Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04760 and MPMX19_04761 are separated by 48 nucleotides MPMX19_04761 and MPMX19_04762 are separated by 43 nucleotides
MPMX19_04760: MPMX19_04760 - Sialic acid TRAP transporter large permease protein SiaM, at 150,846 to 152,126
_04760
MPMX19_04761: MPMX19_04761 - hypothetical protein, at 152,175 to 152,720
_04761
MPMX19_04762: MPMX19_04762 - 4-hydroxy-tetrahydrodipicolinate synthase, at 152,764 to 153,702
_04762
Position (kb)
152
153 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 151.360 kb on + strand, within MPMX19_04760 at 151.360 kb on + strand, within MPMX19_04760 at 151.361 kb on - strand, within MPMX19_04760 at 151.843 kb on + strand, within MPMX19_04760 at 151.843 kb on + strand, within MPMX19_04760 at 151.843 kb on + strand, within MPMX19_04760 at 151.843 kb on + strand, within MPMX19_04760 at 151.843 kb on + strand, within MPMX19_04760 at 151.843 kb on + strand, within MPMX19_04760 at 151.843 kb on + strand, within MPMX19_04760 at 151.843 kb on + strand, within MPMX19_04760 at 151.844 kb on - strand, within MPMX19_04760 at 151.844 kb on - strand, within MPMX19_04760 at 151.844 kb on - strand, within MPMX19_04760 at 151.844 kb on - strand, within MPMX19_04760 at 152.024 kb on + strand at 152.024 kb on + strand at 152.024 kb on + strand at 152.024 kb on + strand at 152.024 kb on + strand at 152.025 kb on - strand at 152.025 kb on - strand at 152.025 kb on - strand at 152.025 kb on - strand at 152.287 kb on + strand, within MPMX19_04761 at 152.287 kb on + strand, within MPMX19_04761 at 152.287 kb on + strand, within MPMX19_04761 at 152.287 kb on + strand, within MPMX19_04761 at 152.287 kb on + strand, within MPMX19_04761 at 152.288 kb on - strand, within MPMX19_04761 at 152.288 kb on - strand, within MPMX19_04761 at 152.288 kb on - strand, within MPMX19_04761 at 152.288 kb on - strand, within MPMX19_04761 at 152.288 kb on - strand, within MPMX19_04761 at 152.288 kb on - strand, within MPMX19_04761 at 152.288 kb on - strand, within MPMX19_04761 at 152.335 kb on + strand, within MPMX19_04761 at 152.335 kb on + strand, within MPMX19_04761 at 152.335 kb on + strand, within MPMX19_04761 at 152.335 kb on + strand, within MPMX19_04761 at 152.336 kb on - strand, within MPMX19_04761 at 152.336 kb on - strand, within MPMX19_04761 at 152.336 kb on - strand, within MPMX19_04761 at 152.336 kb on - strand, within MPMX19_04761 at 152.336 kb on - strand, within MPMX19_04761 at 152.431 kb on + strand, within MPMX19_04761 at 152.431 kb on + strand, within MPMX19_04761 at 152.431 kb on + strand, within MPMX19_04761 at 152.431 kb on + strand, within MPMX19_04761 at 152.432 kb on - strand, within MPMX19_04761 at 152.432 kb on - strand, within MPMX19_04761 at 152.432 kb on - strand, within