Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04737

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04735 and MPMX19_04736 overlap by 4 nucleotidesMPMX19_04736 and MPMX19_04737 are separated by 13 nucleotidesMPMX19_04737 and MPMX19_04738 overlap by 26 nucleotides MPMX19_04735: MPMX19_04735 - hypothetical protein, at 125,719 to 126,795 _04735 MPMX19_04736: MPMX19_04736 - hypothetical protein, at 126,792 to 127,709 _04736 MPMX19_04737: MPMX19_04737 - Methenyltetrahydromethanopterin cyclohydrolase, at 127,723 to 128,688 _04737 MPMX19_04738: MPMX19_04738 - hypothetical protein, at 128,663 to 129,841 _04738 Position (kb) 127 128 129Strain fitness (log2 ratio) -2 -1 0 1at 126.979 kb on + strand, within MPMX19_04736at 126.979 kb on + strand, within MPMX19_04736at 126.980 kb on - strand, within MPMX19_04736at 126.980 kb on - strand, within MPMX19_04736at 127.174 kb on + strand, within MPMX19_04736at 127.174 kb on + strand, within MPMX19_04736at 127.174 kb on + strand, within MPMX19_04736at 127.174 kb on + strand, within MPMX19_04736at 127.174 kb on + strand, within MPMX19_04736at 127.174 kb on + strand, within MPMX19_04736at 127.175 kb on - strand, within MPMX19_04736at 127.175 kb on - strand, within MPMX19_04736at 127.175 kb on - strand, within MPMX19_04736at 127.175 kb on - strand, within MPMX19_04736at 127.175 kb on - strand, within MPMX19_04736at 127.189 kb on + strand, within MPMX19_04736at 127.189 kb on + strand, within MPMX19_04736at 127.189 kb on + strand, within MPMX19_04736at 127.189 kb on + strand, within MPMX19_04736at 127.189 kb on + strand, within MPMX19_04736at 127.189 kb on + strand, within MPMX19_04736at 127.189 kb on + strand, within MPMX19_04736at 127.189 kb on + strand, within MPMX19_04736at 127.189 kb on + strand, within MPMX19_04736at 127.190 kb on - strand, within MPMX19_04736at 127.190 kb on - strand, within MPMX19_04736at 127.190 kb on - strand, within MPMX19_04736at 127.190 kb on - strand, within MPMX19_04736at 127.190 kb on - strand, within MPMX19_04736at 127.190 kb on - strand, within MPMX19_04736at 127.190 kb on - strand, within MPMX19_04736at 127.190 kb on - strand, within MPMX19_04736at 127.608 kb on + strand, within MPMX19_04736at 127.608 kb on + strand, within MPMX19_04736at 127.765 kb on + strandat 127.766 kb on - strandat 127.898 kb on + strand, within MPMX19_04737at 127.899 kb on - strand, within MPMX19_04737at 127.899 kb on - strand, within MPMX19_04737at 128.396 kb on + strand, within MPMX19_04737at 128.396 kb on + strand, within MPMX19_04737at 128.396 kb on + strand, within MPMX19_04737at 128.397 kb on - strand, within MPMX19_04737at 128.397 kb on - strand, within MPMX19_04737at 128.397 kb on - strand, within MPMX19_04737at 128.397 kb on - strand, within MPMX19_04737at 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.708 kb on - strandat 128.708 kb on - strandat 128.708 kb on - strandat 128.708 kb on - strandat 128.708 kb on - strandat 128.907 kb on + strand, within MPMX19_04738at 128.908 kb on - strand, within MPMX19_04738at 129.327 kb on + strand, within MPMX19_04738at 129.327 kb on + strand, within MPMX19_04738at 129.328 kb on - strand, within MPMX19_04738at 129.328 kb on - strand, within MPMX19_04738at 129.328 kb on - strand, within MPMX19_04738at 129.328 kb on - strand, within MPMX19_04738

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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126,979 + MPMX19_04736 0.20 +1.3
126,979 + MPMX19_04736 0.20 +0.9
126,980 - MPMX19_04736 0.20 -1.4
126,980 - MPMX19_04736 0.20 -1.8
127,174 + MPMX19_04736 0.42 -1.3
127,174 + MPMX19_04736 0.42 +0.2
127,174 + MPMX19_04736 0.42 -2.7
127,174 + MPMX19_04736 0.42 +0.0
127,174 + MPMX19_04736 0.42 +0.5
127,174 + MPMX19_04736 0.42 -1.0
127,175 - MPMX19_04736 0.42 -0.8
127,175 - MPMX19_04736 0.42 -1.0
127,175 - MPMX19_04736 0.42 -1.0
127,175 - MPMX19_04736 0.42 +0.5
127,175 - MPMX19_04736 0.42 -0.7
127,189 + MPMX19_04736 0.43 -0.5
127,189 + MPMX19_04736 0.43 +0.7
127,189 + MPMX19_04736 0.43 +0.5
127,189 + MPMX19_04736 0.43 +0.0
127,189 + MPMX19_04736 0.43 -0.3
127,189 + MPMX19_04736 0.43 -0.6
127,189 + MPMX19_04736 0.43 -0.4
127,189 + MPMX19_04736 0.43 -0.1
127,189 + MPMX19_04736 0.43 -1.1
127,190 - MPMX19_04736 0.43 -0.1
127,190 - MPMX19_04736 0.43 -0.8
127,190 - MPMX19_04736 0.43 -0.3
127,190 - MPMX19_04736 0.43 -1.7
127,190 - MPMX19_04736 0.43 -0.1
127,190 - MPMX19_04736 0.43 -2.0
127,190 - MPMX19_04736 0.43 +1.2
127,190 - MPMX19_04736 0.43 -1.4
127,608 + MPMX19_04736 0.89 -0.9
127,608 + MPMX19_04736 0.89 -1.0
127,765 + +0.3
127,766 - -1.4
127,898 + MPMX19_04737 0.18 -1.2
127,899 - MPMX19_04737 0.18 +0.2
127,899 - MPMX19_04737 0.18 +0.5
128,396 + MPMX19_04737 0.70 -0.2
128,396 + MPMX19_04737 0.70 -1.8
128,396 + MPMX19_04737 0.70 -1.0
128,397 - MPMX19_04737 0.70 -1.0
128,397 - MPMX19_04737 0.70 -0.5
128,397 - MPMX19_04737 0.70 +0.4
128,397 - MPMX19_04737 0.70 -1.9
128,707 + +0.5
128,707 + -0.5
128,707 + +1.0
128,707 + -1.0
128,707 + +1.0
128,707 + -0.8
128,707 + +0.6
128,707 + +0.1
128,707 + -1.1
128,707 + -1.0
128,707 + -0.4
128,707 + -0.6
128,707 + -0.7
128,707 + -2.2
128,708 - -1.1
128,708 - +0.2
128,708 - -0.0
128,708 - -1.3
128,708 - -0.9
128,907 + MPMX19_04738 0.21 -1.0
128,908 - MPMX19_04738 0.21 -0.5
129,327 + MPMX19_04738 0.56 -0.4
129,327 + MPMX19_04738 0.56 -1.3
129,328 - MPMX19_04738 0.56 -0.1
129,328 - MPMX19_04738 0.56 +0.0
129,328 - MPMX19_04738 0.56 -1.3
129,328 - MPMX19_04738 0.56 -1.5

Or see this region's nucleotide sequence