Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04585

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04583 and MPMX19_04584 are separated by 46 nucleotidesMPMX19_04584 and MPMX19_04585 are separated by 15 nucleotidesMPMX19_04585 and MPMX19_04586 are separated by 12 nucleotides MPMX19_04583: MPMX19_04583 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 962,431 to 963,120 _04583 MPMX19_04584: MPMX19_04584 - Lipopolysaccharide export system ATP-binding protein LptB, at 963,167 to 963,913 _04584 MPMX19_04585: MPMX19_04585 - hypothetical protein, at 963,929 to 965,089 _04585 MPMX19_04586: MPMX19_04586 - High-affinity branched-chain amino acid transport system permease protein LivH, at 965,102 to 966,028 _04586 Position (kb) 963 964 965 966Strain fitness (log2 ratio) -2 -1 0 1 2at 963.089 kb on + strandat 963.090 kb on - strandat 963.468 kb on + strand, within MPMX19_04584at 963.469 kb on - strand, within MPMX19_04584at 963.592 kb on - strand, within MPMX19_04584at 963.630 kb on + strand, within MPMX19_04584at 963.630 kb on + strand, within MPMX19_04584at 963.630 kb on + strand, within MPMX19_04584at 963.825 kb on + strand, within MPMX19_04584at 963.826 kb on - strand, within MPMX19_04584at 963.826 kb on - strand, within MPMX19_04584at 963.826 kb on - strand, within MPMX19_04584at 963.895 kb on - strandat 963.895 kb on - strandat 964.026 kb on + strandat 964.027 kb on - strandat 964.027 kb on - strandat 964.027 kb on - strandat 964.027 kb on - strandat 964.027 kb on - strandat 964.027 kb on - strandat 964.156 kb on - strand, within MPMX19_04585at 964.156 kb on - strand, within MPMX19_04585at 964.197 kb on + strand, within MPMX19_04585at 964.197 kb on + strand, within MPMX19_04585at 964.197 kb on + strand, within MPMX19_04585at 964.198 kb on - strand, within MPMX19_04585at 964.198 kb on - strand, within MPMX19_04585at 964.198 kb on - strand, within MPMX19_04585at 964.413 kb on + strand, within MPMX19_04585at 964.413 kb on + strand, within MPMX19_04585at 964.413 kb on + strand, within MPMX19_04585at 964.413 kb on + strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.461 kb on + strand, within MPMX19_04585at 964.461 kb on + strand, within MPMX19_04585at 964.461 kb on + strand, within MPMX19_04585at 964.461 kb on + strand, within MPMX19_04585at 964.461 kb on + strand, within MPMX19_04585at 964.461 kb on + strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.545 kb on + strand, within MPMX19_04585at 964.546 kb on - strand, within MPMX19_04585at 964.546 kb on - strand, within MPMX19_04585at 964.546 kb on - strand, within MPMX19_04585at 964.546 kb on - strand, within MPMX19_04585at 964.612 kb on - strand, within MPMX19_04585at 964.612 kb on - strand, within MPMX19_04585at 964.843 kb on - strand, within MPMX19_04585at 964.932 kb on + strand, within MPMX19_04585at 964.932 kb on + strand, within MPMX19_04585at 964.933 kb on - strand, within MPMX19_04585at 964.933 kb on - strand, within MPMX19_04585at 964.933 kb on - strand, within MPMX19_04585at 964.933 kb on - strand, within MPMX19_04585at 964.941 kb on + strand, within MPMX19_04585at 964.941 kb on + strand, within MPMX19_04585at 964.941 kb on + strand, within MPMX19_04585at 964.941 kb on + strand, within MPMX19_04585at 964.941 kb on + strand, within MPMX19_04585at 964.941 kb on + strand, within MPMX19_04585at 964.941 kb on + strand, within MPMX19_04585at 965.093 kb on + strandat 965.093 kb on + strandat 965.093 kb on + strandat 965.093 kb on + strandat 965.093 kb on + strandat 965.093 kb on + strandat 965.093 kb on + strandat 965.094 kb on - strandat 