MPMX19_04761 at 152.432 kb on - strand, within MPMX19_04761 at 152.698 kb on + strand at 152.698 kb on + strand at 152.698 kb on + strand at 152.698 kb on + strand at 152.698 kb on + strand at 152.699 kb on - strand at 152.699 kb on - strand at 152.699 kb on - strand at 152.699 kb on - strand at 152.734 kb on - strand at 152.734 kb on - strand at 152.867 kb on + strand, within MPMX19_04762 at 152.867 kb on + strand, within MPMX19_04762 at 152.867 kb on + strand, within MPMX19_04762 at 152.868 kb on - strand, within MPMX19_04762 at 152.868 kb on - strand, within MPMX19_04762 at 152.918 kb on + strand, within MPMX19_04762 at 152.918 kb on + strand, within MPMX19_04762 at 152.918 kb on + strand, within MPMX19_04762 at 152.918 kb on + strand, within MPMX19_04762 at 152.918 kb on + strand, within MPMX19_04762 at 152.918 kb on + strand, within MPMX19_04762 at 152.918 kb on + strand, within MPMX19_04762 at 152.918 kb on + strand, within MPMX19_04762 at 152.918 kb on + strand, within MPMX19_04762 at 152.918 kb on + strand, within MPMX19_04762 at 152.918 kb on + strand, within MPMX19_04762 at 152.918 kb on + strand, within MPMX19_04762 at 152.918 kb on + strand, within MPMX19_04762 at 152.918 kb on + strand, within MPMX19_04762 at 152.918 kb on + strand, within MPMX19_04762 at 152.919 kb on - strand, within MPMX19_04762 at 152.919 kb on - strand, within MPMX19_04762 at 152.919 kb on - strand, within MPMX19_04762 at 152.919 kb on - strand, within MPMX19_04762 at 152.919 kb on - strand, within MPMX19_04762 at 152.919 kb on - strand, within MPMX19_04762 at 152.919 kb on - strand, within MPMX19_04762 at 152.919 kb on - strand, within MPMX19_04762 at 152.939 kb on + strand, within MPMX19_04762 at 153.035 kb on + strand, within MPMX19_04762 at 153.281 kb on + strand, within MPMX19_04762 at 153.281 kb on + strand, within MPMX19_04762 at 153.281 kb on + strand, within MPMX19_04762 at 153.281 kb on + strand, within MPMX19_04762 at 153.281 kb on + strand, within MPMX19_04762 at 153.602 kb on + strand, within MPMX19_04762 at 153.602 kb on + strand, within MPMX19_04762 at 153.602 kb on + strand, within MPMX19_04762 at 153.603 kb on - strand, within MPMX19_04762 at 153.603 kb on - strand, within MPMX19_04762 at 153.603 kb on - strand, within MPMX19_04762 at 153.603 kb on - strand, within MPMX19_04762
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 151,360 + MPMX19_04760 0.40 +1.6 151,360 + MPMX19_04760 0.40 -2.6 151,361 - MPMX19_04760 0.40 +0.0 151,843 + MPMX19_04760 0.78 +1.6 151,843 + MPMX19_04760 0.78 +0.5 151,843 + MPMX19_04760 0.78 -0.3 151,843 + MPMX19_04760 0.78 +0.0 151,843 + MPMX19_04760 0.78 -0.3 151,843 + MPMX19_04760 0.78 -0.0 151,843 + MPMX19_04760 0.78 -0.4 151,843 + MPMX19_04760 0.78 +0.2 151,844 - MPMX19_04760 0.78 +1.0 