Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04705

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04704 and MPMX19_04705 are separated by 15 nucleotidesMPMX19_04705 and MPMX19_04706 are separated by 11 nucleotides MPMX19_04704: MPMX19_04704 - Serine hydroxymethyltransferase 2, at 90,444 to 91,718 _04704 MPMX19_04705: MPMX19_04705 - hypothetical protein, at 91,734 to 92,288 _04705 MPMX19_04706: MPMX19_04706 - Sarcosine oxidase subunit alpha, at 92,300 to 95,299 _04706 Position (kb) 91 92 93Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 90.815 kb on + strand, within MPMX19_04704at 90.815 kb on + strand, within MPMX19_04704at 90.815 kb on + strand, within MPMX19_04704at 90.816 kb on - strand, within MPMX19_04704at 90.856 kb on + strand, within MPMX19_04704at 90.856 kb on + strand, within MPMX19_04704at 90.856 kb on + strand, within MPMX19_04704at 90.856 kb on + strand, within MPMX19_04704at 90.856 kb on + strand, within MPMX19_04704at 90.856 kb on + strand, within MPMX19_04704at 90.857 kb on - strand, within MPMX19_04704at 90.857 kb on - strand, within MPMX19_04704at 91.099 kb on + strand, within MPMX19_04704at 91.099 kb on + strand, within MPMX19_04704at 91.100 kb on - strand, within MPMX19_04704at 91.123 kb on + strand, within MPMX19_04704at 91.123 kb on + strand, within MPMX19_04704at 91.123 kb on + strand, within MPMX19_04704at 91.124 kb on - strand, within MPMX19_04704at 91.124 kb on - strand, within MPMX19_04704at 91.124 kb on - strand, within MPMX19_04704at 91.124 kb on - strand, within MPMX19_04704at 91.246 kb on + strand, within MPMX19_04704at 91.246 kb on + strand, within MPMX19_04704at 91.246 kb on + strand, within MPMX19_04704at 91.246 kb on + strand, within MPMX19_04704at 91.246 kb on + strand, within MPMX19_04704at 91.246 kb on + strand, within MPMX19_04704at 91.247 kb on - strand, within MPMX19_04704at 91.247 kb on - strand, within MPMX19_04704at 91.247 kb on - strand, within MPMX19_04704at 91.247 kb on - strand, within MPMX19_04704at 91.247 kb on - strand, within MPMX19_04704at 91.279 kb on + strand, within MPMX19_04704at 91.279 kb on + strand, within MPMX19_04704at 91.279 kb on + strand, within MPMX19_04704at 91.280 kb on - strand, within MPMX19_04704at 91.280 kb on - strand, within MPMX19_04704at 91.519 kb on + strand, within MPMX19_04704at 91.520 kb on - strand, within MPMX19_04704at 91.520 kb on - strand, within MPMX19_04704at 91.522 kb on + strand, within MPMX19_04704at 91.522 kb on + strand, within MPMX19_04704at 91.522 kb on + strand, within MPMX19_04704at 91.522 kb on + strand, within MPMX19_04704at 91.522 kb on + strand, within MPMX19_04704at 91.523 kb on - strand, within MPMX19_04704at 91.549 kb on + strand, within MPMX19_04704at 91.549 kb on + strand, within MPMX19_04704at 91.550 kb on - strand, within MPMX19_04704at 91.550 kb on - strand, within MPMX19_04704at 91.550 kb on - strand, within MPMX19_04704at 91.550 kb on - strand, within MPMX19_04704at 91.550 kb on - strand, within MPMX19_04704at 91.550 kb on - strand, within MPMX19_04704at 91.630 kb on + strandat 91.630 kb on + strandat 91.631 kb on - strandat 92.292 kb on + strandat 92.292 kb on + strandat 92.293 kb on - strandat 92.293 kb on - strandat 92.293 kb on - strandat 92.293 kb on - strandat 92.293 kb on - strandat 92.293 kb on - strandat 92.293 kb on - strandat 92.301 kb on + strandat 92.301 kb on + strandat 92.302 kb on - strandat 92.302 kb on - strandat 92.302 kb on - strandat 92.302 kb on - strandat 92.302 kb on - strandat 92.463 kb on + strandat 92.463 kb on + strandat 92.463 kb on + strandat 92.463 kb on + strandat 92.464 kb on - strandat 92.464 kb on - strandat 92.721 kb on + strand, within MPMX19_04706at 92.721 kb on + strand, within MPMX19_04706at 92.721 kb on + strand, within MPMX19_04706at 92.721 kb on + strand, within MPMX19_04706at 92.721 kb on + strand, within MPMX19_04706at 92.722 kb on - strand, within MPMX19_04706at 92.722 kb on - strand, within MPMX19_04706at 92.722 kb on - strand, within MPMX19_04706at 92.722 kb on - strand, within MPMX19_04706at 92.722 kb on - strand, within MPMX19_04706at 92.722 kb on - strand, within MPMX19_04706at 92.722 kb on - strand, within MPMX19_04706at 92.722 kb on - strand, within MPMX19_04706at 92.722 kb on - strand, within MPMX19_04706at 92.722 kb on - strand, within MPMX19_04706at 92.722 kb on - strand, within MPMX19_04706at 93.072 kb on + strand, within MPMX19_04706at 93.072 kb on + strand, within MPMX19_04706at 93.072 kb on + strand, within MPMX19_04706at 93.072 kb on + strand, within MPMX19_04706at 93.072 kb on + strand, within MPMX19_04706at 93.072 kb on + strand, within MPMX19_04706at 93.072 kb on + strand, within MPMX19_04706at 93.073 kb on - strand, within MPMX19_04706at 93.073 kb on - strand, within MPMX19_04706at 93.073 kb on - strand, within MPMX19_04706at 93.073 kb on - strand, within MPMX19_04706at 93.073 kb on - strand, within MPMX19_04706at 93.073 kb on - strand, within MPMX19_04706at 93.243 kb on + strand, within MPMX19_04706at 93.243 kb on + strand, within MPMX19_04706at 93.243 kb on + strand, within MPMX19_04706at 93.243 kb on + strand, within MPMX19_04706at 93.243 kb on + strand, within MPMX19_04706at 93.243 kb on + strand, within MPMX19_04706at 93.243 kb on + strand, within MPMX19_04706at 93.243 kb on + strand, within MPMX19_04706at 93.243 kb on + strand, within MPMX19_04706at 93.243 kb on + strand, within MPMX19_04706at 93.244 kb on - strand, within MPMX19_04706at 93.244 kb on - strand, within MPMX19_04706at 93.244 kb on - strand, within MPMX19_04706at 93.244 kb on - strand, within MPMX19_04706at 93.244 kb on - strand, within MPMX19_04706at 93.244 kb on - strand, within MPMX19_04706at 93.244 kb on - strand, within MPMX19_04706at 93.244 kb on - strand, within MPMX19_04706at 93.244 kb on - strand, within MPMX19_04706at 93.244 kb on - strand, within MPMX19_04706at 93.244 kb on - strand, within MPMX19_04706

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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90,815 + MPMX19_04704 0.29 -1.2
90,815 + MPMX19_04704 0.29 +0.5
90,815 + MPMX19_04704 0.29 -0.8
90,816 - MPMX19_04704 0.29 +2.0
90,856 + MPMX19_04704 0.32 -1.8
90,856 + MPMX19_04704 0.32 -1.3
90,856 + MPMX19_04704 0.32 -1.0
90,856 + MPMX19_04704 0.32 -1.2
90,856 + MPMX19_04704 0.32 -1.2
90,856 + MPMX19_04704 0.32 -0.1
90,857 - MPMX19_04704 0.32 -0.7
90,857 - MPMX19_04704 0.32 -0.8
91,099 + MPMX19_04704 0.51 -1.3
91,099 + MPMX19_04704 0.51 -1.7
91,100 - MPMX19_04704 0.51 -0.9
91,123 + MPMX19_04704 0.53 -0.3
