Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04749

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04747 and MPMX19_04748 overlap by 4 nucleotidesMPMX19_04748 and MPMX19_04749 overlap by 25 nucleotidesMPMX19_04749 and MPMX19_04750 overlap by 4 nucleotidesMPMX19_04750 and MPMX19_04751 overlap by 4 nucleotides MPMX19_04747: MPMX19_04747 - hypothetical protein, at 138,817 to 139,518 _04747 MPMX19_04748: MPMX19_04748 - hypothetical protein, at 139,515 to 140,084 _04748 MPMX19_04749: MPMX19_04749 - hypothetical protein, at 140,060 to 141,484 _04749 MPMX19_04750: MPMX19_04750 - hypothetical protein, at 141,481 to 142,116 _04750 MPMX19_04751: MPMX19_04751 - hypothetical protein, at 142,113 to 142,814 _04751 Position (kb) 140 141 142Strain fitness (log2 ratio) -3 -2 -1 0 1at 139.581 kb on + strand, within MPMX19_04748at 139.581 kb on + strand, within MPMX19_04748at 139.581 kb on + strand, within MPMX19_04748at 139.581 kb on + strand, within MPMX19_04748at 139.581 kb on + strand, within MPMX19_04748at 139.581 kb on + strand, within MPMX19_04748at 139.581 kb on + strand, within MPMX19_04748at 139.582 kb on - strand, within MPMX19_04748at 139.582 kb on - strand, within MPMX19_04748at 139.582 kb on - strand, within MPMX19_04748at 139.582 kb on - strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.669 kb on - strand, within MPMX19_04748at 139.669 kb on - strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.753 kb on - strand, within MPMX19_04748at 139.753 kb on - strand, within MPMX19_04748at 139.753 kb on - strand, within MPMX19_04748at 139.753 kb on - strand, within MPMX19_04748at 139.753 kb on - strand, within MPMX19_04748at 139.764 kb on + strand, within MPMX19_04748at 139.764 kb on + strand, within MPMX19_04748at 139.764 kb on + strand, within MPMX19_04748at 139.764 kb on + strand, within MPMX19_04748at 139.764 kb on + strand, within MPMX19_04748at 139.765 kb on - strand, within MPMX19_04748at 139.765 kb on - strand, within MPMX19_04748at 139.765 kb on - strand, within MPMX19_04748at 140.345 kb on + strand, within MPMX19_04749at 140.346 kb on - strand, within MPMX19_04749at 140.346 kb on - strand, within MPMX19_04749at 140.346 kb on - strand, within MPMX19_04749at 140.627 kb on + strand, within MPMX19_04749at 140.628 kb on - strand, within MPMX19_04749at 140.628 kb on - strand, within MPMX19_04749at 140.628 kb on - strand, within MPMX19_04749at 140.628 kb on - strand, within MPMX19_04749at 140.628 kb on - strand, within MPMX19_04749at 140.798 kb on + strand, within MPMX19_04749at 140.825 kb on + strand, within MPMX19_04749at 140.826 kb on - strand, within MPMX19_04749at 140.847 kb on - strand, within MPMX19_04749at 141.110 kb on + strand, within MPMX19_04749at 141.203 kb on + strand, within MPMX19_04749at 141.203 kb on + strand, within MPMX19_04749at 141.203 kb on + strand, within MPMX19_04749at 141.204 kb on - strand, within MPMX19_04749at 141.204 kb on - strand, within MPMX19_04749at 141.204 kb on - strand, within MPMX19_04749at 141.204 kb on - strand, within MPMX19_04749at 141.204 kb on - strand, within MPMX19_04749at 141.204 kb on - strand, within MPMX19_04749at 141.204 kb on - strand, within MPMX19_04749at 141.239 kb on + strand, within MPMX19_04749at 141.239 kb on + strand, within MPMX19_04749at 141.239 kb on + strand, within MPMX19_04749at 141.239 kb on + strand, within MPMX19_04749at 141.240 