Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04588 and MPMX19_04589 overlap by 56 nucleotides MPMX19_04589 and MPMX19_04590 are separated by 370 nucleotides
MPMX19_04588: MPMX19_04588 - Sensor histidine kinase RcsC, at 967,808 to 971,281
_04588
MPMX19_04589: MPMX19_04589 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 971,226 to 972,200
_04589
MPMX19_04590: MPMX19_04590 - Nitrate import ATP-binding protein NrtD, at 972,571 to 973,404
_04590
Position (kb) 971
972
973 Strain fitness (log2 ratio) -2
-1
0
1
2 at 970.979 kb on + strand at 970.979 kb on + strand at 970.979 kb on + strand at 970.980 kb on - strand at 970.980 kb on - strand at 970.980 kb on - strand at 970.980 kb on - strand at 970.980 kb on - strand at 971.084 kb on + strand at 971.084 kb on + strand at 971.084 kb on + strand at 971.084 kb on + strand at 971.084 kb on + strand at 971.084 kb on + strand at 971.180 kb on + strand at 971.180 kb on + strand at 971.180 kb on + strand at 971.180 kb on + strand at 971.180 kb on + strand at 971.180 kb on + strand at 971.180 kb on + strand at 971.180 kb on + strand at 971.180 kb on + strand at 971.181 kb on - strand at 971.181 kb on - strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.196 kb on - strand at 971.196 kb on - strand at 971.196 kb on - strand at 971.196 kb on - strand at 971.196 kb on - strand at 971.196 kb on - strand at 971.196 kb on - strand at 971.196 kb on - strand at 971.196 kb on - strand at 971.197 kb on + strand at 971.197 kb on + strand at 971.197 kb on + strand at 971.197 kb on + strand at 971.197 kb on + strand at 971.197 kb on + strand at 971.197 kb on + strand at 971.197 kb on + strand at 971.197 kb on + strand at 971.198 kb on - strand at 971.198 kb on - strand at 971.198 kb on - strand at 971.198 kb on - strand at 971.198 kb on - strand at 971.198 kb on - strand at 971.198 kb on - strand at 971.198 kb on - strand at 971.198 kb on - strand at 971.198 kb on - strand at 971.220 kb on - strand at 971.220 kb on - strand at 971.220 kb on - strand at 971.543 kb on + strand, within MPMX19_04589 at 971.543 kb on + strand, within MPMX19_04589 at 971.543 kb on + strand, within MPMX19_04589 at 971.543 kb on + strand, within MPMX19_04589 at 971.543 kb on + strand, within MPMX19_04589 at 971.544 kb on - strand, within MPMX19_04589 at 971.577 kb on + strand, within MPMX19_04589 at 971.577 kb on + strand, within MPMX19_04589 at 971.577 kb on + strand, within MPMX19_04589 at 971.577 kb on + strand, within MPMX19_04589 at 971.578 kb on - strand, within MPMX19_04589 at 971.578 kb on - strand, within MPMX19_04589 at 971.578 kb on - strand, within MPMX19_04589 at 971.578 kb on - strand, within MPMX19_04589 at 971.578 kb on - strand, within MPMX19_04589 at 971.578 kb on - strand, within MPMX19_04589 at 971.578 kb on - strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 972.129 kb on + strand at 972.129 kb on + strand at 972.129 kb on + strand at 972.129 kb on + strand at 972.129 kb on + strand at 