Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04707

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04706 and MPMX19_04707 overlap by 4 nucleotidesMPMX19_04707 and MPMX19_04708 are separated by 10 nucleotides MPMX19_04706: MPMX19_04706 - Sarcosine oxidase subunit alpha, at 92,300 to 95,299 _04706 MPMX19_04707: MPMX19_04707 - hypothetical protein, at 95,296 to 95,652 _04707 MPMX19_04708: MPMX19_04708 - Sarcosine oxidase subunit beta, at 95,663 to 96,916 _04708 Position (kb) 95 96Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 94.345 kb on - strand, within MPMX19_04706at 94.356 kb on + strand, within MPMX19_04706at 94.356 kb on + strand, within MPMX19_04706at 94.356 kb on + strand, within MPMX19_04706at 94.356 kb on + strand, within MPMX19_04706at 94.357 kb on - strand, within MPMX19_04706at 94.357 kb on - strand, within MPMX19_04706at 94.357 kb on - strand, within MPMX19_04706at 94.357 kb on - strand, within MPMX19_04706at 94.551 kb on + strand, within MPMX19_04706at 94.551 kb on + strand, within MPMX19_04706at 94.551 kb on + strand, within MPMX19_04706at 94.551 kb on + strand, within MPMX19_04706at 94.551 kb on + strand, within MPMX19_04706at 94.551 kb on + strand, within MPMX19_04706at 94.551 kb on + strand, within MPMX19_04706at 94.551 kb on + strand, within MPMX19_04706at 94.552 kb on - strand, within MPMX19_04706at 94.552 kb on - strand, within MPMX19_04706at 94.552 kb on - strand, within MPMX19_04706at 94.552 kb on - strand, within MPMX19_04706at 94.552 kb on - strand, within MPMX19_04706at 94.552 kb on - strand, within MPMX19_04706at 94.555 kb on - strand, within MPMX19_04706at 94.812 kb on + strand, within MPMX19_04706at 94.812 kb on + strand, within MPMX19_04706at 94.812 kb on + strand, within MPMX19_04706at 94.812 kb on + strand, within MPMX19_04706at 94.812 kb on + strand, within MPMX19_04706at 94.812 kb on + strand, within MPMX19_04706at 94.812 kb on + strand, within MPMX19_04706at 94.812 kb on + strand, within MPMX19_04706at 94.812 kb on + strand, within MPMX19_04706at 94.812 kb on + strand, within MPMX19_04706at 94.812 kb on + strand, within MPMX19_04706at 94.812 kb on + strand, within MPMX19_04706at 94.812 kb on + strand, within MPMX19_04706at 94.812 kb on + strand, within MPMX19_04706at 94.813 kb on - strand, within MPMX19_04706at 94.813 kb on - strand, within MPMX19_04706at 94.813 kb on - strand, within MPMX19_04706at 94.813 kb on - strand, within MPMX19_04706at 94.813 kb on - strand, within MPMX19_04706at 94.813 kb on - strand, within MPMX19_04706at 94.813 kb on - strand, within MPMX19_04706at 94.813 kb on - strand, within MPMX19_04706at 94.813 kb on - strand, within MPMX19_04706at 94.813 kb on - strand, within MPMX19_04706at 94.813 kb on - strand, within MPMX19_04706at 94.813 kb on - strand, within MPMX19_04706at 94.813 kb on - strand, within MPMX19_04706at 94.878 kb on + strand, within MPMX19_04706at 94.878 kb on + strand, within MPMX19_04706at 94.878 