Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04672

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04670 and MPMX19_04671 are separated by 156 nucleotidesMPMX19_04671 and MPMX19_04672 are separated by 48 nucleotidesMPMX19_04672 and MPMX19_04673 are separated by 100 nucleotides MPMX19_04670: MPMX19_04670 - hypothetical protein, at 56,356 to 56,910 _04670 MPMX19_04671: MPMX19_04671 - hypothetical protein, at 57,067 to 57,462 _04671 MPMX19_04672: MPMX19_04672 - Aldehyde reductase YahK, at 57,511 to 58,560 _04672 MPMX19_04673: MPMX19_04673 - Purine ribonucleoside efflux pump NepI, at 58,661 to 59,878 _04673 Position (kb) 57 58 59Strain fitness (log2 ratio) -2 -1 0 1 2at 56.561 kb on - strand, within MPMX19_04670at 56.716 kb on + strand, within MPMX19_04670at 56.716 kb on + strand, within MPMX19_04670at 56.716 kb on + strand, within MPMX19_04670at 56.716 kb on + strand, within MPMX19_04670at 56.716 kb on + strand, within MPMX19_04670at 56.716 kb on + strand, within MPMX19_04670at 56.717 kb on - strand, within MPMX19_04670at 56.717 kb on - strand, within MPMX19_04670at 56.717 kb on - strand, within MPMX19_04670at 56.717 kb on - strand, within MPMX19_04670at 56.717 kb on - strand, within MPMX19_04670at 56.717 kb on - strand, within MPMX19_04670at 56.717 kb on - strand, within MPMX19_04670at 56.717 kb on - strand, within MPMX19_04670at 56.717 kb on - strand, within MPMX19_04670at 56.717 kb on - strand, within MPMX19_04670at 56.717 kb on - strand, within MPMX19_04670at 56.854 kb on - strand, within MPMX19_04670at 56.854 kb on - strand, within MPMX19_04670at 56.854 kb on - strand, within MPMX19_04670at 56.854 kb on - strand, within MPMX19_04670at 56.985 kb on - strandat 56.985 kb on - strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.007 kb on + strandat 57.008 kb on - strandat 57.008 kb on - strandat 57.008 kb on - strandat 57.008 kb on - strandat 57.008 kb on - strandat 57.008 kb on - strandat 57.008 kb on - strandat 57.008 kb on - strandat 57.008 kb on - strandat 57.008 kb on - strandat 57.008 kb on - strandat 57.008 kb on - strandat 57.008 kb on - strandat 57.130 kb on - strand, within MPMX19_04671at 57.451 kb on + strandat 57.451 kb on + strandat 57.451 kb on + strandat 57.452 kb on + strandat 57.452 kb on - strandat 57.452 kb on - strandat 57.452 kb on - strandat 57.452 kb on - strandat 57.452 kb on - strandat 57.452 kb on - strandat 57.526 kb on + strandat 57.526 kb on + strandat 57.526 kb on + strandat 57.527 kb on - strandat 57.616 kb on + strand, within MPMX19_04672at 57.616 kb on + strand, within MPMX19_04672at 57.616 kb on + strand, within MPMX19_04672at 57.617 kb on - strand, within MPMX19_04672at 57.617 kb on - strand, within MPMX19_04672at 57.826 kb on + strand, within MPMX19_04672at 57.826 kb on + strand, within MPMX19_04672at 57.827 kb on - strand, within MPMX19_04672at 57.827 kb on - strand, within MPMX19_04672at 57.827 kb on - strand, within MPMX19_04672at 57.850 kb on + strand, within MPMX19_04672at 57.850 kb on + strand, within MPMX19_04672at 57.850 kb on + strand, within MPMX19_04672at 57.850 kb on + strand, within MPMX19_04672at 57.850 kb on + strand, within MPMX19_04672at 57.850 kb on + strand, within MPMX19_04672at 57.850 kb on + strand, within MPMX19_04672at 57.850 kb on + strand, within MPMX19_04672at 57.851 kb on - strand, within MPMX19_04672at 57.851 kb on - strand, within