Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04765

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04764 and MPMX19_04765 are separated by 222 nucleotidesMPMX19_04765 and MPMX19_04766 overlap by 4 nucleotides MPMX19_04764: MPMX19_04764 - Solute-binding protein, at 154,684 to 155,706 _04764 MPMX19_04765: MPMX19_04765 - HTH-type transcriptional repressor CytR, at 155,929 to 156,990 _04765 MPMX19_04766: MPMX19_04766 - Glycine cleavage system transcriptional activator, at 156,987 to 157,934 _04766 Position (kb) 155 156 157Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 155.015 kb on + strand, within MPMX19_04764at 155.015 kb on + strand, within MPMX19_04764at 155.015 kb on + strand, within MPMX19_04764at 155.016 kb on - strand, within MPMX19_04764at 155.016 kb on - strand, within MPMX19_04764at 155.016 kb on - strand, within MPMX19_04764at 155.016 kb on - strand, within MPMX19_04764at 155.016 kb on - strand, within MPMX19_04764at 155.037 kb on + strand, within MPMX19_04764at 155.037 kb on + strand, within MPMX19_04764at 155.038 kb on - strand, within MPMX19_04764at 155.102 kb on + strand, within MPMX19_04764at 155.103 kb on - strand, within MPMX19_04764at 155.162 kb on + strand, within MPMX19_04764at 155.162 kb on + strand, within MPMX19_04764at 155.162 kb on + strand, within MPMX19_04764at 155.162 kb on + strand, within MPMX19_04764at 155.162 kb on + strand, within MPMX19_04764at 155.163 kb on - strand, within MPMX19_04764at 155.706 kb on + strandat 155.706 kb on + strandat 155.875 kb on + strandat 155.875 kb on + strandat 155.880 kb on - strandat 155.913 kb on + strandat 155.913 kb on + strandat 155.914 kb on - strandat 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.407 kb on - strand, within MPMX19_04765at 156.407 kb on - strand, within MPMX19_04765at 156.407 kb on - strand, within MPMX19_04765at 156.407 kb on - strand, within MPMX19_04765at 156.407 kb on - strand, within MPMX19_04765at 156.418 kb on + strand, within MPMX19_04765at 156.418 kb on + strand, within MPMX19_04765at 156.418 kb on + strand, within MPMX19_04765at 156.418 kb on + strand, within MPMX19_04765at 156.418 kb on + strand, within MPMX19_04765at 156.419 kb on - strand, within MPMX19_04765at 156.419 kb on - strand, within MPMX19_04765at 156.419 kb on - strand, within MPMX19_04765at 156.419 kb on - strand, within MPMX19_04765at 156.727 kb on + strand, within MPMX19_04765at 156.727 kb on + strand, within MPMX19_04765at 156.728 kb on - strand, within MPMX19_04765at 156.728 kb on - strand, within MPMX19_04765at 156.728 kb on - strand, within MPMX19_04765at 156.728 kb on - strand, within MPMX19_04765at 156.728 kb on - strand, within MPMX19_04765at 156.728 kb on - strand, within MPMX19_04765at 156.728 kb on - strand, within MPMX19_04765at 156.893 kb on - strandat 156.893 kb on - strandat 156.988 kb on + strandat 156.988 kb on + strandat 156.988 kb on + strandat 156.989 kb on - strandat 156.989 kb on - strandat 156.989 kb on - strandat 156.989 kb on - strandat 156.989 kb on - strandat 157.024 kb on + strandat 157.025 kb on - strandat 157.299 kb on + strand, within MPMX19_04766at 157.300 kb on - strand, within MPMX19_04766at 157.364 kb on + strand, within MPMX19_04766at 157.364 kb on + strand, within MPMX19_04766at 157.365 kb on - strand, within MPMX19_04766at 157.495 kb on + strand, within MPMX19_04766at 157.495 kb on + strand, within MPMX19_04766at 157.495 kb on + strand, within MPMX19_04766at 157.495 kb on + strand, within MPMX19_04766at 157.496 kb on - strand, within MPMX19_04766at 157.496 kb on - strand, within MPMX19_04766at 157.496 kb on - strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.732 kb on + strand, within MPMX19_04766at 157.733 kb on - strand, within MPMX19_04766at 157.733 kb on - strand, within MPMX19_04766at 157.733 kb on - strand, within MPMX19_04766at 157.733 kb on - strand, within MPMX19_04766at 157.733 kb on - strand, within MPMX19_04766at 157.733 kb on - strand, within MPMX19_04766at 157.976 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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154,991 + MPMX19_04764 0.30 +1.3