972.129 kb on + strand at 972.129 kb on + strand at 972.129 kb on + strand at 972.129 kb on + strand at 972.129 kb on + strand at 972.129 kb on + strand at 972.130 kb on - strand at 972.130 kb on - strand at 972.130 kb on - strand at 972.130 kb on - strand at 972.130 kb on - strand at 972.130 kb on - strand at 972.130 kb on - strand at 972.130 kb on - strand at 972.198 kb on + strand at 972.198 kb on + strand at 972.198 kb on + strand at 972.198 kb on + strand at 972.213 kb on + strand at 972.213 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.335 kb on - strand at 972.335 kb on - strand at 972.335 kb on - strand at 972.335 kb on - strand at 972.335 kb on - strand at 972.335 kb on - strand at 972.335 kb on - strand at 972.335 kb on - strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.362 kb on - strand at 972.362 kb on - strand at 972.362 kb on - strand at 972.362 kb on - strand at 972.362 kb on - strand at 972.406 kb on + strand at 972.407 kb on - strand at 972.658 kb on - strand, within MPMX19_04590 at 972.674 kb on + strand, within MPMX19_04590 at 972.674 kb on + strand, within MPMX19_04590 at 972.674 kb on + strand, within MPMX19_04590 at 972.675 kb on - strand, within MPMX19_04590 at 972.675 kb on - strand, within MPMX19_04590 at 972.694 kb on + strand, within MPMX19_04590 at 972.694 kb on + strand, within MPMX19_04590 at 972.694 kb on + strand, within MPMX19_04590 at 972.694 kb on + strand, within MPMX19_04590 at 972.694 kb on + strand, within MPMX19_04590 at 972.694 kb on + strand, within MPMX19_04590 at 972.695 kb on - strand, within MPMX19_04590 at 972.695 kb on - strand, within MPMX19_04590 at 972.695 kb on - strand, within MPMX19_04590 at 972.695 kb on - strand, within MPMX19_04590 at 972.695 kb on - strand, within MPMX19_04590 at 972.695 kb on - strand, within MPMX19_04590 at 972.727 kb on + strand, within MPMX19_04590 at 972.727 kb on + strand, within MPMX19_04590 at 972.763 kb on + strand, within MPMX19_04590 at 972.763 kb on + strand, within MPMX19_04590 at 972.763 kb on + strand, within MPMX19_04590 at 972.763 kb on + strand, within MPMX19_04590 at 972.763 kb on + strand, within MPMX19_04590 at 972.763 kb on + strand, within MPMX19_04590 at 972.764 kb on - strand, within MPMX19_04590 at 972.764 kb on - strand, within MPMX19_04590 at 972.764 kb on - strand, within MPMX19_04590 at 972.764 kb on - strand, within MPMX19_04590 at 972.764 kb on - strand, within MPMX19_04590 at 972.764 kb on - strand, within MPMX19_04590 at 972.823 kb on + strand, within MPMX19_04590 at 972.824 kb on - strand, within MPMX19_04590 at 973.015 kb on + strand, within MPMX19_04590 at 973.015 kb on + strand, within MPMX19_04590 at 973.015 kb on + strand, within MPMX19_04590 at 973.015 kb on + strand, within MPMX19_04590 at 973.015 kb on + strand, within MPMX19_04590 at 973.015 kb on + strand, within MPMX19_04590 at 973.015 kb on + strand, within MPMX19_04590 at 973.015 kb on + strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.147 kb on + strand, within MPMX19_04590 at 973.147 kb on + strand, within MPMX19_04590 at 973.147 kb on + strand, within MPMX19_04590 at 973.148 kb on - strand, within MPMX19_04590 at 973.148 kb on - strand, within MPMX19_04590 at 973.148 kb on - strand, within MPMX19_04590