965.094 kb on - strandat 965.094 kb on - strandat 965.094 kb on - strandat 965.094 kb on - strandat 965.094 kb on - strandat 965.094 kb on - strandat 965.094 kb on - strandat 965.094 kb on - strandat 965.094 kb on - strandat 965.094 kb on - strandat 965.310 kb on + strand, within MPMX19_04586at 965.310 kb on + strand, within MPMX19_04586at 965.310 kb on + strand, within MPMX19_04586at 965.310 kb on + strand, within MPMX19_04586at 965.310 kb on + strand, within MPMX19_04586at 965.310 kb on + strand, within MPMX19_04586at 965.310 kb on + strand, within MPMX19_04586at 965.310 kb on + strand, within MPMX19_04586at 965.310 kb on + strand, within MPMX19_04586at 965.310 kb on + strand, within MPMX19_04586at 965.310 kb on + strand, within MPMX19_04586at 965.311 kb on - strand, within MPMX19_04586at 965.311 kb on - strand, within MPMX19_04586at 965.311 kb on - strand, within MPMX19_04586at 965.311 kb on - strand, within MPMX19_04586at 965.311 kb on - strand, within MPMX19_04586at 965.311 kb on - strand, within MPMX19_04586at 965.400 kb on + strand, within MPMX19_04586at 965.400 kb on + strand, within MPMX19_04586at 965.400 kb on + strand, within MPMX19_04586at 965.400 kb on + strand, within MPMX19_04586at 965.401 kb on - strand, within MPMX19_04586at 965.401 kb on - strand, within MPMX19_04586at 965.505 kb on + strand, within MPMX19_04586at 965.505 kb on + strand, within MPMX19_04586at 965.505 kb on + strand, within MPMX19_04586at 965.505 kb on + strand, within MPMX19_04586at 965.506 kb on - strand, within MPMX19_04586at 965.506 kb on - strand, within MPMX19_04586at 965.506 kb on - strand, within MPMX19_04586at 965.506 kb on - strand, within MPMX19_04586at 965.506 kb on - strand, within MPMX19_04586at 965.506 kb on - strand, within MPMX19_04586at 965.506 kb on - strand, within MPMX19_04586at 965.506 kb on - strand, within MPMX19_04586at 965.506 kb on - strand, within MPMX19_04586at 965.506 kb on - strand, within MPMX19_04586at 965.506 kb on - strand, within MPMX19_04586at 965.796 kb on + strand, within MPMX19_04586at 965.796 kb on + strand, within MPMX19_04586at 965.796 kb on + strand, within MPMX19_04586at 965.796 kb on + strand, within MPMX19_04586at 965.797 kb on - strand, within MPMX19_04586at 965.847 kb on + strand, within MPMX19_04586at 965.847 kb on + strand, within MPMX19_04586at 965.847 kb on + strand, within MPMX19_04586at 965.847 kb on + strand, within MPMX19_04586at 965.847 kb on + strand, within MPMX19_04586at 965.847 kb on + strand, within MPMX19_04586at 965.848 kb on - strand, within MPMX19_04586at 965.848 kb on - strand, within MPMX19_04586at 965.848 kb on - strand, within MPMX19_04586at 965.848 kb on - strand, within MPMX19_04586at 965.848 kb on - strand, within MPMX19_04586at 965.848 kb on - strand, within MPMX19_04586at 965.848 kb on - strand, within MPMX19_04586at 965.848 kb on - strand, within MPMX19_04586at 965.848 kb on - strand, within MPMX19_04586at 965.848 kb on - strand, within MPMX19_04586at 965.848 kb on - strand, within MPMX19_04586at 965.848 kb on - strand, within MPMX19_04586at 965.848 kb on - strand, within MPMX19_04586at 965.848 kb on - strand, within MPMX19_04586at 965.856 kb on + strand, within MPMX19_04586at 965.857 kb on - strand, within MPMX19_04586at 965.857 kb on - strand, within MPMX19_04586at 965.857 kb on - strand, within MPMX19_04586at 965.857 kb on - strand, within MPMX19_04586at 965.857 kb on - strand, within MPMX19_04586at 966.015 kb on + strandat 966.015 kb on + strandat 966.015 kb on + strandat 966.015 kb on + strandat 966.015 kb on + strandat 966.016 kb on - strandat 966.016 kb on - strandat 966.016 kb on - strandat 966.016 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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963,089 + -2.0