151,844 - MPMX19_04760 0.78 -2.0 151,844 - MPMX19_04760 0.78 +1.2 151,844 - MPMX19_04760 0.78 -0.4 152,024 + +0.2 152,024 + -0.3 152,024 + -1.1 152,024 + -1.5 152,024 + -1.5 152,025 - +0.5 152,025 - -1.7 152,025 - -0.4 152,025 - -1.1 152,287 + MPMX19_04761 0.21 -0.3 152,287 + MPMX19_04761 0.21 -0.4 152,287 + MPMX19_04761 0.21 +0.0 152,287 + MPMX19_04761 0.21 -0.2 152,287 + MPMX19_04761 0.21 -0.5 152,288 - MPMX19_04761 0.21 +2.0 152,288 - MPMX19_04761 0.21 -1.1 152,288 - MPMX19_04761 0.21 -1.3 152,288 - MPMX19_04761 0.21 -0.7 152,288 - MPMX19_04761 0.21 +1.4 152,288 - MPMX19_04761 0.21 +0.8 152,288 - MPMX19_04761 0.21 +0.0 152,335 + MPMX19_04761 0.29 +1.4 152,335 + MPMX19_04761 0.29 +1.0 152,335 + MPMX19_04761 0.29 +0.3 152,335 + MPMX19_04761 0.29 +0.3 152,336 - MPMX19_04761 0.29 -0.5 152,336 - MPMX19_04761 0.29 +0.5 152,336 - MPMX19_04761 0.29 -2.4 152,336 - MPMX19_04761 0.29 -0.5 152,336 - MPMX19_04761 0.29 -1.0 152,431 + MPMX19_04761 0.47 -1.2 152,431 + MPMX19_04761 0.47 -0.9 152,431 + MPMX19_04761 0.47 +0.5 152,431 + MPMX19_04761 0.47 -1.1 152,432 - MPMX19_04761 0.47 +0.3 152,432 - MPMX19_04761 0.47 +0.0 152,432 - MPMX19_04761 0.47 -1.0 152,432 - MPMX19_04761 0.47 +0.0 152,698 + +0.1 152,698 + -1.3 152,698 + -0.5 152,698 + +0.1 152,698 + -0.7 152,699 - -0.8 152,699 - +0.3 152,699 - +0.2 152,699 - -1.7 152,734 - -1.7 152,734 - -0.3 152,867 + MPMX19_04762 0.11 -1.3 152,867 + MPMX19_04762 0.11 +0.2 152,867 + MPMX19_04762 0.11 +0.2 152,868 - MPMX19_04762 0.11 -0.5 152,868 - MPMX19_04762 0.11 -0.6 152,918 + MPMX19_04762 0.16 +0.5 152,918 + MPMX19_04762 0.16 -1.4 152,918 + MPMX19_04762 0.16 -2.2 152,918 + MPMX19_04762 0.16 +0.5 152,918 + MPMX19_04762 0.16 -0.2 152,918 + MPMX19_04762 0.16 -0.8 152,918 + MPMX19_04762 0.16 +1.6 152,918 + MPMX19_04762 0.16 -2.0 152,918 + MPMX19_04762 0.16 -1.5 152,918 + MPMX19_04762 0.16 -0.4 152,918 + MPMX19_04762 0.16 -1.2 152,918 + MPMX19_04762 0.16 -1.5 152,918 + MPMX19_04762 0.16 +0.0 152,918 + MPMX19_04762 0.16 -0.4 152,918 + MPMX19_04762 0.16 +0.6 152,919 - MPMX19_04762 0.17 +0.7 152,919 - MPMX19_04762 0.17 -0.5 152,919 - MPMX19_04762 0.17 -2.0 152,919 - MPMX19_04762 0.17 +0.2 152,919 - MPMX19_04762 0.17 -1.6 152,919 - MPMX19_04762 0.17 -0.8 152,919 - MPMX19_04762 0.17 -1.4 152,919 - MPMX19_04762 0.17 +0.5 152,939 + MPMX19_04762 0.19 +0.8 153,035 + MPMX19_04762 0.29 -0.3 153,281 + MPMX19_04762 0.55 -1.0 153,281 + MPMX19_04762 0.55 +0.2 153,281 + MPMX19_04762 0.55 +0.3 153,281 + MPMX19_04762 0.55 +0.5 153,281 + MPMX19_04762 0.55 -1.1 153,602 + MPMX19_04762 0.89 -2.0 153,602 + MPMX19_04762 0.89 -0.1 153,602 + MPMX19_04762 0.89 +0.3 153,603 - MPMX19_04762 0.89 -0.4 153,603 - MPMX19_04762 0.89 -0.5 153,603 - MPMX19_04762 0.89 +0.2 153,603 - MPMX19_04762 0.89 -1.7
Or see this region's nucleotide sequence