Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04709 and MPMX19_04710 are separated by 191 nucleotides MPMX19_04710 and MPMX19_04711 are separated by 41 nucleotides MPMX19_04711 and MPMX19_04712 are separated by 19 nucleotides MPMX19_04712 and MPMX19_04713 are separated by 75 nucleotides
MPMX19_04709: MPMX19_04709 - HTH-type transcriptional regulator CdhR, at 97,031 to 98,044
_04709
MPMX19_04710: MPMX19_04710 - hypothetical protein, at 98,236 to 98,766
_04710
MPMX19_04711: MPMX19_04711 - Formyltetrahydrofolate deformylase, at 98,808 to 99,671
_04711
MPMX19_04712: MPMX19_04712 - hypothetical protein, at 99,691 to 99,867
_04712
MPMX19_04713: MPMX19_04713 - putative MFS-type transporter YcaD, at 99,943 to 101,217
_04713
Position (kb) 98
99
100 Strain fitness (log2 ratio) -2
-1
0
1
2 at 97.883 kb on + strand, within MPMX19_04709 at 98.094 kb on + strand at 98.094 kb on + strand at 98.094 kb on + strand at 98.094 kb on + strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.100 kb on + strand at 98.100 kb on + strand at 98.100 kb on + strand at 98.100 kb on + strand at 98.100 kb on + strand at 98.101 kb on - strand at 98.101 kb on - strand at 98.101 kb on - strand at 98.737 kb on + strand at 98.770 kb on + strand at 98.770 kb on + strand at 98.770 kb on + strand at 98.770 kb on + strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.792 kb on - strand at 98.832 kb on + strand at 98.832 kb on + strand at 98.832 kb on + strand at 98.832 kb on + strand at 98.832 kb on + strand at 98.832 kb on + strand at 98.832 kb on + strand at 98.833 kb on - strand at 98.833 kb on - strand at 98.833 kb on - strand at 98.833 kb on - strand at 98.833 kb on - strand at 98.833 kb on - strand at 98.882 kb on + strand at 98.882 kb on + strand at 98.882 kb on + strand at 98.882 kb on + strand at 98.882 kb on + strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.887 kb on - strand at 98.887 kb on - strand at 98.887 kb on - strand at 99.132 kb on + strand, within MPMX19_04711 at 99.229 kb on - strand, within MPMX19_04711 at 99.229 kb on - strand, within MPMX19_04711 at 99.229 kb on - strand, within MPMX19_04711 at 99.330 kb on + strand, within MPMX19_04711 at 99.331 kb on - strand, within MPMX19_04711 at 99.331 kb on - strand, within MPMX19_04711 at 99.331 kb on - strand, within MPMX19_04711 at 99.331 kb on - strand, within MPMX19_04711 at 99.331 kb on - strand, within MPMX19_04711 at 99.331 kb on - strand, within MPMX19_04711 at 99.403 kb on + strand, within MPMX19_04711 at 99.403 kb on + strand, within MPMX19_04711 at 99.430 kb on - strand, within MPMX19_04711 at 99.430 kb on - strand, within MPMX19_04711 at 99.441 kb on + strand, within MPMX19_04711 at 99.441 kb on + strand, within MPMX19_04711 at 99.441 kb on + strand, within MPMX19_04711 at 99.442 kb on - strand, within MPMX19_04711 at 99.442 kb on - strand, within MPMX19_04711 at 99.442 kb on - strand, within MPMX19_04711 at 99.442 kb on - strand, within MPMX19_04711 at 99.480 kb on + strand, within MPMX19_04711 at 99.480 kb on + strand, within MPMX19_04711 at 99.480 kb on + strand, within MPMX19_04711 at 99.480 kb on + strand, within MPMX19_04711 at 99.480 kb on + strand, within MPMX19_04711 at 99.480 kb on + strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.863 kb on + strand at 99.864 kb on - strand at 99.864 kb on - strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 100.003 kb on - strand at 100.087 kb on + strand, within MPMX19_04713 at 100.087 kb on + strand, within MPMX19_04713 at 100.087 kb on + strand, within MPMX19_04713 at 100.087 kb on + strand, within MPMX19_04713 at 100.087 kb on + strand, within MPMX19_04713 at 100.088 kb on - strand, within MPMX19_04713 at 100.090 kb on + strand, within MPMX19_04713 at 100.090 kb on + strand, within MPMX19_04713 at 100.090 kb on + strand, within MPMX19_04713 at 100.090 kb on + strand, within MPMX19_04713 at 100.090 kb on + strand, within MPMX19_04713 at 100.091 kb on - strand, within MPMX19_04713 at 100.091 kb on - strand, within MPMX19_04713 at 100.091 kb on - strand, within MPMX19_04713 at 100.091 kb on - strand, within MPMX19_04713 at 100.149 kb on + strand, within MPMX19_04713 at 100.149 kb on + strand, within MPMX19_04713 at 100.149 kb on + strand, within MPMX19_04713 at 100.149 kb on + strand, within MPMX19_04713 at 100.149 kb on + strand, within MPMX19_04713 at 100.150 kb on - strand, within MPMX19_04713 at 100.150 kb on - strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.357 kb on + strand, within MPMX19_04713 at 100.357 kb on + strand, within MPMX19_04713 at 100.357 kb on + strand, within MPMX19_04713 at 100.357 kb on + strand, within MPMX19_04713 at 100.357 kb on + strand, within MPMX19_04713 at 100.358 kb on - strand, within MPMX19_04713 at 100.381 kb on + strand, within MPMX19_04713 at 100.381 kb on + strand, within MPMX19_04713 at 100.381 kb on + strand, within MPMX19_04713 at 100.381 kb on + strand, within MPMX19_04713 at 100.381 kb on + strand, within MPMX19_04713 at 100.382 kb on - strand, within MPMX19_04713 at 100.382 kb on - strand, within MPMX19_04713 at 100.382 kb on - strand, within MPMX19_04713 at 100.528 kb on + strand, within MPMX19_04713 at 100.591 kb on + strand, within MPMX19_04713 at 100.591 kb on + strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 97,883 + MPMX19_04709 0.84 -0.4 98,094 + -0.6 98,094 + -1.4 98,094 + +1.2 98,094 + -0.7 98,095 - +0.0 98,095 - +0.8 98,095 - -0.0 98,095 - -0.8 98,095 - -1.5 98,095 - +0.2 98,095 - -1.4 98,095 - -2.7 98,100 + +0.5 98,100 + -0.1 98,100 + +0.2 98,100 + -0.8 98,100 + -2.0 98,101 - +1.8 98,101 - -1.1 98,101 - -0.5 98,737 + -1.4 98,770 + -0.5 98,770 + +0.2 98,770 + +0.2 98,770 + -0.8 98,771 - +0.5 98,771 - +0.4 98,771 - -1.3 98,771 - -1.3 98,771 - +0.2 98,771 - +0.5 98,771 - +1.5 98,771 - -0.8 98,792 - -1.2 98,832 + +1.0 98,832 + +0.7 98,832 + +2.5 98,832 + -1.1 98,832 + -0.8 98,832 + -0.1 98,832 + +1.2 98,833 - -1.8 98,833 - +0.7 98,833 - -0.5 98,833 - -0.5 98,833 - +0.0 98,833 - +0.2 98,882 + +1.2 98,882 + -0.5 98,882 + -0.7 98,882 + +1.3 98,882 + -0.3 98,883 - +0.5 98,883 - -1.1 98,883 - -0.0 98,883 - +0.3 98,883 - -0.5 98,883 - +0.7 98,883 - -0.8 98,883 - -0.9 98,886 + -1.3 98,886 + -1.0 98,886 + -0.8 98,886 + -1.7 98,886 + -0.3 98,886 + +0.0 98,886 + +1.5 98,886 + +0.2 98,887 - -0.5 98,887 - -0.3 98,887 - +0.0 99,132 + MPMX19_04711 0.38 +1.0 99,229 - MPMX19_04711 0.49 +1.6 99,229 - MPMX19_04711 0.49 +1.0 99,229 - MPMX19_04711 0.49 -1.1 99,330 + MPMX19_04711 0.60 +0.6 99,331 - MPMX19_04711 0.61 +1.5 99,331 - MPMX19_04711 0.61 -1.3 99,331 - MPMX19_04711 0.61 -2.0 99,331 - MPMX19_04711 0.61 +0.6 99,331 - MPMX19_04711 0.61 -0.3 99,331 - MPMX19_04711 0.61 +0.7 99,403 + MPMX19_04711 0.69 -0.1 99,403 + MPMX19_04711 0.69 +1.2 99,430 - MPMX19_04711 0.72 +1.0 99,430 - MPMX19_04711 0.72 +0.2 99,441 + MPMX19_04711 0.73 +0.0 99,441 + MPMX19_04711 0.73 -0.7 99,441 + MPMX19_04711 0.73 +0.7 99,442 - MPMX19_04711 0.73 -1.5 99,442 - MPMX19_04711 0.73 -1.0 99,442 - MPMX19_04711 0.73 -1.0 99,442 - MPMX19_04711 0.73 +0.2 99,480 + MPMX19_04711 0.78 +1.7 99,480 + MPMX19_04711 0.78 -1.0 99,480 + MPMX19_04711 0.78 -0.3 99,480 + MPMX19_04711 0.78 -0.8 99,480 + MPMX19_04711 0.78 -0.1 99,480 + MPMX19_04711 0.78 -0.8 99,481 - MPMX19_04711 0.78 +0.2 99,481 - MPMX19_04711 0.78 +0.5 99,481 - MPMX19_04711 0.78 -1.3 99,481 - MPMX19_04711 0.78 +0.0 99,481 - MPMX19_04711 0.78 +0.8 99,481 - MPMX19_04711 0.78 -0.8 99,481 - MPMX19_04711 0.78 -1.9 99,481 - MPMX19_04711 0.78 -1.3 99,481 - MPMX19_04711 0.78 -1.0 99,481 - MPMX19_04711 0.78 +0.2 99,481 - MPMX19_04711 0.78 +0.0 99,863 + -0.0 99,864 - -0.4 99,864 - -0.3 99,865 + +1.0 99,865 + +0.1 99,865 + -1.7 99,865 + -0.5 99,865 + +0.5 99,865 + -1.3 99,865 + -2.0 99,865 + -1.0 99,865 + -1.1 99,865 + +0.6 99,865 + +0.5 99,866 - -1.1 99,866 - -1.5 99,866 - -1.3 99,866 - -0.3 99,866 - -0.3 99,866 - -0.8 99,866 - -1.3 99,866 - -0.9 99,866 - -0.8 99,866 - +0.0 99,866 - -0.7 99,866 - -1.2 99,866 - +0.8 100,003 - -1.0 100,087 + MPMX19_04713 0.11 +0.0 100,087 + MPMX19_04713 0.11 -1.3 100,087 + MPMX19_04713 0.11 +0.0 100,087 + MPMX19_04713 0.11 -1.5 100,087 + MPMX19_04713 0.11 +0.0 100,088 - MPMX19_04713 0.11 -1.3 100,090 + MPMX19_04713 0.12 -0.9 100,090 + MPMX19_04713 0.12 -1.1 100,090 + MPMX19_04713 0.12 -0.4 100,090 + MPMX19_04713 0.12 -0.9 100,090 + MPMX19_04713 0.12 -0.8 100,091 - MPMX19_04713 0.12 -1.1 100,091 - MPMX19_04713 0.12 -0.4 100,091 - MPMX19_04713 0.12 +0.8 100,091 - MPMX19_04713 0.12 -0.8 100,149 + MPMX19_04713 0.16 -0.8 100,149 + MPMX19_04713 0.16 -1.4 100,149 + MPMX19_04713 0.16 -0.4 100,149 + MPMX19_04713 0.16 -2.4 100,149 + MPMX19_04713 0.16 -2.5 100,150 - MPMX19_04713 0.16 -0.3 100,150 - MPMX19_04713 0.16 +0.8 100,342 + MPMX19_04713 0.31 +0.7 100,342 + MPMX19_04713 0.31 -0.7 100,342 + MPMX19_04713 0.31 -0.7 100,342 + MPMX19_04713 0.31 -1.1 100,342 + MPMX19_04713 0.31 -0.4 100,342 + MPMX19_04713 0.31 +0.1 100,342 + MPMX19_04713 0.31 +1.0 100,342 + MPMX19_04713 0.31 -0.1 100,342 + MPMX19_04713 0.31 -0.8 100,343 - MPMX19_04713 0.31 -0.4 100,343 - MPMX19_04713 0.31 +0.7 100,343 - MPMX19_04713 0.31 +0.1 100,343 - MPMX19_04713 0.31 -0.3 100,343 - MPMX19_04713 0.31 -0.8 100,343 - MPMX19_04713 0.31 -0.5 100,343 - MPMX19_04713 0.31 +0.6 100,343 - MPMX19_04713 0.31 -2.3 100,343 - MPMX19_04713 0.31 -0.3 100,343 - MPMX19_04713 0.31 -1.1 100,357 + MPMX19_04713 0.32 -1.0 100,357 + MPMX19_04713 0.32 -1.4 100,357 + MPMX19_04713 0.32 -0.5 100,357 + MPMX19_04713 0.32 -1.5 100,357 + MPMX19_04713 0.32 -0.9 100,358 - MPMX19_04713 0.33 -0.7 100,381 + MPMX19_04713 0.34 -0.3 100,381 + MPMX19_04713 0.34 -1.3 100,381 + MPMX19_04713 0.34 +0.8 100,381 + MPMX19_04713 0.34 +0.0 100,381 + MPMX19_04713 0.34 +0.2 100,382 - MPMX19_04713 0.34 -1.4 100,382 - MPMX19_04713 0.34 -1.1 100,382 - MPMX19_04713 0.34 -0.5 100,528 + MPMX19_04713 0.46 +0.5 100,591 + MPMX19_04713 0.51 -0.6 100,591 + MPMX19_04713 0.51 -1.1 100,592 - MPMX19_04713 0.51 -1.5 100,592 - MPMX19_04713 0.51 +0.9 100,592 - MPMX19_04713 0.51 -1.4 100,592 - MPMX19_04713 0.51 -1.5 100,592 - MPMX19_04713 0.51 +0.6 100,592 - MPMX19_04713 0.51 -1.2 100,592 - MPMX19_04713 0.51 -0.4 100,592 - MPMX19_04713 0.51 +0.5 100,592 - MPMX19_04713 0.51 -1.1 100,592 - MPMX19_04713 0.51 +1.3 100,592 - MPMX19_04713 0.51 -0.6 100,592 - MPMX19_04713 0.51 -0.3 100,592 - MPMX19_04713 0.51 +0.6 100,609 + MPMX19_04713 0.52 -0.1 100,609 + MPMX19_04713 0.52 -2.1 100,609 + MPMX19_04713 0.52 -0.8 100,609 + MPMX19_04713 0.52 +0.6 100,609 + MPMX19_04713 0.52 -0.7 100,609 + MPMX19_04713 0.52 +0.2 100,609 + MPMX19_04713 0.52 +1.0 100,609 + MPMX19_04713 0.52 +0.8 100,609 + MPMX19_04713 0.52 +0.2 100,609 + MPMX19_04713 0.52 -0.8 100,610 - MPMX19_04713 0.52 -0.9 100,610 - MPMX19_04713 0.52 -0.6 100,610 - MPMX19_04713 0.52 -0.5 100,610 - MPMX19_04713 0.52 -0.5 100,610 - MPMX19_04713 0.52 +0.5 100,610 - MPMX19_04713 0.52 -1.0 100,610 - MPMX19_04713 0.52 -1.0 100,610 - MPMX19_04713 0.52 -1.4 100,610 - MPMX19_04713 0.52 -2.2 100,610 - MPMX19_04713 0.52 -0.4
Or see this region's nucleotide sequence