78 -0.9
168,877 + MPMX19_04775 0.78 -0.8
168,877 + MPMX19_04775 0.78 +1.4
168,877 + MPMX19_04775 0.78 -1.8
168,877 + MPMX19_04775 0.78 +0.7
168,877 + MPMX19_04775 0.78 -1.2
168,877 + MPMX19_04775 0.78 +0.2
168,877 + MPMX19_04775 0.78 -2.1
169,111 + MPMX19_04775 0.89 +0.6
169,111 + MPMX19_04775 0.89 +0.5
169,111 + MPMX19_04775 0.89 -0.4
169,111 + MPMX19_04775 0.89 +0.5
169,111 + MPMX19_04775 0.89 -2.4
169,111 + MPMX19_04775 0.89 -0.1
169,112 - MPMX19_04775 0.89 -1.4
169,112 - MPMX19_04775 0.89 +1.1
169,171 + -0.9
169,171 + +0.2
169,171 + +0.7
169,172 - -0.1
169,189 + +0.7
169,189 + +0.5
169,189 + +0.9
169,189 + -1.2
169,189 + -1.3
169,189 + -1.2
169,190 - -0.4
169,190 - -0.5
169,238 - -0.5
169,238 - +0.7
169,238 - -0.1
169,238 - -0.0
169,356 - -0.5
169,623 + MPMX19_04776 0.25 +0.1
169,623 + MPMX19_04776 0.25 -1.6
169,623 + MPMX19_04776 0.25 -0.4
169,623 + MPMX19_04776 0.25 -0.6
169,623 + MPMX19_04776 0.25 -0.8
169,624 - MPMX19_04776 0.25 -0.9
169,624 - MPMX19_04776 0.25 -0.8
169,938 + MPMX19_04776 0.54 +0.1
169,938 + MPMX19_04776 0.54 -0.5
169,938 + MPMX19_04776 0.54 -0.1
169,938 + MPMX19_04776 0.54 -0.9
169,938 + MPMX19_04776 0.54 -0.3
169,938 + MPMX19_04776 0.54 -1.5
169,938 + MPMX19_04776 0.54 -1.5
169,938 + MPMX19_04776 0.54 -0.9
169,938 + MPMX19_04776 0.54 -2.0
169,938 + MPMX19_04776 0.54 -0.6
169,938 + MPMX19_04776 0.54 +0.2
169,938 + MPMX19_04776 0.54 -0.5
169,938 + MPMX19_04776 0.54 -0.8
169,938 + MPMX19_04776 0.54 -0.4
169,939 - MPMX19_04776 0.54 -0.3
169,939 - MPMX19_04776 0.54 -0.8
169,939 - MPMX19_04776 0.54 -1.2
169,939 - MPMX19_04776 0.54 -0.9
169,939 - MPMX19_04776 0.54 +0.7
169,939 - MPMX19_04776 0.54 -0.1
169,939 - MPMX19_04776 0.54 +0.6
170,037 + MPMX19_04776 0.63 -0.5
170,037 + MPMX19_04776 0.63 -0.3
170,037 + MPMX19_04776 0.63 -0.4
170,037 + MPMX19_04776 0.63 -1.1
170,038 - MPMX19_04776 0.63 -0.8
170,289 + MPMX19_04776 0.86 -0.9
170,289 + MPMX19_04776 0.86 +0.5
170,289 + MPMX19_04776 0.86 +1.1
170,290 - MPMX19_04776 0.86 -2.2
170,290 - MPMX19_04776 0.86 -0.8
170,290 - MPMX19_04776 0.86 +1.1
170,290 - MPMX19_04776 0.86 +1.4
170,290 - MPMX19_04776 0.86 +0.5
170,290 - MPMX19_04776 0.86 -0.1
170,290 - MPMX19_04776 0.86 +0.1
170,310 + MPMX19_04776 0.88 -1.8
170,310 + MPMX19_04776 0.88 -1.1
170,310 + MPMX19_04776 0.88 -0.6
170,310 + MPMX19_04776 0.88 -0.8
170,310 + MPMX19_04776 0.88 -0.2
170,310 + MPMX19_04776 0.88 -0.1
170,310 + MPMX19_04776 0.88 -2.2
170,311 - MPMX19_04776 0.88 -0.1
170,311 - MPMX19_04776 0.88 -0.3
170,311 - MPMX19_04776 0.88 +1.1
170,311 - MPMX19_04776 0.88 -0.5
170,311 - MPMX19_04776 0.88 -1.3
170,311 - MPMX19_04776 0.88 -0.5

Or see this region's nucleotide sequence