Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04773

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04772 and MPMX19_04773 are separated by 495 nucleotidesMPMX19_04773 and MPMX19_04774 are separated by 361 nucleotides MPMX19_04772: MPMX19_04772 - L-threonate dehydrogenase, at 164,099 to 165,016 _04772 MPMX19_04773: MPMX19_04773 - tRNA-Ser, at 165,512 to 165,605 _04773 MPMX19_04774: MPMX19_04774 - hypothetical protein, at 165,967 to 167,016 _04774 Position (kb) 165 166Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 164.951 kb on + strandat 164.951 kb on + strandat 164.951 kb on + strandat 164.951 kb on + strandat 164.952 kb on - strandat 165.175 kb on + strandat 165.391 kb on + strandat 165.391 kb on + strandat 165.391 kb on + strandat 165.391 kb on + strandat 165.391 kb on + strandat 165.392 kb on - strandat 165.392 kb on - strandat 165.392 kb on - strandat 165.392 kb on - strandat 165.392 kb on - strandat 165.778 kb on + strandat 165.778 kb on + strandat 165.778 kb on + strandat 165.778 kb on + strandat 165.778 kb on + strandat 165.778 kb on + strandat 165.778 kb on + strandat 165.778 kb on + strandat 165.779 kb on - strandat 165.779 kb on - strandat 165.779 kb on - strandat 165.779 kb on - strandat 165.779 kb on - strandat 165.779 kb on - strandat 165.843 kb on - strandat 165.851 kb on + strandat 165.852 kb on - strandat 165.852 kb on - strandat 165.852 kb on - strandat 165.852 kb on - strandat 165.852 kb on - strandat 165.852 kb on - strandat 165.900 kb on - strandat 165.900 kb on - strandat 165.900 kb on - strandat 165.900 kb on - strandat 166.285 kb on + strand, within MPMX19_04774at 166.286 kb on - strand, within MPMX19_04774at 166.333 kb on + strand, within MPMX19_04774at 166.333 kb on + strand, within MPMX19_04774at 166.333 kb on + strand, within MPMX19_04774at 166.333 kb on + strand, within MPMX19_04774at 166.333 kb on + strand, within MPMX19_04774at 166.333 kb on + strand, within MPMX19_04774at 166.333 kb on + strand, within MPMX19_04774at 166.333 kb on + strand, within MPMX19_04774at 166.334 kb on - strand, within MPMX19_04774at 166.334 kb on - strand, within MPMX19_04774at 166.334 kb on - strand, within MPMX19_04774at 166.334 kb on - strand, within MPMX19_04774at 166.334 kb on - strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.366 kb on + strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.367 kb on - strand, within MPMX19_04774at 166.390 kb on + strand, within MPMX19_04774at 166.390 kb on + strand, within MPMX19_04774at 166.390 kb on + strand, within MPMX19_04774at 166.510 kb on + strand, within MPMX19_04774at 166.510 kb on + strand, within MPMX19_04774at 166.511 kb on - strand, within MPMX19_04774at 166.564 kb on + strand, within MPMX19_04774at 166.564 kb on + strand, within MPMX19_04774at 166.565 kb on - strand, within MPMX19_04774at 166.597 kb on + strand, within MPMX19_04774at 166.598 kb on - strand, within MPMX19_04774at 166.598 kb on - strand, within MPMX19_04774at 166.598 kb on - strand, within MPMX19_04774at 166.598 kb on - strand, within MPMX19_04774

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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164,951 + +0.5
164,951 + +0.5
164,951 + +0.4
164,951 + -0.1
164,952 - -0.1
165,175 + -0.9
165,391 + -0.3
165,391 + -1.3
165,391 + -0.2
165,391 + -0.3
165,391 + +0.1
165,392 - +0.1
165,392 - -0.5
165,392 - -0.7
165,392 - -1.1
165,392 - -0.5
165,778 + -0.4
165,778 + -1.4
165,778 + -0.2
165,778 + -0.8
165,778 + -0.1
165,778 + -0.1
165,778 + -0.3
165,778 + -2.2
165,779 - -1.3
165,779 - +0.7
165,779 - -0.3
165,779 - -1.9
165,779 - -0.2
165,779 - -1.8
165,843 - -0.9
165,851 + -1.8
165,852 - -1.5
165,852 - -0.3
165,852 - +1.2
165,852 - -0.7
165,852 - +1.5
165,852 - -0.3
165,900 - -1.4
165,900 - -0.3
165,900 - -1.7
165,900 - +0.5
166,285 + MPMX19_04774 0.30 -0.0
166,286 - MPMX19_04774 0.30 -0.3
166,333 + MPMX19_04774 0.35 +0.3
166,333 + MPMX19_04774 0.35 +0.5
166,333 + MPMX19_04774 0.35 -0.1
166,333 + MPMX19_04774 0.35 -0.4
166,333 + MPMX19_04774 0.35 -1.5
166,333 + MPMX19_04774 0.35 -0.4
166,333 + MPMX19_04774 0.35 -1.7
166,333 + MPMX19_04774 0.35 -0.2
166,334 - MPMX19_04774 0.35 -0.5
166,334 - MPMX19_04774 0.35 +0.1
166,334 - MPMX19_04774 0.35 +0.2
166,334 - MPMX19_04774 0.35 +0.8
166,334 - MPMX19_04774 0.35 +0.5
166,366 + MPMX19_04774 0.38 -0.4
166,366 + MPMX19_04774 0.38 +0.1
166,366 + MPMX19_04774 0.38 +0.1
166,366 + MPMX19_04774 0.38 -2.5
166,366 + MPMX19_04774 0.38 -1.4
166,366 + MPMX19_04774 0.38 +1.5
166,366 + MPMX19_04774 0.38 -1.4
166,366 + MPMX19_04774 0.38 +0.7
166,366 + MPMX19_04774 0.38 -0.8
166,366 + MPMX19_04774 0.38 -2.9
166,366 + MPMX19_04774 0.38 -1.1
166,367 - MPMX19_04774 0.38 +0.5
166,367 - MPMX19_04774 0.38 +1.5
166,367 - MPMX19_04774 0.38 +2.1
166,367 - MPMX19_04774 0.38 +0.1
166,367 - MPMX19_04774 0.38 -0.2
166,367 - MPMX19_04774 0.38 -0.3
166,367 - MPMX19_04774 0.38 -1.1
166,367 - MPMX19_04774 0.38 +0.3
166,367 - MPMX19_04774 0.38 +0.5
166,367 - MPMX19_04774 0.38 -1.3
166,367 - MPMX19_04774 0.38 +1.1
166,367 - MPMX19_04774 0.38 -0.3
166,367 - MPMX19_04774 0.38 +0.5
166,390 + MPMX19_04774 0.40 -1.2
166,390 + MPMX19_04774 0.40 +1.6
166,390 + MPMX19_04774 0.40 -0.2
166,510 + MPMX19_04774 0.52 -0.8
166,510 + MPMX19_04774 0.52 -2.1
166,511 - MPMX19_04774 0.52 -2.0
166,564 + MPMX19_04774 0.57 -2.2
166,564 + MPMX19_04774 0.57 +0.5
166,565 - MPMX19_04774 0.57 +0.8
166,597 + MPMX19_04774 0.60 -0.1
166,598 - MPMX19_04774 0.60 -1.0
166,598 - MPMX19_04774 0.60 +2.1
166,598 - MPMX19_04774 0.60 -0.1
166,598 - MPMX19_04774 0.60 +1.2

Or see this region's nucleotide sequence