Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04760

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04758 and MPMX19_04759 are separated by 192 nucleotidesMPMX19_04759 and MPMX19_04760 are separated by 9 nucleotidesMPMX19_04760 and MPMX19_04761 are separated by 48 nucleotidesMPMX19_04761 and MPMX19_04762 are separated by 43 nucleotides MPMX19_04758: MPMX19_04758 - Glutamine-binding periplasmic protein, at 149,124 to 149,924 _04758 MPMX19_04759: MPMX19_04759 - HTH-type transcriptional regulator LutR, at 150,117 to 150,836 _04759 MPMX19_04760: MPMX19_04760 - Sialic acid TRAP transporter large permease protein SiaM, at 150,846 to 152,126 _04760 MPMX19_04761: MPMX19_04761 - hypothetical protein, at 152,175 to 152,720 _04761 MPMX19_04762: MPMX19_04762 - 4-hydroxy-tetrahydrodipicolinate synthase, at 152,764 to 153,702 _04762 Position (kb) 150 151 152 153Strain fitness (log2 ratio) -2 -1 0 1 2at 149.930 kb on + strandat 149.930 kb on + strandat 149.930 kb on + strandat 149.931 kb on - strandat 149.931 kb on - strandat 150.056 kb on + strandat 150.057 kb on - strandat 150.057 kb on - strandat 150.057 kb on - strandat 150.057 kb on - strandat 150.057 kb on - strandat 150.378 kb on + strand, within MPMX19_04759at 150.379 kb on - strand, within MPMX19_04759at 150.379 kb on - strand, within MPMX19_04759at 150.379 kb on - strand, within MPMX19_04759at 150.379 kb on - strand, within MPMX19_04759at 150.396 kb on + strand, within MPMX19_04759at 150.397 kb on - strand, within MPMX19_04759at 150.700 kb on + strand, within MPMX19_04759at 150.700 kb on + strand, within MPMX19_04759at 150.701 kb on - strand, within MPMX19_04759at 150.834 kb on + strandat 150.834 kb on + strandat 150.834 kb on + strandat 150.835 kb on - strandat 151.060 kb on + strand, within MPMX19_04760at 151.060 kb on + strand, within MPMX19_04760at 151.060 kb on + strand, within MPMX19_04760at 151.061 kb on - strand, within MPMX19_04760at 151.061 kb on - strand, within MPMX19_04760at 151.360 kb on + strand, within MPMX19_04760at 151.360 kb on + strand, within MPMX19_04760at 151.361 kb on - strand, within MPMX19_04760at 151.843 kb on + strand, within MPMX19_04760at 151.843 kb on + strand, within MPMX19_04760at 151.843 kb on + strand, within MPMX19_04760at 151.843 kb on + strand, within MPMX19_04760at 151.843 kb on + strand, within MPMX19_04760at 151.843 kb on + strand, within MPMX19_04760at 151.843 kb on + strand, within MPMX19_04760at 151.843 kb on + strand, within MPMX19_04760at 151.844 kb on - strand, within MPMX19_04760at 151.844 kb on - strand, within MPMX19_04760at 151.844 kb on - strand, within MPMX19_04760at 151.844 kb on - strand, within MPMX19_04760at 152.024 kb on + strandat 152.024 kb on + strandat 152.024 kb on + strandat 152.024 kb on + strandat 152.024 kb on + strandat 152.025 kb on - strandat 152.025 kb on - strandat 152.025 kb on - strandat 152.025 kb on - strandat 152.287 kb on + strand, within MPMX19_04761at 152.287 kb on + strand, within MPMX19_04761at 152.287 kb on + strand, within MPMX19_04761at 152.287 kb on + strand, within MPMX19_04761at 152.287 kb on + strand, within MPMX19_04761at 152.288 kb on - strand, within MPMX19_04761at 152.288 kb on - strand, within MPMX19_04761at 152.288 kb on - strand, within MPMX19_04761at 152.288 kb on - strand, within MPMX19_04761at 152.288 kb on - strand, within MPMX19_04761at 152.288 kb on - strand, within MPMX19_04761at 152.288 kb on - strand, within MPMX19_04761at 152.335 kb on + strand, within MPMX19_04761at 152.335 kb on + strand, within MPMX19_04761at 152.335 kb on + strand, within MPMX19_04761at 152.335 kb on + strand, within MPMX19_04761at 152.336 kb on - strand, within MPMX19_04761at 152.336 kb on - strand, within MPMX19_04761at 152.336 kb on - strand, within MPMX19_04761at 152.336 kb on - strand, within MPMX19_04761at 152.336 kb on - strand, within MPMX19_04761at 152.431 kb on + strand, within MPMX19_04761at 152.431 kb on + strand, within MPMX19_04761at 152.431 kb on + strand, within MPMX19_04761at 152.431 kb on + strand, within MPMX19_04761at 152.432 kb on - strand, within MPMX19_04761at 152.432 kb on - strand, within MPMX19_04761at 152.432 kb on - strand, within MPMX19_04761at 152.432 kb on - strand, within MPMX19_04761at 152.698 kb on + strandat 152.698 kb on + strandat 152.698 kb on + strandat 152.698 kb on + strandat 152.698 kb on + strandat 152.699 kb on - strandat 152.699 kb on - strandat 152.699 kb on - strandat 152.699 kb on - strandat 152.734 kb on - strandat 152.734 kb on - strandat 152.867 kb on + strand, within MPMX19_04762at 152.867 kb on + strand, within MPMX19_04762at 152.867 kb on + strand, within MPMX19_04762at 152.868 kb on - strand, within MPMX19_04762at 152.868 kb on - strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.918 kb on + strand, within MPMX19_04762at 152.919 kb on - strand, within MPMX19_04762at 152.919 kb on - strand, within MPMX19_04762at 152.919 kb on - strand, within MPMX19_04762at 152.919 kb on - strand, within MPMX19_04762at 152.919 kb on - strand, within MPMX19_04762at 152.919 kb on - strand, within MPMX19_04762at 152.919 kb on - strand, within MPMX19_04762at 152.919 kb on - strand, within MPMX19_04762at 152.939 kb on + strand, within MPMX19_04762at 153.035 kb on + strand, within MPMX19_04762

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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149,930 + +0.2
149,930 + -1.0
149,930 + +0.2
149,931 - +0.8
149,931 - -1.4
150,056 + +0.5
150,057 - -1.0
150,057 - +0.9
150,057 - +0.2
150,057 - -2.0
150,057 - -0.8
150,378 + MPMX19_04759 0.36 -0.7
150,379 - MPMX19_04759 0.36 -0.3
150,379 - MPMX19_04759 0.36 +0.2
150,379 - MPMX19_04759 0.36 +1.3
150,379 - MPMX19_04759 0.36 +0.0
150,396 + MPMX19_04759 0.39 +0.8
150,397 - MPMX19_04759 0.39 -0.8
150,700 + MPMX19_04759 0.81 -0.4
150,700 + MPMX19_04759 0.81 -1.1
150,701 - MPMX19_04759 0.81 +0.6
150,834 + -1.8
150,834 + -1.4
150,834 + -0.5