kb on + strand, within MPMX19_04706at 94.879 kb on - strand, within MPMX19_04706at 94.920 kb on + strand, within MPMX19_04706at 94.920 kb on + strand, within MPMX19_04706at 94.920 kb on + strand, within MPMX19_04706at 94.920 kb on + strand, within MPMX19_04706at 94.921 kb on - strand, within MPMX19_04706at 94.921 kb on - strand, within MPMX19_04706at 94.923 kb on + strand, within MPMX19_04706at 94.923 kb on + strand, within MPMX19_04706at 94.923 kb on + strand, within MPMX19_04706at 94.924 kb on - strand, within MPMX19_04706at 94.924 kb on - strand, within MPMX19_04706at 94.924 kb on - strand, within MPMX19_04706at 94.947 kb on + strand, within MPMX19_04706at 94.947 kb on + strand, within MPMX19_04706at 94.947 kb on + strand, within MPMX19_04706at 94.947 kb on + strand, within MPMX19_04706at 94.947 kb on + strand, within MPMX19_04706at 94.947 kb on + strand, within MPMX19_04706at 94.947 kb on + strand, within MPMX19_04706at 94.947 kb on + strand, within MPMX19_04706at 94.947 kb on + strand, within MPMX19_04706at 94.947 kb on + strand, within MPMX19_04706at 94.947 kb on + strand, within MPMX19_04706at 94.947 kb on + strand, within MPMX19_04706at 94.947 kb on + strand, within MPMX19_04706at 94.948 kb on - strand, within MPMX19_04706at 94.948 kb on - strand, within MPMX19_04706at 94.948 kb on - strand, within MPMX19_04706at 94.948 kb on - strand, within MPMX19_04706at 94.948 kb on - strand, within MPMX19_04706at 94.948 kb on - strand, within MPMX19_04706at 94.948 kb on - strand, within MPMX19_04706at 94.948 kb on - strand, within MPMX19_04706at 94.948 kb on - strand, within MPMX19_04706at 94.948 kb on - strand, within MPMX19_04706at 94.948 kb on - strand, within MPMX19_04706at 95.142 kb on + strandat 95.142 kb on + strandat 95.142 kb on + strandat 95.142 kb on + strandat 95.142 kb on + strandat 95.142 kb on + strandat 95.142 kb on + strandat 95.143 kb on - strandat 95.143 kb on - strandat 95.143 kb on - strandat 95.143 kb on - strandat 95.143 kb on - strandat 95.143 kb on - strandat 95.211 kb on + strandat 95.211 kb on + strandat 95.211 kb on + strandat 95.211 kb on + strandat 95.212 kb on - strandat 95.212 kb on - strandat 95.220 kb on + strandat 95.220 kb on + strandat 95.220 kb on + strandat 95.221 kb on - strandat 95.405 kb on + strand, within MPMX19_04707at 95.405 kb on + strand, within MPMX19_04707at 95.405 kb on + strand, within MPMX19_04707at 95.405 kb on + strand, within MPMX19_04707at 95.406 kb on - strand, within MPMX19_04707at 95.406 kb on - strand, within MPMX19_04707at 95.406 kb on - strand, within MPMX19_04707at 95.406 kb on - strand, within MPMX19_04707at 95.406 kb on - strand, within MPMX19_04707at 95.406 kb on - strand, within MPMX19_04707at 95.406 kb on - strand, within MPMX19_04707at 95.406 kb on - strand, within MPMX19_04707at 95.406 kb on - strand, within MPMX19_04707at 95.406 kb on - strand, within MPMX19_04707at 95.406 kb on - strand, within MPMX19_04707at 95.594 