kb on - strand, within MPMX19_04749at 141.248 kb on + strand, within MPMX19_04749at 141.248 kb on + strand, within MPMX19_04749at 141.249 kb on - strand, within MPMX19_04749at 141.249 kb on - strand, within MPMX19_04749at 141.290 kb on + strand, within MPMX19_04749at 141.290 kb on + strand, within MPMX19_04749at 141.290 kb on + strand, within MPMX19_04749at 141.290 kb on + strand, within MPMX19_04749at 141.290 kb on + strand, within MPMX19_04749at 141.290 kb on + strand, within MPMX19_04749at 141.290 kb on + strand, within MPMX19_04749at 141.290 kb on + strand, within MPMX19_04749at 141.290 kb on + strand, within MPMX19_04749at 141.290 kb on + strand, within MPMX19_04749at 141.290 kb on + strand, within MPMX19_04749at 141.290 kb on + strand, within MPMX19_04749at 141.290 kb on + strand, within MPMX19_04749at 141.290 kb on + strand, within MPMX19_04749at 141.290 kb on + strand, within MPMX19_04749at 141.291 kb on - strand, within MPMX19_04749at 141.291 kb on - strand, within MPMX19_04749at 141.291 kb on - strand, within MPMX19_04749at 141.291 kb on - strand, within MPMX19_04749at 141.291 kb on - strand, within MPMX19_04749at 141.291 kb on - strand, within MPMX19_04749at 141.291 kb on - strand, within MPMX19_04749at 141.291 kb on - strand, within MPMX19_04749at 141.291 kb on - strand, within MPMX19_04749at 141.291 kb on - strand, within MPMX19_04749at 141.291 kb on - strand, within MPMX19_04749at 141.291 kb on - strand, within MPMX19_04749at 141.291 kb on - strand, within MPMX19_04749at 141.291 kb on - strand, within MPMX19_04749at 141.291 kb on - strand, within MPMX19_04749at 141.344 kb on + strandat 141.345 kb on - strandat 141.819 kb on + strand, within MPMX19_04750at 141.819 kb on + strand, within MPMX19_04750at 141.940 kb on + strand, within MPMX19_04750at 141.940 kb on + strand, within MPMX19_04750at 141.940 kb on + strand, within MPMX19_04750at 141.940 kb on + strand, within MPMX19_04750at 141.941 kb on - strand, within MPMX19_04750at 141.941 kb on - strand, within MPMX19_04750at 141.941 kb on - strand, within MPMX19_04750at 141.941 kb on - strand, within MPMX19_04750at 141.941 kb on - strand, within MPMX19_04750at 141.941 kb on - strand, within MPMX19_04750at 141.941 kb on - strand, within MPMX19_04750at 141.941 kb on - strand, within MPMX19_04750at 141.941 kb on - strand, within MPMX19_04750at 141.941 kb on - strand, within MPMX19_04750at 141.941 kb on - strand, within MPMX19_04750at 141.941 kb on - strand, within MPMX19_04750

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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139,581 + MPMX19_04748 0.12 +0.0
139,581 + MPMX19_04748 0.12 -0.6
139,581 + MPMX19_04748 0.12 -0.7
139,581 + MPMX19_04748 0.12 -0.0
139,581 + MPMX19_04748 0.12 +0.9
139,581 + MPMX19_04748 0.12 +0.0
139,581 + MPMX19_04748 0.12 -0.1
139,582 - MPMX19_04748 0.12 -0.8
139,582 - MPMX19_04748 0.12 -0.3
139,582 - MPMX19_04748 0.12 +1.3
139,582 - MPMX19_04748 0.12 +1.0
139,668 + MPMX19_04748 0.27 -0.3
139,668 + MPMX19_04748 0.27 +1.0
139,668 + MPMX19_04748 0.27 -1.9
139,668 + MPMX19_04748 0.27 -1.5
139,668 + MPMX19_04748 0.27 +0.1
139,668 + MPMX19_04748 0.27 -2.2
139,668 + MPMX19_04748 0.27 -1.3
139,668 + MPMX19_04748 0.27 -0.5
139,669 - MPMX19_04748 0.27 -0.8
139,669 - MPMX19_04748 0.27 -0.5
139,752 + MPMX19_04748 0.42 -2.7
139,752 + MPMX19_04748 0.42 +0.0
139,752 + MPMX19_04748 0.42 -0.1
