Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04657

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04656 and MPMX19_04657 overlap by 4 nucleotidesMPMX19_04657 and MPMX19_04658 are separated by 1 nucleotides MPMX19_04656: MPMX19_04656 - Acetophenone carboxylase delta subunit, at 42,243 to 44,000 _04656 MPMX19_04657: MPMX19_04657 - 2,3-dimethylmalate lyase, at 43,997 to 44,899 _04657 MPMX19_04658: MPMX19_04658 - hypothetical protein, at 44,901 to 46,328 _04658 Position (kb) 43 44 45Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 43.090 kb on + strand, within MPMX19_04656at 43.090 kb on + strand, within MPMX19_04656at 43.090 kb on + strand, within MPMX19_04656at 43.090 kb on + strand, within MPMX19_04656at 43.090 kb on + strand, within MPMX19_04656at 43.090 kb on + strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.114 kb on + strand, within MPMX19_04656at 43.115 kb on - strand, within MPMX19_04656at 43.243 kb on + strand, within MPMX19_04656at 43.244 kb on - strand, within MPMX19_04656at 43.244 kb on - strand, within MPMX19_04656at 43.244 kb on - strand, within MPMX19_04656at 43.244 kb on - strand, within MPMX19_04656at 43.258 kb on + strand, within MPMX19_04656at 43.258 kb on + strand, within MPMX19_04656at 43.258 kb on + strand, within MPMX19_04656at 43.259 kb on - strand, within MPMX19_04656at 43.259 kb on - strand, within MPMX19_04656at 43.259 kb on - strand, within MPMX19_04656at 43.259 kb on - strand, within MPMX19_04656at 43.259 kb on - strand, within MPMX19_04656at 43.426 kb on + strand, within MPMX19_04656at 43.426 kb on + strand, within MPMX19_04656at 43.426 kb on + strand, within MPMX19_04656at 43.426 kb on + strand, within MPMX19_04656at 43.426 kb on + strand, within MPMX19_04656at 43.426 kb on + strand, within MPMX19_04656at 43.426 kb on + strand, within MPMX19_04656at 43.426 kb on + strand, within MPMX19_04656at 43.427 kb on - strand, within MPMX19_04656at 43.427 kb on - strand, within MPMX19_04656at 43.427 kb on - strand, within MPMX19_04656at 43.427 kb on - strand, within MPMX19_04656at 43.427 kb on - strand, within MPMX19_04656at 43.684 kb on + strand, within MPMX19_04656at 43.684 kb on + strand, within MPMX19_04656at 43.685 kb on - strand, within MPMX19_04656at 43.685 kb on - strand, within MPMX19_04656at 43.837 kb on + strandat 43.837 kb on + strandat 43.837 kb on + strandat 43.838 kb on - strandat 43.838 kb on - strandat 43.838 kb on - strandat 43.838 kb on - strandat 43.838 kb on - strandat 43.838 kb on - strandat 43.894 kb on + strandat 44.036 kb on - strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.151 kb on + strand, within MPMX19_04657at 44.152 kb on - strand, within MPMX19_04657at 44.152 kb on - strand, within MPMX19_04657at 44.152 kb on - strand, within MPMX19_04657at 44.154 kb on + strand, within MPMX19_04657at 44.154 kb on + strand, within MPMX19_04657at 44.154 kb on + strand, within MPMX19_04657at 