kb on + strand, within MPMX19_04707at 95.594 kb on + strand, within MPMX19_04707at 95.595 kb on - strand, within MPMX19_04707at 95.595 kb on - strand, within MPMX19_04707at 95.595 kb on - strand, within MPMX19_04707at 95.595 kb on - strand, within MPMX19_04707at 95.595 kb on - strand, within MPMX19_04707at 95.630 kb on + strandat 95.631 kb on - strandat 95.631 kb on - strandat 95.838 kb on + strand, within MPMX19_04708at 95.838 kb on + strand, within MPMX19_04708at 95.839 kb on - strand, within MPMX19_04708at 96.003 kb on + strand, within MPMX19_04708at 96.004 kb on - strand, within MPMX19_04708at 96.004 kb on - strand, within MPMX19_04708at 96.012 kb on + strand, within MPMX19_04708at 96.012 kb on + strand, within MPMX19_04708at 96.012 kb on + strand, within MPMX19_04708at 96.012 kb on + strand, within MPMX19_04708at 96.012 kb on + strand, within MPMX19_04708at 96.012 kb on + strand, within MPMX19_04708at 96.012 kb on + strand, within MPMX19_04708at 96.013 kb on - strand, within MPMX19_04708at 96.013 kb on - strand, within MPMX19_04708at 96.013 kb on - strand, within MPMX19_04708at 96.013 kb on - strand, within MPMX19_04708at 96.013 kb on - strand, within MPMX19_04708at 96.066 kb on + strand, within MPMX19_04708at 96.066 kb on + strand, within MPMX19_04708at 96.066 kb on + strand, within MPMX19_04708at 96.066 kb on + strand, within MPMX19_04708at 96.066 kb on + strand, within MPMX19_04708at 96.066 kb on + strand, within MPMX19_04708at 96.067 kb on - strand, within MPMX19_04708at 96.067 kb on - strand, within MPMX19_04708at 96.144 kb on + strand, within MPMX19_04708at 96.345 kb on + strand, within MPMX19_04708at 96.346 kb on - strand, within MPMX19_04708at 96.346 kb on - strand, within MPMX19_04708at 96.346 kb on - strand, within MPMX19_04708at 96.450 kb on + strand, within MPMX19_04708at 96.450 kb on + strand, within MPMX19_04708at 96.450 kb on + strand, within MPMX19_04708at 96.451 kb on - strand, within MPMX19_04708at 96.451 kb on - strand, within MPMX19_04708at 96.451 kb on - strand, within MPMX19_04708at 96.547 kb on + strand, within MPMX19_04708at 96.547 kb on + strand, within MPMX19_04708at 96.547 kb on + strand, within MPMX19_04708at 96.547 kb on + strand, within MPMX19_04708at 96.591 kb on + strand, within MPMX19_04708at 96.591 kb on + strand, within MPMX19_04708at 96.591 kb on + strand, within MPMX19_04708at 96.591 kb on + strand, within MPMX19_04708at 96.591 kb on + strand, within MPMX19_04708at 96.591 kb on + strand, within MPMX19_04708at 96.591 kb on + strand, within MPMX19_04708at 96.591 kb on + strand, within MPMX19_04708at 96.591 kb on + strand, within MPMX19_04708at 96.591 kb on + strand, within MPMX19_04708at 96.592 kb on - strand, within MPMX19_04708at 96.592 kb on - strand, within MPMX19_04708at 96.639 kb on + strand, within MPMX19_04708at 96.639 kb on + strand, within MPMX19_04708at 96.639 kb on + strand, within MPMX19_04708