91,123 + MPMX19_04704 0.53 -0.7
91,123 + MPMX19_04704 0.53 -0.9
91,124 - MPMX19_04704 0.53 -0.7
91,124 - MPMX19_04704 0.53 -3.1
91,124 - MPMX19_04704 0.53 -0.6
91,124 - MPMX19_04704 0.53 -1.0
91,246 + MPMX19_04704 0.63 -1.0
91,246 + MPMX19_04704 0.63 -1.4
91,246 + MPMX19_04704 0.63 -1.0
91,246 + MPMX19_04704 0.63 -0.5
91,246 + MPMX19_04704 0.63 -0.5
91,246 + MPMX19_04704 0.63 -1.0
91,247 - MPMX19_04704 0.63 -1.1
91,247 - MPMX19_04704 0.63 +2.0
91,247 - MPMX19_04704 0.63 -0.5
91,247 - MPMX19_04704 0.63 +0.2
91,247 - MPMX19_04704 0.63 -1.1
91,279 + MPMX19_04704 0.65 -0.5
91,279 + MPMX19_04704 0.65 -1.3
91,279 + MPMX19_04704 0.65 -0.2
91,280 - MPMX19_04704 0.66 -0.8
91,280 - MPMX19_04704 0.66 -0.5
91,519 + MPMX19_04704 0.84 -0.7
91,520 - MPMX19_04704 0.84 +1.0
91,520 - MPMX19_04704 0.84 -0.7
91,522 + MPMX19_04704 0.85 -0.2
91,522 + MPMX19_04704 0.85 -0.5
91,522 + MPMX19_04704 0.85 +0.2
91,522 + MPMX19_04704 0.85 -0.3
91,522 + MPMX19_04704 0.85 -1.6
91,523 - MPMX19_04704 0.85 -0.5
91,549 + MPMX19_04704 0.87 -0.0
91,549 + MPMX19_04704 0.87 -0.7
91,550 - MPMX19_04704 0.87 -0.8
91,550 - MPMX19_04704 0.87 -1.6
91,550 - MPMX19_04704 0.87 -0.4
91,550 - MPMX19_04704 0.87 -1.1
91,550 - MPMX19_04704 0.87 -1.3
91,550 - MPMX19_04704 0.87 -0.5
91,630 + -0.2
91,630 + +0.5
91,631 - -1.1
92,292 + -0.1
92,292 + -1.5
92,293 - +1.4
92,293 - -1.0
92,293 - +0.5
92,293 - -1.3
92,293 - -0.5
92,293 - -1.0
92,293 - +0.1
92,301 + -0.4
92,301 + +0.0
92,302 - -0.4
92,302 - +0.2
92,302 - -0.9
92,302 - -1.1
92,302 - -0.1
92,463 + +0.7
92,463 + -0.3
92,463 + -1.6
92,463 + -1.6
92,464 - -2.2
92,464 - +1.6
92,721 + MPMX19_04706 0.14 -1.0
92,721 + MPMX19_04706 0.14 -0.4
92,721 + MPMX19_04706 0.14 +1.0
92,721 + MPMX19_04706 0.14 -1.0
92,721 + MPMX19_04706 0.14 +1.2
92,722 - MPMX19_04706 0.14 -0.2
92,722 - MPMX19_04706 0.14 -0.3
92,722 - MPMX19_04706 0.14 -0.7
92,722 - MPMX19_04706 0.14 +1.4
92,722 - MPMX19_04706 0.14 -0.4
92,722 - MPMX19_04706 0.14 -0.8
92,722 - MPMX19_04706 0.14 -1.4
92,722 - MPMX19_04706 0.14 -0.1
92,722 - MPMX19_04706 0.14 -0.3
92,722 - MPMX19_04706 0.14 -1.3
92,722 - MPMX19_04706 0.14 -1.0
93,072 + MPMX19_04706 0.26 -1.8
93,072 + MPMX19_04706 0.26 -1.0
93,072 + MPMX19_04706 0.26 -0.8
93,072 + MPMX19_04706 0.26 +0.0
93,072 + MPMX19_04706 0.26 -0.4
93,072 + MPMX19_04706 0.26 -0.7
93,072 + MPMX19_04706 0.26 -0.5
93,073 - MPMX19_04706 0.26 -0.8
93,073 - MPMX19_04706 0.26 -0.5
93,073 - MPMX19_04706 0.26 -0.8
93,073 - MPMX19_04706 0.26 -0.5
93,073 - MPMX19_04706 0.26 -0.4
93,073 - MPMX19_04706 0.26 +0.2
93,243 + MPMX19_04706 0.31 -1.0
93,243 + MPMX19_04706 0.31 -1.3
93,243 + MPMX19_04706 0.31 -2.3
93,243 + MPMX19_04706 0.31 +0.5
93,243 + MPMX19_04706 0.31 -1.5
93,243 + MPMX19_04706 0.31 -0.6
93,243 + MPMX19_04706 0.31 +0.6
93,243 + MPMX19_04706 0.31 +0.5
93,243 + MPMX19_04706 0.31 -0.5
93,243 + MPMX19_04706 0.31 -0.2
93,244 - MPMX19_04706 0.31 -0.7
93,244 - MPMX19_04706 0.31 -0.0
93,244 - MPMX19_04706 0.31 -0.3
93,244 - MPMX19_04706 0.31 +0.6
93,244 - MPMX19_04706 0.31 +0.2
93,244 - MPMX19_04706 0.31 -1.1
93,244 - MPMX19_04706 0.31 +1.0
93,244 - MPMX19_04706 0.31 -0.3
93,244 - MPMX19_04706 0.31 -1.1
93,244 - MPMX19_04706 0.31 -2.3
93,244 - MPMX19_04706 0.31 -0.1

Or see this region's nucleotide sequence