44.155 kb on - strand, within MPMX19_04657at 44.155 kb on - strand, within MPMX19_04657at 44.155 kb on - strand, within MPMX19_04657at 44.155 kb on - strand, within MPMX19_04657at 44.155 kb on - strand, within MPMX19_04657at 44.155 kb on - strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.380 kb on - strand, within MPMX19_04657at 44.380 kb on - strand, within MPMX19_04657at 44.380 kb on - strand, within MPMX19_04657at 44.380 kb on - strand, within MPMX19_04657at 44.637 kb on + strand, within MPMX19_04657at 44.638 kb on - strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.755 kb on - strand, within MPMX19_04657at 44.755 kb on - strand, within MPMX19_04657at 44.755 kb on - strand, within MPMX19_04657at 44.755 kb on - strand, within MPMX19_04657at 44.778 kb on + strand, within MPMX19_04657at 44.778 kb on + strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.829 kb on + strandat 44.829 kb on + strandat 44.830 kb on - strandat 44.830 kb on - strandat 44.830 kb on - strandat 44.830 kb on - strandat 44.830 kb on - strandat 45.070 kb on + strand, within MPMX19_04658at 45.070 kb on + strand, within MPMX19_04658at 45.070 kb on + strand, within MPMX19_04658at 45.070 kb on + strand, within MPMX19_04658at 45.071 kb on - strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.469 kb on + strand, within MPMX19_04658at 45.469 kb on + strand, within MPMX19_04658at 45.469 kb on + strand, within MPMX19_04658at 45.470 kb on - strand, within MPMX19_04658at 45.470 kb on - strand, within MPMX19_04658at 45.470 kb on - strand, within MPMX19_04658at 45.496 kb on + strand, within MPMX19_04658at 45.496 kb on + strand, within MPMX19_04658at 45.496 kb on + strand, within MPMX19_04658at 45.496 kb on + strand, within MPMX19_04658at 45.496 kb on + strand, within MPMX19_04658at 45.496 kb on + strand, within MPMX19_04658at 45.497 kb on - strand, within MPMX19_04658at 45.497 kb on - strand, within MPMX19_04658at 45.497 kb on - strand, within MPMX19_04658at 45.497 kb on - strand, within MPMX19_04658at 45.497 kb on - strand, within MPMX19_04658at 45.497 kb on - strand, within MPMX19_04658at 45.667 kb on + strand, within MPMX19_04658at 45.667 kb on + strand, within MPMX19_04658at 45.667 kb on + strand, within MPMX19_04658at 45.880 kb on + strand, within MPMX19_04658

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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43,090 + MPMX19_04656 0.48 -0.8
43,090 + MPMX19_04656 0.48 +0.2
43,090 + MPMX19_04656 0.48 -0.8
43,090 + MPMX19_04656 0.48 +0.0
43,090 + MPMX19_04656 0.48 +0.3
43,090 + MPMX19_04656 0.48 +0.7
43,091 - MPMX19_04656 0.48 -0.5
43,091 - MPMX19_04656 0.48 -0.3
43,091 - MPMX19_04656 0.48 +1.6
43,091 - MPMX19_04656 0.48 +0.0
43,091 - MPMX19_04656 0.48 -0.5
43,091 - MPMX19_04656 0.48 +0.8
43,091 - MPMX19_04656 0.48 -1.0
43,091 - MPMX19_04656 0.48 +0.5
43,114 + MPMX19_04656 0.50 -2.3
43,115 - MPMX19_04656 0.50 -0.8