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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94,345 - MPMX19_04706 0.68 -0.4
94,356 + MPMX19_04706 0.69 -1.0
94,356 + MPMX19_04706 0.69 -0.5
94,356 + MPMX19_04706 0.69 -0.8
94,356 + MPMX19_04706 0.69 +0.4
94,357 - MPMX19_04706 0.69 -1.7
94,357 - MPMX19_04706 0.69 -2.0
94,357 - MPMX19_04706 0.69 -0.1
94,357 - MPMX19_04706 0.69 +0.1
94,551 + MPMX19_04706 0.75 +0.8
94,551 + MPMX19_04706 0.75 +2.8
94,551 + MPMX19_04706 0.75 +0.2
94,551 + MPMX19_04706 0.75 +0.5
94,551 + MPMX19_04706 0.75 +0.0
94,551 + MPMX19_04706 0.75 +0.2
94,551 + MPMX19_04706 0.75 -0.1
94,551 + MPMX19_04706 0.75 -0.7
94,552 - MPMX19_04706 0.75 +1.2
94,552 - MPMX19_04706 0.75 +0.2
94,552 - MPMX19_04706 0.75 -1.3
94,552 - MPMX19_04706 0.75 +0.3
94,552 - MPMX19_04706 0.75 +0.8
94,552 - MPMX19_04706 0.75 -1.4
94,555 - MPMX19_04706 0.75 +1.0
94,812 + MPMX19_04706 0.84 -0.5
94,812 + MPMX19_04706 0.84 -2.5
94,812 + MPMX19_04706 0.84 -0.5
94,812 + MPMX19_04706 0.84 -1.0
94,812 + MPMX19_04706 0.84 +0.2
94,812 + MPMX19_04706 0.84 +0.5
94,812 + MPMX19_04706 0.84 -0.3
94,812 + MPMX19_04706 0.84 -0.5
94,812 + MPMX19_04706 0.84 -0.8
94,812 + MPMX19_04706 0.84 -0.1
94,812 + MPMX19_04706 0.84 +0.0
94,812 + MPMX19_04706 0.84 -1.5
94,812 + MPMX19_04706 0.84 -1.1
94,812 + MPMX19_04706 0.84 +0.7
94,813 - MPMX19_04706 0.84 -1.4
94,813 - MPMX19_04706 0.84 +0.6
94,813 - MPMX19_04706 0.84 -0.1
94,813 - MPMX19_04706 0.84 -0.8
94,813 - MPMX19_04706 0.84 +0.0
94,813 - MPMX19_04706 0.84 +3.0
94,813 - MPMX19_04706 0.84 -0.8
94,813 - MPMX19_04706 0.84 -0.4
94,813 - MPMX19_04706 0.84 -1.1
94,813 - MPMX19_04706 0.84 -0.1
94,813 - MPMX19_04706 0.84 -0.5
94,813 - MPMX19_04706 0.84 +0.2
94,813 - MPMX19_04706 0.84 +0.0
94,878 + MPMX19_04706 0.86 -0.9
94,878 + MPMX19_04706 0.86 -0.8
94,878 + MPMX19_04706 0.86 -1.4
94,879 - MPMX19_04706 0.86 -0.1
94,920 + MPMX19_04706 0.87 -1.7
94,920 + MPMX19_04706 0.87 +1.5
94,920 + MPMX19_04706 0.87 -1.9
94,920 + MPMX19_04706 0.87 -0.5
94,921 - MPMX19_04706 0.87 -2.3
94,921 - MPMX19_04706 0.87 +1.0
94,923 + MPMX19_04706 0.87 -0.1
94,923 + MPMX19_04706 0.87 -0.1
94,923 + MPMX19_04706 0.87 +0.3
94,924 - MPMX19_04706 0.87 +0.5
94,924 - MPMX19_04706 0.87 -1.3
94,924 - MPMX19_04706 0.87 -2.0
94,947 + MPMX19_04706 0.88 -2.0
94,947 + MPMX19_04706 0.88 -0.8
94,947 + MPMX19_04706 0.88 +0.5
94,947 + MPMX19_04706 0.88 +1.2
94,947 + MPMX19_04706 0.88 +0.0
94,947 + MPMX19_04706 0.88 -1.3
94,947 + MPMX19_04706 0.88 +0.7
94,947 + MPMX19_04706 0.88 -0.3
94,947 + MPMX19_04706 0.88 -0.7
94,947 + MPMX19_04706 0.88 -3.2
94,947 + MPMX19_04706 0.88 -0.8
94,947 + MPMX19_04706 0.88 -2.3
94,947 + MPMX19_04706 0.88 -0.4
94,948 - MPMX19_04706 0.88 +1.0
94,948 - MPMX19_04706 0.88 -2.0
94,948 - MPMX19_04706 0.88 -1.5
94,948 - MPMX19_04706 0.88 -1.4
94,948 - MPMX19_04706 0.88 -1.0
94,948 - MPMX19_04706 0.88 -1.0
94,948 - MPMX19_04706 0.88 +0.7
94,948 - MPMX19_04706 0.88 -1.3
94,948 - MPMX19_04706 0.88 +0.0
94,948 - MPMX19_04706 0.88 +0.8