139,752 + MPMX19_04748 0.42 +1.2
139,752 + MPMX19_04748 0.42 +0.2
139,752 + MPMX19_04748 0.42 +0.6
139,752 + MPMX19_04748 0.42 -2.2
139,752 + MPMX19_04748 0.42 -0.3
139,753 - MPMX19_04748 0.42 -0.1
139,753 - MPMX19_04748 0.42 -0.1
139,753 - MPMX19_04748 0.42 +0.3
139,753 - MPMX19_04748 0.42 -0.3
139,753 - MPMX19_04748 0.42 -0.3
139,764 + MPMX19_04748 0.44 -0.4
139,764 + MPMX19_04748 0.44 +1.7
139,764 + MPMX19_04748 0.44 -2.8
139,764 + MPMX19_04748 0.44 +0.7
139,764 + MPMX19_04748 0.44 -0.8
139,765 - MPMX19_04748 0.44 -0.4
139,765 - MPMX19_04748 0.44 -1.1
139,765 - MPMX19_04748 0.44 -1.0
140,345 + MPMX19_04749 0.20 -1.3
140,346 - MPMX19_04749 0.20 +0.5
140,346 - MPMX19_04749 0.20 -1.0
140,346 - MPMX19_04749 0.20 +0.1
140,627 + MPMX19_04749 0.40 -1.0
140,628 - MPMX19_04749 0.40 -1.3
140,628 - MPMX19_04749 0.40 -0.5
140,628 - MPMX19_04749 0.40 -0.0
140,628 - MPMX19_04749 0.40 +0.3
140,628 - MPMX19_04749 0.40 -0.2
140,798 + MPMX19_04749 0.52 -0.4
140,825 + MPMX19_04749 0.54 -1.8
140,826 - MPMX19_04749 0.54 +0.3
140,847 - MPMX19_04749 0.55 -1.1
141,110 + MPMX19_04749 0.74 +0.3
141,203 + MPMX19_04749 0.80 -0.8
141,203 + MPMX19_04749 0.80 -1.0
141,203 + MPMX19_04749 0.80 -1.2
141,204 - MPMX19_04749 0.80 -1.2
141,204 - MPMX19_04749 0.80 +0.4
141,204 - MPMX19_04749 0.80 -0.4
141,204 - MPMX19_04749 0.80 -0.4
141,204 - MPMX19_04749 0.80 -0.6
141,204 - MPMX19_04749 0.80 +0.6
141,204 - MPMX19_04749 0.80 -0.3
141,239 + MPMX19_04749 0.83 +0.0
141,239 + MPMX19_04749 0.83 -2.0
141,239 + MPMX19_04749 0.83 -0.4
141,239 + MPMX19_04749 0.83 -0.0
141,240 - MPMX19_04749 0.83 -1.3
141,248 + MPMX19_04749 0.83 -0.4
141,248 + MPMX19_04749 0.83 -0.2
141,249 - MPMX19_04749 0.83 +0.0
141,249 - MPMX19_04749 0.83 -0.8
141,290 + MPMX19_04749 0.86 -0.7
141,290 + MPMX19_04749 0.86 -0.3
141,290 + MPMX19_04749 0.86 -0.6
141,290 + MPMX19_04749 0.86 -0.1
141,290 + MPMX19_04749 0.86 -1.3
141,290 + MPMX19_04749 0.86 -0.5
141,290 + MPMX19_04749 0.86 +1.0
141,290 + MPMX19_04749 0.86 -1.3
141,290 + MPMX19_04749 0.86 +0.2
141,290 + MPMX19_04749 0.86 +0.1
141,290 + MPMX19_04749 0.86 -2.1
141,290 + MPMX19_04749 0.86 -0.6
141,290 + MPMX19_04749 0.86 +0.6
141,290 + MPMX19_04749 0.86 -1.7
141,290 + MPMX19_04749 0.86 -0.1
141,291 - MPMX19_04749 0.86 -0.7
141,291 - MPMX19_04749 0.86 +0.0
141,291 - MPMX19_04749 0.86 -0.1
141,291 - MPMX19_04749 0.86 +0.5
141,291 - MPMX19_04749 0.86 -1.5
141,291 - MPMX19_04749 0.86 +0.6
141,291 - MPMX19_04749 0.86 -2.0
141,291 - MPMX19_04749 0.86 -0.1
141,291 - MPMX19_04749 0.86 -1.4
141,291 - MPMX19_04749 0.86 +1.6
141,291 - MPMX19_04749 0.86 +0.3
141,291 - MPMX19_04749 0.86 -0.3
141,291 - MPMX19_04749 0.86 -1.0
141,291 - MPMX19_04749 0.86 +0.9
141,291 - MPMX19_04749 0.86 -0.5
141,344 + -0.8
141,345 - +0.8
141,819 + MPMX19_04750 0.53 +0.8
141,819 + MPMX19_04750 0.53 +0.3
141,940 + MPMX19_04750 0.72 +0.6
141,940 + MPMX19_04750 0.72 -1.1
141,940 + MPMX19_04750 0.72 -0.3
141,940 + MPMX19_04750 0.72 -1.7
141,941 - MPMX19_04750 0.72 +0.6
141,941 - MPMX19_04750 0.72 +0.0
141,941 - MPMX19_04750 0.72 -0.1
141,941 - MPMX19_04750 0.72 +0.0
141,941 - MPMX19_04750 0.72 -0.4
141,941 - MPMX19_04750 0.72 +0.2
141,941 - MPMX19_04750 0.72 -0.3
141,941 - MPMX19_04750 0.72 +0.3
141,941 - MPMX19_04750 0.72 +0.2
141,941 - MPMX19_04750 0.72 -1.9
141,941 - MPMX19_04750 0.72 -2.3
141,941 - MPMX19_04750 0.72 -0.9

Or see this region's nucleotide sequence