Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04683

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04682 and MPMX19_04683 overlap by 4 nucleotidesMPMX19_04683 and MPMX19_04684 overlap by 4 nucleotidesMPMX19_04684 and MPMX19_04685 are separated by 21 nucleotides MPMX19_04682: MPMX19_04682 - hypothetical protein, at 67,411 to 68,607 _04682 MPMX19_04683: MPMX19_04683 - Acylamidase, at 68,604 to 70,010 _04683 MPMX19_04684: MPMX19_04684 - HTH-type transcriptional repressor RspR, at 70,007 to 70,744 _04684 MPMX19_04685: MPMX19_04685 - D-hydantoinase, at 70,766 to 72,202 _04685 Position (kb) 68 69 70 71Strain fitness (log2 ratio) -2 -1 0 1 2at 67.615 kb on + strand, within MPMX19_04682at 67.616 kb on - strand, within MPMX19_04682at 67.987 kb on + strand, within MPMX19_04682at 68.095 kb on + strand, within MPMX19_04682at 68.096 kb on - strand, within MPMX19_04682at 68.096 kb on - strand, within MPMX19_04682at 68.545 kb on + strandat 68.545 kb on + strandat 68.545 kb on + strandat 68.545 kb on + strandat 68.545 kb on + strandat 68.546 kb on - strandat 68.546 kb on - strandat 68.546 kb on - strandat 68.546 kb on - strandat 68.546 kb on - strandat 69.210 kb on + strand, within MPMX19_04683at 69.387 kb on + strand, within MPMX19_04683at 69.567 kb on + strand, within MPMX19_04683at 69.567 kb on + strand, within MPMX19_04683at 69.568 kb on - strand, within MPMX19_04683at 69.568 kb on - strand, within MPMX19_04683at 70.139 kb on + strand, within MPMX19_04684at 70.139 kb on + strand, within MPMX19_04684at 70.139 kb on + strand, within MPMX19_04684at 70.140 kb on - strand, within MPMX19_04684at 70.140 kb on - strand, within MPMX19_04684at 70.149 kb on + strand, within MPMX19_04684at 70.149 kb on + strand, within MPMX19_04684at 70.149 kb on + strand, within MPMX19_04684at 70.149 kb on + strand, within MPMX19_04684at 70.149 kb on + strand, within MPMX19_04684at 70.149 kb on + strand, within MPMX19_04684at 70.149 kb on + strand, within MPMX19_04684at 70.149 kb on + strand, within MPMX19_04684at 70.150 kb on - strand, within MPMX19_04684at 70.150 kb on - strand, within MPMX19_04684at 70.150 kb on - strand, within MPMX19_04684at 70.150 kb on - strand, within MPMX19_04684at 70.150 kb on - strand, within MPMX19_04684at 70.150 kb on - strand, within MPMX19_04684at 70.454 kb on + strand, within MPMX19_04684at 70.454 kb on + strand, within MPMX19_04684at 70.454 kb on + strand, within MPMX19_04684at 70.454 kb on + strand, within MPMX19_04684at 70.454 kb on + strand, within MPMX19_04684at 70.454 kb on + strand, within MPMX19_04684at 70.455 kb on - strand, within MPMX19_04684at 70.455 kb on - strand, within MPMX19_04684at 70.455 kb on - strand, within MPMX19_04684at 70.455 kb on - strand, within MPMX19_04684at 70.455 kb on - strand, within MPMX19_04684at 70.455 kb on - strand, within MPMX19_04684at 70.455 kb on - strand, within MPMX19_04684at 70.562 kb on + strand, within MPMX19_04684at 70.742 kb on + strandat 70.742 kb on + strandat 70.742 kb on + strandat 70.742 kb on + strandat 70.742 kb on + strandat 70.742 kb on + strandat 70.742 kb on + strandat 70.742 kb on + strandat 70.742 kb on + strandat 70.742 kb on + strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.743 kb on - strandat 70.936 kb on - strand, within MPMX19_04685at 70.944 kb on + strand, within MPMX19_04685at 70.944 kb on + strand, within MPMX19_04685at 70.944 kb on + strand, within MPMX19_04685at 70.944 kb on + strand, within MPMX19_04685at 70.945 kb on - strand, within MPMX19_04685at 70.945 kb on - strand, within MPMX19_04685at 70.945 kb on - strand, within MPMX19_04685at 70.945 kb on - strand, within MPMX19_04685