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 970,979 + +0.2 970,979 + +1.5 970,979 + -0.7 970,980 - -2.6 970,980 - +0.8 970,980 - -2.3 970,980 - -0.6 970,980 - +0.3 971,084 + +1.6 971,084 + -1.5 971,084 + -0.8 971,084 + +0.2 971,084 + +1.4 971,084 + +0.9 971,180 + +0.3 971,180 + -0.9 971,180 + -1.6 971,180 + -1.0 971,180 + +0.3 971,180 + +1.4 971,180 + -0.4 971,180 + -0.8 971,180 + +1.2 971,181 - -0.1 971,181 - -1.1 971,195 + -0.7 971,195 + -1.7 971,195 + +0.2 971,195 + +0.2 971,195 + -0.9 971,195 + +0.2 971,195 + -0.5 971,195 + +0.3 971,195 + +0.4 971,195 + -1.0 971,195 + +0.1 971,195 + -0.6 971,195 + -0.1 971,196 - -0.8 971,196 - -2.4 971,196 - -0.1 971,196 - -0.7 971,196 - -0.8 971,196 - +0.2 971,196 - +0.2 971,196 - -1.8 971,196 - -0.5 971,197 + -1.3 971,197 + +0.1 971,197 + +0.8 971,197 + +1.2 971,197 + +2.2 971,197 + -0.9 971,197 + +0.1 971,197 + +0.8 971,197 + -0.9 971,198 - -1.4 971,198 - -1.5 971,198 - +0.4 971,198 - -1.1 971,198 - -0.7 971,198 - -0.6 971,198 - +0.4 971,198 - -1.3 971,198 - -0.1 971,198 - -1.0 971,220 - -0.0 971,220 - -1.3 971,220 - +0.2 971,543 + MPMX19_04589 0.33 -0.2 971,543 + MPMX19_04589 0.33 +0.7 971,543 + MPMX19_04589 0.33 -1.3 971,543 + MPMX19_04589 0.33 -0.3 971,543 + MPMX19_04589 0.33 +0.3 971,544 - MPMX19_04589 0.33 +0.0 971,577 + MPMX19_04589 0.36 +0.6 971,577 + MPMX19_04589 0.36 -1.7 971,577 + MPMX19_04589 0.36 -0.0 971,577 + MPMX19_04589 0.36 -1.6 971,578 - MPMX19_04589 0.36 -1.1 971,578 - MPMX19_04589 0.36 +0.0 971,578 - MPMX19_04589 0.36 -0.0 971,578 - MPMX19_04589 0.36 +0.1 971,578 - MPMX19_04589 0.36 -1.1 971,578 - MPMX19_04589 0.36 -0.8 971,578 - MPMX19_04589 0.36 -0.1 971,622 + MPMX19_04589 0.41 +0.8 971,622 + MPMX19_04589 0.41 +0.9 971,622 + MPMX19_04589 0.41 +1.0 971,622 + MPMX19_04589 0.41 +0.7 971,622 + MPMX19_04589 0.41 +1.5 971,622 + MPMX19_04589 0.41 +1.0 971,622 + MPMX19_04589 0.41 -1.3 971,622 + MPMX19_04589 0.41 +1.0 971,622 + MPMX19_04589 0.41 +0.0 971,622 + MPMX19_04589 0.41 -0.9 971,622 + MPMX19_04589 0.41 +0.7 971,622 + MPMX19_04589 0.41 +0.4 971,622 + MPMX19_04589 0.41 +0.8 971,622 + MPMX19_04589 0.41 -0.3 971,622 + MPMX19_04589 0.41 +1.4 971,622 + MPMX19_04589 0.41 -0.8 971,623 - MPMX19_04589 0.41 -1.5 971,623 - MPMX19_04589 0.41 +0.6 971,623 - MPMX19_04589 0.41 -0.7 971,623 - MPMX19_04589 0.41 -0.3 971,623 - MPMX19_04589 0.41 -0.8 971,623 - MPMX19_04589 0.41 +0.2 971,623 - MPMX19_04589 0.41 -1.2 971,623 - MPMX19_04589 0.41 +0.9 971,623 - MPMX19_04589 0.41 +0.4 971,623 - MPMX19_04589 0.41 -1.7 971,623 - MPMX19_04589 0.41 -2.2 971,623 - MPMX19_04589 0.41 +1.0 971,623 - MPMX19_04589 0.41 -1.2 971,623 - MPMX19_04589 0.41 -0.6 972,129 + -0.2 972,129 + -1.5 972,129 + -1.3 972,129 + -1.5 972,129 + -1.8 972,129 + -0.3 972,129 + -0.0 972,129 + +0.5 972,129 + +0.1 972,129 + -0.9 972,129 + -1.3 972,130 - -1.6 972,130 - -1.8 972,130 - -0.7 972,130 - -1.6 972,130 - -0.6 972,130 - -0.6 972,130 - -0.6 972,130 - +0.7 972,198 + -2.4 972,198 + -1.3 972,198 + +0.4 972,198 + -0.9 972,213 + -0.8 972,213 + -0.4 972,334 + -1.5 972,334 + -1.1 972,334 + +0.2 972,334 + +0.0 972,334 + -1.7 972,334 + -0.2 972,334 + +0.6 972,334 + -0.6 972,334 + +0.2 972,334 + +1.0 972,334 + -1.0 972,334 + +0.6 972,334 + -0.1 972,334 + -0.3 972,334 + -0.5 972,334 + -1.0 972,334 + +0.8 972,334 + -0.6 972,335 - -0.2 972,335 - -0.9 972,335 - +1.2 972,335 - -0.4 972,335 - -0.1 972,335 - -1.9 972,335 - -1.5 972,335 - -1.8 972,361 + -0.6 972,361 + -0.6 972,361 + -0.8 972,361 + +1.6 972,361 + -1.1 972,361 + -0.5 972,361 + +0.2 972,361 + -1.2 972,361 + -1.8 972,361 + +0.0 972,361 + +0.6 972,361 + -0.0 972,361 + -1.0 972,362 - -0.5 972,362 - -1.4 972,362 - -0.4 972,362 - +0.6 972,362 - -1.1 972,406 + -1.4 972,407 - -1.3 972,658 - MPMX19_04590 0.10 -0.3 972,674 + MPMX19_04590 0.12 +0.7 972,674 + MPMX19_04590 0.12 +0.5 972,674 + MPMX19_04590 0.12 +0.8 972,675 - MPMX19_04590 0.12 -0.2 972,675 - MPMX19_04590 0.12 -0.1 972,694 + MPMX19_04590 0.15 +0.9 972,694 + MPMX19_04590 0.15 -1.4 972,694 + MPMX19_04590 0.15 -1.4 972,694 + MPMX19_04590 0.15 +0.9 972,694 + MPMX19_04590 0.15 -0.5 972,694 + MPMX19_04590 0.15 -0.4 972,695 - MPMX19_04590 0.15 -0.1 972,695 - MPMX19_04590 0.15 +0.8 972,695 - MPMX19_04590 0.15 -0.1 972,695 - MPMX19_04590 0.15 +1.2 972,695 - MPMX19_04590 0.15 -0.4 972,695 - MPMX19_04590 0.15 -0.2 972,727 + MPMX19_04590 0.19 +0.1 972,727 + MPMX19_04590 0.19 -1.1 972,763 + MPMX19_04590 0.23 -0.4 972,763 + MPMX19_04590 0.23 -0.2 972,763 + MPMX19_04590 0.23 +0.4 972,763 + MPMX19_04590 0.23 -0.7 972,763 + MPMX19_04590 0.23 +0.2 972,763 + MPMX19_04590 0.23 -0.1 972,764 - MPMX19_04590 0.23 -1.1 972,764 - MPMX19_04590 0.23 -0.3 972,764 - MPMX19_04590 0.23 -0.8 972,764 - MPMX19_04590 0.23 -0.6 972,764 - MPMX19_04590 0.23 -0.8 972,764 - MPMX19_04590 0.23 -0.6 972,823 + MPMX19_04590 0.30 +0.3 972,824 - MPMX19_04590 0.30 -0.3 973,015 + MPMX19_04590 0.53 +0.9 973,015 + MPMX19_04590 0.53 +0.6 973,015 + MPMX19_04590 0.53 +1.0 973,015 + MPMX19_04590 0.53 -0.1 973,015 + MPMX19_04590 0.53 +1.2 973,015 + MPMX19_04590 0.53 -1.0 973,015 + MPMX19_04590 0.53 +0.3 973,015 + MPMX19_04590 0.53 +0.2 973,016 - MPMX19_04590 0.53 -0.8 973,016 - MPMX19_04590 0.53 -0.9 973,016 - MPMX19_04590 0.53 -1.3 973,016 - MPMX19_04590 0.53 +0.2 973,016 - MPMX19_04590 0.53 -0.4 973,016 - MPMX19_04590 0.53 +0.9 973,016 - MPMX19_04590 0.53 -1.5 973,016 - MPMX19_04590 0.53 +0.1 973,016 - MPMX19_04590 0.53 +0.6 973,016 - MPMX19_04590 0.53 -0.9 973,016 - MPMX19_04590 0.53 -1.0 973,147 + MPMX19_04590 0.69 -1.0 973,147 + MPMX19_04590 0.69 -1.2 973,147 + MPMX19_04590 0.69 -1.0 973,148 - MPMX19_04590 0.69 +0.6 973,148 - MPMX19_04590 0.69 -0.3 973,148 - MPMX19_04590 0.69 +0.9
Or see this region's nucleotide sequence