43,243 + MPMX19_04656 0.57 -0.3
43,244 - MPMX19_04656 0.57 +0.0
43,244 - MPMX19_04656 0.57 -0.4
43,244 - MPMX19_04656 0.57 -0.5
43,244 - MPMX19_04656 0.57 -0.5
43,258 + MPMX19_04656 0.58 -0.4
43,258 + MPMX19_04656 0.58 -1.3
43,258 + MPMX19_04656 0.58 +0.6
43,259 - MPMX19_04656 0.58 -1.7
43,259 - MPMX19_04656 0.58 -1.9
43,259 - MPMX19_04656 0.58 -0.3
43,259 - MPMX19_04656 0.58 +0.7
43,259 - MPMX19_04656 0.58 -2.0
43,426 + MPMX19_04656 0.67 -0.3
43,426 + MPMX19_04656 0.67 -1.3
43,426 + MPMX19_04656 0.67 -0.5
43,426 + MPMX19_04656 0.67 -1.0
43,426 + MPMX19_04656 0.67 -1.1
43,426 + MPMX19_04656 0.67 -1.8
43,426 + MPMX19_04656 0.67 +0.2
43,426 + MPMX19_04656 0.67 -1.5
43,427 - MPMX19_04656 0.67 +0.7
43,427 - MPMX19_04656 0.67 +0.5
43,427 - MPMX19_04656 0.67 -0.5
43,427 - MPMX19_04656 0.67 +1.7
43,427 - MPMX19_04656 0.67 -0.0
43,684 + MPMX19_04656 0.82 +1.0
43,684 + MPMX19_04656 0.82 +1.0
43,685 - MPMX19_04656 0.82 +0.0
43,685 - MPMX19_04656 0.82 -0.9
43,837 + -0.4
43,837 + -1.3
43,837 + -1.8
43,838 - -1.9
43,838 - -1.1
43,838 - -1.4
43,838 - +0.5
43,838 - -0.8
43,838 - -0.4
43,894 + -1.5
44,036 - -2.3
44,037 + -0.8
44,037 + +1.5
44,037 + -0.2
44,037 + -0.5
44,037 + -1.0
44,037 + -2.5
44,037 + -1.5
44,037 + -0.0
44,037 + -2.1
44,037 + -1.0
44,037 + +0.8
44,037 + -3.7
44,037 + -1.0
44,038 - -1.2
44,038 - +0.1
44,038 - -0.5
44,038 - -0.3
44,038 - +0.5
44,038 - +0.5
44,038 - -1.3
44,038 - -2.0
44,038 - -1.5
44,151 + MPMX19_04657 0.17 -0.2
44,152 - MPMX19_04657 0.17 -1.3
44,152 - MPMX19_04657 0.17 -0.9
44,152 - MPMX19_04657 0.17 +1.0
44,154 + MPMX19_04657 0.17 -0.1
44,154 + MPMX19_04657 0.17 -1.2
44,154 + MPMX19_04657 0.17 -2.1
44,155 - MPMX19_04657 0.17 +0.1
44,155 - MPMX19_04657 0.17 +0.5
44,155 - MPMX19_04657 0.17 -0.1
44,155 - MPMX19_04657 0.17 +0.8
44,155 - MPMX19_04657 0.17 +0.3
44,155 - MPMX19_04657 0.17 +2.0
44,379 + MPMX19_04657 0.42 +0.3
44,379 + MPMX19_04657 0.42 -1.2
44,379 + MPMX19_04657 0.42 +0.2
44,379 + MPMX19_04657 0.42 +0.5
44,379 + MPMX19_04657 0.42 +0.3
44,379 + MPMX19_04657 0.42 +1.5
44,379 + MPMX19_04657 0.42 +0.0
44,380 - MPMX19_04657 0.42 -1.5
44,380 - MPMX19_04657 0.42 -0.9
44,380 - MPMX19_04657 0.42 -0.3
44,380 - MPMX19_04657 0.42 -0.1
44,637 + MPMX19_04657 0.71 +0.5
44,638 - MPMX19_04657 0.71 +1.0
44,754 + MPMX19_04657 0.84 +0.6
44,754 + MPMX19_04657 0.84 -2.0
44,754 + MPMX19_04657 0.84 -2.0
44,754 + MPMX19_04657 0.84 -0.7
44,754 + MPMX19_04657 0.84 +0.6
44,754 + MPMX19_04657 0.84 -0.7
44,754 + MPMX19_04657 0.84 -0.4
44,755 - MPMX19_04657 0.84 -0.8
44,755 - MPMX19_04657 0.84 -1.0
44,755 - MPMX19_04657 0.84 +0.3
44,755 - MPMX19_04657 0.84 -2.0
44,778 + MPMX19_04657 0.86 +0.8
44,778 + MPMX19_04657 0.86 -0.5
44,779 - MPMX19_04657 0.87 +0.5
44,779 - MPMX19_04657 0.87 +0.0
44,779 - MPMX19_04657 0.87 -0.6
44,779 - MPMX19_04657 0.87 +0.5
44,779 - MPMX19_04657 0.87 +1.0
44,779 - MPMX19_04657 0.87 +0.3
44,779 - MPMX19_04657 0.87 -2.2