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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67,615 + MPMX19_04682 0.17 -0.3
67,616 - MPMX19_04682 0.17 -1.1
67,987 + MPMX19_04682 0.48 +1.2
68,095 + MPMX19_04682 0.57 -2.1
68,096 - MPMX19_04682 0.57 +0.5
68,096 - MPMX19_04682 0.57 +0.6
68,545 + +0.5
68,545 + -0.4
68,545 + +2.0
68,545 + +0.6
68,545 + +0.3
68,546 - -1.2
68,546 - +0.0
68,546 - -0.1
68,546 - -0.3
68,546 - -0.8
69,210 + MPMX19_04683 0.43 -1.9
69,387 + MPMX19_04683 0.56 +0.6
69,567 + MPMX19_04683 0.68 +1.2
69,567 + MPMX19_04683 0.68 -0.5
69,568 - MPMX19_04683 0.69 -0.3
69,568 - MPMX19_04683 0.69 -1.6
70,139 + MPMX19_04684 0.18 +1.7
70,139 + MPMX19_04684 0.18 -0.3
70,139 + MPMX19_04684 0.18 -1.7
70,140 - MPMX19_04684 0.18 +0.2
70,140 - MPMX19_04684 0.18 +1.4
70,149 + MPMX19_04684 0.19 +0.3
70,149 + MPMX19_04684 0.19 +0.4
70,149 + MPMX19_04684 0.19 -1.4
70,149 + MPMX19_04684 0.19 +0.2
70,149 + MPMX19_04684 0.19 +0.7
70,149 + MPMX19_04684 0.19 -0.5
70,149 + MPMX19_04684 0.19 +1.0
70,149 + MPMX19_04684 0.19 -0.5
70,150 - MPMX19_04684 0.19 +0.0
70,150 - MPMX19_04684 0.19 -0.8
70,150 - MPMX19_04684 0.19 +0.3
70,150 - MPMX19_04684 0.19 +0.0
70,150 - MPMX19_04684 0.19 +0.0
70,150 - MPMX19_04684 0.19 +0.1
70,454 + MPMX19_04684 0.61 -0.1
70,454 + MPMX19_04684 0.61 -0.9
70,454 + MPMX19_04684 0.61 +0.0
70,454 + MPMX19_04684 0.61 -0.5
70,454 + MPMX19_04684 0.61 +0.5
70,454 + MPMX19_04684 0.61 -1.0
70,455 - MPMX19_04684 0.61 -0.7
70,455 - MPMX19_04684 0.61 +0.9
70,455 - MPMX19_04684 0.61 +0.5
70,455 - MPMX19_04684 0.61 +0.6
70,455 - MPMX19_04684 0.61 -1.9
70,455 - MPMX19_04684 0.61 -1.7
70,455 - MPMX19_04684 0.61 -1.4
70,562 + MPMX19_04684 0.75 +0.1
70,742 + +0.6
70,742 + +0.2
70,742 + -1.5
70,742 + +0.5
70,742 + -0.6
70,742 + -2.3
70,742 + +1.0
70,742 + -0.8
70,742 + -0.5
70,742 + -0.4
70,743 - +0.0
70,743 - -1.7
70,743 - +0.3
70,743 - -0.5
70,743 - -1.1
70,743 - -0.6
70,743 - -1.9
70,743 - -0.1
70,743 - -0.5
70,743 - +0.2
70,743 - -0.4
70,936 - MPMX19_04685 0.12 -1.3
70,944 + MPMX19_04685 0.12 -1.1
70,944 + MPMX19_04685 0.12 +0.6
70,944 + MPMX19_04685 0.12 -1.0
70,944 + MPMX19_04685 0.12 -2.4
70,945 - MPMX19_04685 0.12 +0.7
70,945 - MPMX19_04685 0.12 -1.5
70,945 - MPMX19_04685 0.12 -1.4
70,945 - MPMX19_04685 0.12 -1.3

Or see this region's nucleotide sequence