154,991 + MPMX19_04764 0.30 -1.0
154,991 + MPMX19_04764 0.30 -2.6
154,991 + MPMX19_04764 0.30 +0.5
154,991 + MPMX19_04764 0.30 +0.5
154,991 + MPMX19_04764 0.30 -1.1
154,991 + MPMX19_04764 0.30 +0.3
154,991 + MPMX19_04764 0.30 -0.1
154,991 + MPMX19_04764 0.30 -1.4
154,991 + MPMX19_04764 0.30 -0.5
154,991 + MPMX19_04764 0.30 -0.5
154,991 + MPMX19_04764 0.30 -1.1
154,991 + MPMX19_04764 0.30 +1.3
154,991 + MPMX19_04764 0.30 -0.8
154,991 + MPMX19_04764 0.30 +2.0
154,992 - MPMX19_04764 0.30 +0.0
154,992 - MPMX19_04764 0.30 -1.1
154,992 - MPMX19_04764 0.30 -1.3
154,992 - MPMX19_04764 0.30 +0.2
154,992 - MPMX19_04764 0.30 -0.8
154,992 - MPMX19_04764 0.30 +0.7
154,992 - MPMX19_04764 0.30 -1.0
154,992 - MPMX19_04764 0.30 +0.8
154,992 - MPMX19_04764 0.30 -1.8
154,992 - MPMX19_04764 0.30 -0.3
155,015 + MPMX19_04764 0.32 -1.0
155,015 + MPMX19_04764 0.32 +0.3
155,015 + MPMX19_04764 0.32 +1.5
155,016 - MPMX19_04764 0.32 -2.0
155,016 - MPMX19_04764 0.32 -1.1
155,016 - MPMX19_04764 0.32 +0.0
155,016 - MPMX19_04764 0.32 -1.4
155,016 - MPMX19_04764 0.32 -0.8
155,037 + MPMX19_04764 0.35 +0.6
155,037 + MPMX19_04764 0.35 -1.0
155,038 - MPMX19_04764 0.35 -0.2
155,102 + MPMX19_04764 0.41 +1.5
155,103 - MPMX19_04764 0.41 -0.4
155,162 + MPMX19_04764 0.47 +0.1
155,162 + MPMX19_04764 0.47 -2.5
155,162 + MPMX19_04764 0.47 +0.5
155,162 + MPMX19_04764 0.47 -1.5
155,162 + MPMX19_04764 0.47 -0.5
155,163 - MPMX19_04764 0.47 -3.0
155,706 + -1.3
155,706 + -1.3
155,875 + -1.1
155,875 + -0.5
155,880 - -0.4
155,913 + +0.4
155,913 + -1.2
155,914 - -1.0
156,406 + MPMX19_04765 0.45 +0.0
156,406 + MPMX19_04765 0.45 -0.2
156,406 + MPMX19_04765 0.45 -0.3
156,406 + MPMX19_04765 0.45 +0.2
156,406 + MPMX19_04765 0.45 -1.5
156,406 + MPMX19_04765 0.45 +0.0
156,406 + MPMX19_04765 0.45 -1.1
156,406 + MPMX19_04765 0.45 -0.4
156,407 - MPMX19_04765 0.45 +0.8
156,407 - MPMX19_04765 0.45 +0.6
156,407 - MPMX19_04765 0.45 +1.0
156,407 - MPMX19_04765 0.45 -0.6
156,407 - MPMX19_04765 0.45 -1.3
156,418 + MPMX19_04765 0.46 -1.4
156,418 + MPMX19_04765 0.46 +1.4
156,418 + MPMX19_04765 0.46 +1.0
156,418 + MPMX19_04765 0.46 -0.4
156,418 + MPMX19_04765 0.46 +0.5
156,419 - MPMX19_04765 0.46 -0.2
156,419 - MPMX19_04765 0.46 +0.5
156,419 - MPMX19_04765 0.46 +0.5
156,419 - MPMX19_04765 0.46 +2.0
156,727 + MPMX19_04765 0.75 -0.4
156,727 + MPMX19_04765 0.75 +0.2
156,728 - MPMX19_04765 0.75 +0.0
156,728 - MPMX19_04765 0.75 -0.8
156,728 - MPMX19_04765 0.75 -0.7
156,728 - MPMX19_04765 0.75 -2.1
156,728 - MPMX19_04765 0.75 -0.8
156,728 - MPMX19_04765 0.75 -0.1
156,728 - MPMX19_04765 0.75 -1.8
156,893 - +0.2
156,893 - +0.2
156,988 + -1.7
156,988 + +0.2
156,988 + -1.0
156,989 - -0.5
156,989 - -1.4
156,989 - +1.0
156,989 - +0.5
156,989 - +1.5
157,024 + -0.7
157,025 - +1.4
157,299 + MPMX19_04766 0.33 +1.6
157,300 - MPMX19_04766 0.33 -1.5
157,364 + MPMX19_04766 0.40 -0.8
157,364 + MPMX19_04766 0.40 +0.5
157,365 - MPMX19_04766 0.40 -1.0
157,495 + MPMX19_04766 0.54 -2.0
157,495 + MPMX19_04766 0.54 -2.0
157,495 + MPMX19_04766 0.54 -1.3
157,495 + MPMX19_04766 0.54 -0.3
157,496 - MPMX19_04766 0.54 -0.4
157,496 - MPMX19_04766 0.54 -0.3
157,496 - MPMX19_04766 0.54 -0.5
157,732 + MPMX19_04766 0.79 -1.3
157,732 + MPMX19_04766 0.79 +0.9
157,732 + MPMX19_04766 0.79 +1.8
157,732 + MPMX19_04766 0.79 -0.4
157,732 + MPMX19_04766 0.79 -1.0
157,732 + MPMX19_04766 0.79 +0.5
157,732 + MPMX19_04766 0.79 +0.2
157,733 - MPMX19_04766 0.79 +1.0
157,733 - MPMX19_04766 0.79 +0.5
157,733 - MPMX19_04766 0.79 -0.3
157,733 - MPMX19_04766 0.79 -0.4
157,733 - MPMX19_04766 0.79 -0.7
157,733 - MPMX19_04766 0.79 -0.3
157,976 - +0.2

Or see this region's nucleotide sequence