MPMX19_04672at 57.851 kb on - strand, within MPMX19_04672at 57.851 kb on - strand, within MPMX19_04672at 57.851 kb on - strand, within MPMX19_04672at 57.851 kb on - strand, within MPMX19_04672at 57.895 kb on + strand, within MPMX19_04672at 57.925 kb on + strand, within MPMX19_04672at 57.925 kb on + strand, within MPMX19_04672at 57.925 kb on + strand, within MPMX19_04672at 57.925 kb on + strand, within MPMX19_04672at 57.925 kb on + strand, within MPMX19_04672at 57.925 kb on + strand, within MPMX19_04672at 57.926 kb on - strand, within MPMX19_04672at 57.926 kb on - strand, within MPMX19_04672at 57.926 kb on - strand, within MPMX19_04672at 57.926 kb on - strand, within MPMX19_04672at 57.926 kb on - strand, within MPMX19_04672at 57.926 kb on - strand, within MPMX19_04672at 57.926 kb on - strand, within MPMX19_04672at 58.000 kb on + strand, within MPMX19_04672at 58.000 kb on + strand, within MPMX19_04672at 58.000 kb on + strand, within MPMX19_04672at 58.000 kb on + strand, within MPMX19_04672at 58.000 kb on + strand, within MPMX19_04672at 58.000 kb on + strand, within MPMX19_04672at 58.000 kb on + strand, within MPMX19_04672at 58.001 kb on - strand, within MPMX19_04672at 58.001 kb on - strand, within MPMX19_04672at 58.001 kb on - strand, within MPMX19_04672at 58.001 kb on - strand, within MPMX19_04672at 58.074 kb on + strand, within MPMX19_04672at 58.074 kb on + strand, within MPMX19_04672at 58.075 kb on - strand, within MPMX19_04672at 58.075 kb on - strand, within MPMX19_04672at 58.075 kb on - strand, within MPMX19_04672at 58.075 kb on - strand, within MPMX19_04672at 58.492 kb on + strandat 58.492 kb on + strandat 58.493 kb on - strandat 58.493 kb on - strandat 58.493 kb on - strandat 58.493 kb on - strandat 58.522 kb on + strandat 58.523 kb on - strandat 58.523 kb on - strandat 58.582 kb on - strandat 58.660 kb on + strandat 58.660 kb on + strandat 58.660 kb on + strandat 58.660 kb on + strandat 58.661 kb on - strandat 58.661 kb on - strandat 58.661 kb on - strandat 58.661 kb on - strandat 58.661 kb on - strandat 58.661 kb on - strandat 58.661 kb on - strandat 58.661 kb on - strandat 58.661 kb on - strandat 58.661 kb on - strandat 58.797 kb on + strand, within MPMX19_04673at 58.983 kb on - strand, within MPMX19_04673at 59.372 kb on + strand, within MPMX19_04673at 59.372 kb on + strand, within MPMX19_04673at 59.372 kb on + strand, within MPMX19_04673at 59.373 kb on - strand, within MPMX19_04673at 59.373 kb on - strand, within MPMX19_04673at 59.373 kb on - strand, within MPMX19_04673at 59.373 kb on - strand, within MPMX19_04673at 59.373 kb on - strand, within MPMX19_04673at 59.373 kb on - strand, within MPMX19_04673at 59.373 kb on - strand, within MPMX19_04673

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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56,561 - MPMX19_04670 0.37 -0.8
56,716 + MPMX19_04670 0.65 -1.0
56,716 + MPMX19_04670 0.65 -0.3
56,716 + MPMX19_04670 0.65 +0.7
56,716 + MPMX19_04670 0.65 -0.8
56,716 + MPMX19_04670 0.65 -0.4
56,716 + MPMX19_04670 0.65 +2.0
56,717 - MPMX19_04670 0.65 +0.5
56,717 - MPMX19_04670 0.65 +1.7
56,717 - MPMX19_04670 0.65 -1.3
56,717 - MPMX19_04670 0.65 +0.3
56,717 - MPMX19_04670 0.65 +0.0
56,717 - MPMX19_04670 0.65 +0.5
56,717 - MPMX19_04670 0.65 -0.9
56,717 - MPMX19_04670 0.65 +0.5
56,717 - MPMX19_04670 0.65 -0.1
56,717 - MPMX19_04670 0.65 -1.0
56,717 - MPMX19_04670 0.65 -0.2