44,779 - MPMX19_04657 0.87 -1.9
44,829 + -1.0
44,829 + -0.3
44,830 - -0.3
44,830 - -1.5
44,830 - +1.0
44,830 - -0.8
44,830 - -0.8
45,070 + MPMX19_04658 0.12 +0.5
45,070 + MPMX19_04658 0.12 -2.6
45,070 + MPMX19_04658 0.12 -0.6
45,070 + MPMX19_04658 0.12 -1.2
45,071 - MPMX19_04658 0.12 -1.5
45,373 + MPMX19_04658 0.33 +0.1
45,373 + MPMX19_04658 0.33 +0.6
45,373 + MPMX19_04658 0.33 -0.5
45,373 + MPMX19_04658 0.33 +0.0
45,373 + MPMX19_04658 0.33 +1.5
45,373 + MPMX19_04658 0.33 +0.5
45,373 + MPMX19_04658 0.33 +0.0
45,373 + MPMX19_04658 0.33 -0.5
45,373 + MPMX19_04658 0.33 -1.7
45,373 + MPMX19_04658 0.33 -0.3
45,373 + MPMX19_04658 0.33 -0.7
45,373 + MPMX19_04658 0.33 +1.2
45,373 + MPMX19_04658 0.33 +0.0
45,373 + MPMX19_04658 0.33 +0.8
45,373 + MPMX19_04658 0.33 -0.5
45,373 + MPMX19_04658 0.33 -0.6
45,373 + MPMX19_04658 0.33 -0.1
45,373 + MPMX19_04658 0.33 +0.8
45,373 + MPMX19_04658 0.33 -0.7
45,373 + MPMX19_04658 0.33 -0.9
45,373 + MPMX19_04658 0.33 +0.0
45,373 + MPMX19_04658 0.33 +0.8
45,373 + MPMX19_04658 0.33 -1.8
45,373 + MPMX19_04658 0.33 +0.3
45,373 + MPMX19_04658 0.33 -0.8
45,373 + MPMX19_04658 0.33 -1.1
45,373 + MPMX19_04658 0.33 -1.0
45,373 + MPMX19_04658 0.33 -1.9
45,374 - MPMX19_04658 0.33 +0.4
45,374 - MPMX19_04658 0.33 +0.0
45,374 - MPMX19_04658 0.33 +1.0
45,374 - MPMX19_04658 0.33 +0.0
45,374 - MPMX19_04658 0.33 -0.2
45,374 - MPMX19_04658 0.33 +0.7
45,374 - MPMX19_04658 0.33 +1.2
45,374 - MPMX19_04658 0.33 -0.3
45,374 - MPMX19_04658 0.33 +1.0
45,374 - MPMX19_04658 0.33 -0.4
45,374 - MPMX19_04658 0.33 -1.9
45,374 - MPMX19_04658 0.33 +0.1
45,374 - MPMX19_04658 0.33 -1.0
45,374 - MPMX19_04658 0.33 -0.1
45,374 - MPMX19_04658 0.33 -1.9
45,374 - MPMX19_04658 0.33 -0.9
45,374 - MPMX19_04658 0.33 -0.7
45,374 - MPMX19_04658 0.33 +0.2
45,374 - MPMX19_04658 0.33 +0.6
45,374 - MPMX19_04658 0.33 -1.0
45,374 - MPMX19_04658 0.33 +0.0
45,374 - MPMX19_04658 0.33 -1.0
45,374 - MPMX19_04658 0.33 -1.7
45,374 - MPMX19_04658 0.33 -1.3
45,374 - MPMX19_04658 0.33 -0.5
45,374 - MPMX19_04658 0.33 -0.3
45,374 - MPMX19_04658 0.33 -1.1
45,374 - MPMX19_04658 0.33 +0.4
45,374 - MPMX19_04658 0.33 -2.3
45,374 - MPMX19_04658 0.33 -0.5
45,374 - MPMX19_04658 0.33 +0.2
45,469 + MPMX19_04658 0.40 -0.1
45,469 + MPMX19_04658 0.40 -1.8
45,469 + MPMX19_04658 0.40 +0.2
45,470 - MPMX19_04658 0.40 -1.0
45,470 - MPMX19_04658 0.40 -1.2
45,470 - MPMX19_04658 0.40 -0.3
45,496 + MPMX19_04658 0.42 -0.6
45,496 + MPMX19_04658 0.42 +0.0
45,496 + MPMX19_04658 0.42 +0.5
45,496 + MPMX19_04658 0.42 -1.3
45,496 + MPMX19_04658 0.42 -0.3
45,496 + MPMX19_04658 0.42 +0.6
45,497 - MPMX19_04658 0.42 -0.1
45,497 - MPMX19_04658 0.42 -0.6
45,497 - MPMX19_04658 0.42 +1.0
45,497 - MPMX19_04658 0.42 -1.0
45,497 - MPMX19_04658 0.42 -1.1
45,497 - MPMX19_04658 0.42 +0.7
45,667 + MPMX19_04658 0.54 +1.0
45,667 + MPMX19_04658 0.54 +0.6
45,667 + MPMX19_04658 0.54 -0.1
45,880 + MPMX19_04658 0.69 -1.7

Or see this region's nucleotide sequence