94,948 - MPMX19_04706 0.88 -1.3
95,142 + -1.0
95,142 + -0.8
95,142 + -1.5
95,142 + -0.7
95,142 + +0.2
95,142 + -1.9
95,142 + -0.3
95,143 - -1.1
95,143 - -1.5
95,143 - +2.0
95,143 - -1.1
95,143 - -0.4
95,143 - -1.4
95,211 + -0.1
95,211 + +0.3
95,211 + -1.7
95,211 + -0.5
95,212 - -0.5
95,212 - -0.8
95,220 + -1.6
95,220 + -0.8
95,220 + -0.6
95,221 - -1.9
95,405 + MPMX19_04707 0.31 +0.8
95,405 + MPMX19_04707 0.31 +0.5
95,405 + MPMX19_04707 0.31 +0.1
95,405 + MPMX19_04707 0.31 -0.5
95,406 - MPMX19_04707 0.31 +0.4
95,406 - MPMX19_04707 0.31 -1.1
95,406 - MPMX19_04707 0.31 +2.0
95,406 - MPMX19_04707 0.31 -0.7
95,406 - MPMX19_04707 0.31 +0.2
95,406 - MPMX19_04707 0.31 -0.5
95,406 - MPMX19_04707 0.31 -0.1
95,406 - MPMX19_04707 0.31 -1.3
95,406 - MPMX19_04707 0.31 -1.0
95,406 - MPMX19_04707 0.31 -0.4
95,406 - MPMX19_04707 0.31 +1.9
95,594 + MPMX19_04707 0.83 +0.7
95,594 + MPMX19_04707 0.83 -0.1
95,595 - MPMX19_04707 0.84 -0.5
95,595 - MPMX19_04707 0.84 -1.4
95,595 - MPMX19_04707 0.84 +0.0
95,595 - MPMX19_04707 0.84 -1.4
95,595 - MPMX19_04707 0.84 +0.2
95,630 + +0.2
95,631 - +0.6
95,631 - +0.5
95,838 + MPMX19_04708 0.14 -0.3
95,838 + MPMX19_04708 0.14 -0.8
95,839 - MPMX19_04708 0.14 +1.0
96,003 + MPMX19_04708 0.27 -1.0
96,004 - MPMX19_04708 0.27 -1.4
96,004 - MPMX19_04708 0.27 -2.4
96,012 + MPMX19_04708 0.28 -0.3
96,012 + MPMX19_04708 0.28 +0.5
96,012 + MPMX19_04708 0.28 +0.2
96,012 + MPMX19_04708 0.28 -1.4
96,012 + MPMX19_04708 0.28 -0.5
96,012 + MPMX19_04708 0.28 -0.8
96,012 + MPMX19_04708 0.28 -1.0
96,013 - MPMX19_04708 0.28 -0.1
96,013 - MPMX19_04708 0.28 -0.2
96,013 - MPMX19_04708 0.28 -1.3
96,013 - MPMX19_04708 0.28 +0.0
96,013 - MPMX19_04708 0.28 -0.3
96,066 + MPMX19_04708 0.32 -0.6
96,066 + MPMX19_04708 0.32 -1.0
96,066 + MPMX19_04708 0.32 -0.4
96,066 + MPMX19_04708 0.32 +0.3
96,066 + MPMX19_04708 0.32 -1.0
96,066 + MPMX19_04708 0.32 -1.0
96,067 - MPMX19_04708 0.32 +0.6
96,067 - MPMX19_04708 0.32 -1.7
96,144 + MPMX19_04708 0.38 -1.7
96,345 + MPMX19_04708 0.54 -0.3
96,346 - MPMX19_04708 0.54 -1.5
96,346 - MPMX19_04708 0.54 +1.3
96,346 - MPMX19_04708 0.54 -0.3
96,450 + MPMX19_04708 0.63 +0.5
96,450 + MPMX19_04708 0.63 +0.3
96,450 + MPMX19_04708 0.63 -0.1
96,451 - MPMX19_04708 0.63 -1.1
96,451 - MPMX19_04708 0.63 -0.9
96,451 - MPMX19_04708 0.63 +0.3
96,547 + MPMX19_04708 0.70 -1.7
96,547 + MPMX19_04708 0.70 +0.9
96,547 + MPMX19_04708 0.70 +0.7
96,547 + MPMX19_04708 0.70 -1.5
96,591 + MPMX19_04708 0.74 -1.3
96,591 + MPMX19_04708 0.74 +1.5
96,591 + MPMX19_04708 0.74 +1.5
96,591 + MPMX19_04708 0.74 -0.4
96,591 + MPMX19_04708 0.74 +0.5
96,591 + MPMX19_04708 0.74 -1.0
96,591 + MPMX19_04708 0.74 -1.0
96,591 + MPMX19_04708 0.74 -1.0
96,591 + MPMX19_04708 0.74 -0.8
96,591 + MPMX19_04708 0.74 -1.5
96,592 - MPMX19_04708 0.74 -0.5
96,592 - MPMX19_04708 0.74 -0.7
96,639 + MPMX19_04708 0.78 -0.5
96,639 + MPMX19_04708 0.78 -0.2
96,639 + MPMX19_04708 0.78 -0.4

Or see this region's nucleotide sequence