150,835 - -1.5
151,060 + MPMX19_04760 0.17 +0.3
151,060 + MPMX19_04760 0.17 -0.1
151,060 + MPMX19_04760 0.17 -1.1
151,061 - MPMX19_04760 0.17 -0.1
151,061 - MPMX19_04760 0.17 -2.0
151,360 + MPMX19_04760 0.40 +1.6
151,360 + MPMX19_04760 0.40 -2.6
151,361 - MPMX19_04760 0.40 +0.0
151,843 + MPMX19_04760 0.78 +1.6
151,843 + MPMX19_04760 0.78 +0.5
151,843 + MPMX19_04760 0.78 -0.3
151,843 + MPMX19_04760 0.78 +0.0
151,843 + MPMX19_04760 0.78 -0.3
151,843 + MPMX19_04760 0.78 -0.0
151,843 + MPMX19_04760 0.78 -0.4
151,843 + MPMX19_04760 0.78 +0.2
151,844 - MPMX19_04760 0.78 +1.0
151,844 - MPMX19_04760 0.78 -2.0
151,844 - MPMX19_04760 0.78 +1.2
151,844 - MPMX19_04760 0.78 -0.4
152,024 + +0.2
152,024 + -0.3
152,024 + -1.1
152,024 + -1.5
152,024 + -1.5
152,025 - +0.5
152,025 - -1.7
152,025 - -0.4
152,025 - -1.1
152,287 + MPMX19_04761 0.21 -0.3
152,287 + MPMX19_04761 0.21 -0.4
152,287 + MPMX19_04761 0.21 +0.0
152,287 + MPMX19_04761 0.21 -0.2
152,287 + MPMX19_04761 0.21 -0.5
152,288 - MPMX19_04761 0.21 +2.0
152,288 - MPMX19_04761 0.21 -1.1
152,288 - MPMX19_04761 0.21 -1.3
152,288 - MPMX19_04761 0.21 -0.7
152,288 - MPMX19_04761 0.21 +1.4
152,288 - MPMX19_04761 0.21 +0.8
152,288 - MPMX19_04761 0.21 +0.0
152,335 + MPMX19_04761 0.29 +1.4
152,335 + MPMX19_04761 0.29 +1.0
152,335 + MPMX19_04761 0.29 +0.3
152,335 + MPMX19_04761 0.29 +0.3
152,336 - MPMX19_04761 0.29 -0.5
152,336 - MPMX19_04761 0.29 +0.5
152,336 - MPMX19_04761 0.29 -2.4
152,336 - MPMX19_04761 0.29 -0.5
152,336 - MPMX19_04761 0.29 -1.0
152,431 + MPMX19_04761 0.47 -1.2
152,431 + MPMX19_04761 0.47 -0.9
152,431 + MPMX19_04761 0.47 +0.5
152,431 + MPMX19_04761 0.47 -1.1
152,432 - MPMX19_04761 0.47 +0.3
152,432 - MPMX19_04761 0.47 +0.0
152,432 - MPMX19_04761 0.47 -1.0
152,432 - MPMX19_04761 0.47 +0.0
152,698 + +0.1
152,698 + -1.3
152,698 + -0.5
152,698 + +0.1
152,698 + -0.7
152,699 - -0.8
152,699 - +0.3
152,699 - +0.2
152,699 - -1.7
152,734 - -1.7
152,734 - -0.3
152,867 + MPMX19_04762 0.11 -1.3
152,867 + MPMX19_04762 0.11 +0.2
152,867 + MPMX19_04762 0.11 +0.2
152,868 - MPMX19_04762 0.11 -0.5
152,868 - MPMX19_04762 0.11 -0.6
152,918 + MPMX19_04762 0.16 +0.5
152,918 + MPMX19_04762 0.16 -1.4
152,918 + MPMX19_04762 0.16 -2.2
152,918 + MPMX19_04762 0.16 +0.5
152,918 + MPMX19_04762 0.16 -0.2
152,918 + MPMX19_04762 0.16 -0.8
152,918 + MPMX19_04762 0.16 +1.6
152,918 + MPMX19_04762 0.16 -2.0
152,918 + MPMX19_04762 0.16 -1.5
152,918 + MPMX19_04762 0.16 -0.4
152,918 + MPMX19_04762 0.16 -1.2
152,918 + MPMX19_04762 0.16 -1.5
152,918 + MPMX19_04762 0.16 +0.0
152,918 + MPMX19_04762 0.16 -0.4
152,918 + MPMX19_04762 0.16 +0.6
152,919 - MPMX19_04762 0.17 +0.7
152,919 - MPMX19_04762 0.17 -0.5
152,919 - MPMX19_04762 0.17 -2.0
152,919 - MPMX19_04762 0.17 +0.2
152,919 - MPMX19_04762 0.17 -1.6
152,919 - MPMX19_04762 0.17 -0.8
152,919 - MPMX19_04762 0.17 -1.4
152,919 - MPMX19_04762 0.17 +0.5
152,939 + MPMX19_04762 0.19 +0.8
153,035 + MPMX19_04762 0.29 -0.3

Or see this region's nucleotide sequence