56,854 - MPMX19_04670 0.90 +0.2
56,854 - MPMX19_04670 0.90 -0.8
56,854 - MPMX19_04670 0.90 -0.8
56,854 - MPMX19_04670 0.90 -1.7
56,985 - -0.3
56,985 - -0.8
57,007 + -0.5
57,007 + +0.8
57,007 + -0.1
57,007 + -1.5
57,007 + -1.5
57,007 + -1.2
57,007 + +0.8
57,007 + -0.8
57,007 + -0.7
57,007 + +0.0
57,007 + -0.9
57,007 + -2.1
57,007 + +0.5
57,007 + +0.5
57,007 + -1.3
57,007 + +0.5
57,007 + -0.4
57,007 + +0.2
57,007 + -1.1
57,007 + +0.0
57,007 + -1.7
57,008 - -0.5
57,008 - -0.3
57,008 - +1.0
57,008 - -0.1
57,008 - -0.7
57,008 - -1.1
57,008 - -1.0
57,008 - -1.3
57,008 - +0.0
57,008 - -1.7
57,008 - -0.6
57,008 - +0.0
57,008 - -1.2
57,130 - MPMX19_04671 0.16 -0.1
57,451 + -1.7
57,451 + -0.5
57,451 + -1.9
57,452 + +0.2
57,452 - -0.1
57,452 - -0.2
57,452 - -0.1
57,452 - +0.9
57,452 - -0.5
57,452 - -1.1
57,526 + -0.7
57,526 + -0.6
57,526 + +0.0
57,527 - -0.4
57,616 + MPMX19_04672 0.10 -1.0
57,616 + MPMX19_04672 0.10 -0.8
57,616 + MPMX19_04672 0.10 +0.0
57,617 - MPMX19_04672 0.10 +0.0
57,617 - MPMX19_04672 0.10 -1.8
57,826 + MPMX19_04672 0.30 -0.8
57,826 + MPMX19_04672 0.30 +0.2
57,827 - MPMX19_04672 0.30 -1.3
57,827 - MPMX19_04672 0.30 -1.8
57,827 - MPMX19_04672 0.30 -0.7
57,850 + MPMX19_04672 0.32 -0.1
57,850 + MPMX19_04672 0.32 -1.1
57,850 + MPMX19_04672 0.32 -0.9
57,850 + MPMX19_04672 0.32 -0.5
57,850 + MPMX19_04672 0.32 -2.0
57,850 + MPMX19_04672 0.32 -1.9
57,850 + MPMX19_04672 0.32 -1.1
57,850 + MPMX19_04672 0.32 -2.0
57,851 - MPMX19_04672 0.32 +0.5
57,851 - MPMX19_04672 0.32 -0.8
57,851 - MPMX19_04672 0.32 -0.6
57,851 - MPMX19_04672 0.32 -0.3
57,851 - MPMX19_04672 0.32 -1.3
57,851 - MPMX19_04672 0.32 -1.2
57,895 + MPMX19_04672 0.37 +0.7
57,925 + MPMX19_04672 0.39 -1.4
57,925 + MPMX19_04672 0.39 +0.2
57,925 + MPMX19_04672 0.39 -1.0
57,925 + MPMX19_04672 0.39 +0.0
57,925 + MPMX19_04672 0.39 +0.1
57,925 + MPMX19_04672 0.39 -0.9
57,926 - MPMX19_04672 0.40 +0.6
57,926 - MPMX19_04672 0.40 -0.1
57,926 - MPMX19_04672 0.40 -1.3
57,926 - MPMX19_04672 0.40 +0.7
57,926 - MPMX19_04672 0.40 -0.8
57,926 - MPMX19_04672 0.40 -0.3
57,926 - MPMX19_04672 0.40 +1.2
58,000 + MPMX19_04672 0.47 -0.0
58,000 + MPMX19_04672 0.47 -0.4
58,000 + MPMX19_04672 0.47 -0.9
58,000 + MPMX19_04672 0.47 -0.8
58,000 + MPMX19_04672 0.47 +0.5
58,000 + MPMX19_04672 0.47 -0.6
58,000 + MPMX19_04672 0.47 -0.2
58,001 - MPMX19_04672 0.47 -1.7
58,001 - MPMX19_04672 0.47 -0.5
58,001 - MPMX19_04672 0.47 -1.1
58,001 - MPMX19_04672 0.47 -0.8
58,074 + MPMX19_04672 0.54 -1.1
58,074 + MPMX19_04672 0.54 -0.8
58,075 - MPMX19_04672 0.54 -0.5
58,075 - MPMX19_04672 0.54 -0.3
58,075 - MPMX19_04672 0.54 -1.0
58,075 - MPMX19_04672 0.54 -1.3
58,492 + +0.2
58,492 + -1.0
58,493 - +0.0
58,493 - +0.7
58,493 - +0.5
58,493 - -1.5
58,522 + -1.1
58,523 - -0.1
58,523 - -1.0
58,582 - +0.2
58,660 + -1.9
58,660 + +0.5
58,660 + +0.7
58,660 + -2.0
58,661 - -0.1
58,661 - -0.5
58,661 - -0.8
58,661 - -0.4
58,661 - -2.0
58,661 - -0.7
58,661 - -0.1
58,661 - -0.5
58,661 - -1.3
58,661 - +0.0
58,797 + MPMX19_04673 0.11 -1.5
58,983 - MPMX19_04673 0.26 -0.3
59,372 + MPMX19_04673 0.58 -0.5
59,372 + MPMX19_04673 0.58 +0.2
59,372 + MPMX19_04673 0.58 -0.4
59,373 - MPMX19_04673 0.58 +0.1
59,373 - MPMX19_04673 0.58 -1.4
59,373 - MPMX19_04673 0.58 -1.4
59,373 - MPMX19_04673 0.58 -0.7
59,373 - MPMX19_04673 0.58 -1.5
59,373 - MPMX19_04673 0.58 -0.1
59,373 - MPMX19_04673 0.58 -0.8

Or see this region's nucleotide sequence