963,090 - -1.1
963,468 + MPMX19_04584 0.40 +0.3
963,469 - MPMX19_04584 0.40 -0.1
963,592 - MPMX19_04584 0.57 +0.4
963,630 + MPMX19_04584 0.62 -0.5
963,630 + MPMX19_04584 0.62 +0.2
963,630 + MPMX19_04584 0.62 +0.4
963,825 + MPMX19_04584 0.88 -1.8
963,826 - MPMX19_04584 0.88 -0.1
963,826 - MPMX19_04584 0.88 +0.6
963,826 - MPMX19_04584 0.88 -2.4
963,895 - +0.4
963,895 - -0.4
964,026 + -2.1
964,027 - -1.7
964,027 - +0.9
964,027 - -1.1
964,027 - -1.5
964,027 - -0.7
964,027 - -0.8
964,156 - MPMX19_04585 0.20 -1.2
964,156 - MPMX19_04585 0.20 -1.1
964,197 + MPMX19_04585 0.23 -1.6
964,197 + MPMX19_04585 0.23 -1.4
964,197 + MPMX19_04585 0.23 -0.6
964,198 - MPMX19_04585 0.23 +0.7
964,198 - MPMX19_04585 0.23 +0.6
964,198 - MPMX19_04585 0.23 -0.8
964,413 + MPMX19_04585 0.42 -1.1
964,413 + MPMX19_04585 0.42 -0.3
964,413 + MPMX19_04585 0.42 +0.4
964,413 + MPMX19_04585 0.42 -0.4
964,414 - MPMX19_04585 0.42 -1.8
964,414 - MPMX19_04585 0.42 -0.5
964,414 - MPMX19_04585 0.42 +0.6
964,414 - MPMX19_04585 0.42 -0.1
964,414 - MPMX19_04585 0.42 -0.6
964,414 - MPMX19_04585 0.42 -1.3
964,414 - MPMX19_04585 0.42 -0.5
964,414 - MPMX19_04585 0.42 -0.6
964,461 + MPMX19_04585 0.46 -0.8
964,461 + MPMX19_04585 0.46 -0.6
964,461 + MPMX19_04585 0.46 +0.0
964,461 + MPMX19_04585 0.46 +2.2
964,461 + MPMX19_04585 0.46 +0.2
964,461 + MPMX19_04585 0.46 +0.0
964,462 - MPMX19_04585 0.46 -1.5
964,462 - MPMX19_04585 0.46 -1.3
964,462 - MPMX19_04585 0.46 -1.1
964,462 - MPMX19_04585 0.46 -0.1
964,462 - MPMX19_04585 0.46 -0.8
964,462 - MPMX19_04585 0.46 -0.6
964,462 - MPMX19_04585 0.46 -0.0
964,462 - MPMX19_04585 0.46 -1.6
964,545 + MPMX19_04585 0.53 +0.6
964,546 - MPMX19_04585 0.53 -1.0
964,546 - MPMX19_04585 0.53 -1.1
964,546 - MPMX19_04585 0.53 -0.8
964,546 - MPMX19_04585 0.53 -1.3
964,612 - MPMX19_04585 0.59 +1.6
964,612 - MPMX19_04585 0.59 -0.1
964,843 - MPMX19_04585 0.79 -0.8
964,932 + MPMX19_04585 0.86 -1.8
964,932 + MPMX19_04585 0.86 +1.3
964,933 - MPMX19_04585 0.86 +0.6
964,933 - MPMX19_04585 0.86 -0.6
964,933 - MPMX19_04585 0.86 -0.8
964,933 - MPMX19_04585 0.86 -0.6
964,941 + MPMX19_04585 0.87 -2.3
964,941 + MPMX19_04585 0.87 +0.3
964,941 + MPMX19_04585 0.87 +0.9
964,941 + MPMX19_04585 0.87 -1.7
964,941 + MPMX19_04585 0.87 -1.6
964,941 + MPMX19_04585 0.87 -1.3
964,941 + MPMX19_04585 0.87 +0.2
965,093 + -1.4
965,093 + -0.5
965,093 + -0.0
965,093 + -0.4
965,093 + -1.7
965,093 + +0.6
965,093 + -1.1
965,094 - -1.6
965,094 - +0.1
965,094 - -1.4
965,094 - -1.6
965,094 - +0.4
965,094 - -0.3
965,094 - -0.8
965,094 - +1.0
965,094 - -0.3
965,094 - +0.4
965,094 - -0.9
965,310 + MPMX19_04586 0.22 -0.6
965,310 + MPMX19_04586 0.22 +0.4
965,310 + MPMX19_04586 0.22 +0.9
965,310 + MPMX19_04586 0.22 +0.2
965,310 + MPMX19_04586 0.22 -1.4
965,310 + MPMX19_04586 0.22 -1.6
965,310 + MPMX19_04586 0.22 +1.6
965,310 + MPMX19_04586 0.22 -1.7
965,310 + MPMX19_04586 0.22 -0.2
965,310 + MPMX19_04586 0.22 -0.0
965,310 + MPMX19_04586 0.22 -1.2
965,311 - MPMX19_04586 0.23 +0.2
965,311 - MPMX19_04586 0.23 -0.4
965,311 - MPMX19_04586 0.23 -1.4
965,311 - MPMX19_04586 0.23 -1.5
965,311 - MPMX19_04586 0.23 +1.6
965,311 - MPMX19_04586 0.23 -0.0
965,400 + MPMX19_04586 0.32 -0.3
965,400 + MPMX19_04586 0.32 +0.7
965,400 + MPMX19_04586 0.32 -0.7
965,400 + MPMX19_04586 0.32 -0.8
965,401 - MPMX19_04586 0.32 +0.0
965,401 - MPMX19_04586 0.32 -0.4
965,505 + MPMX19_04586 0.43 -0.8
965,505 + MPMX19_04586 0.43 +0.6
965,505 + MPMX19_04586 0.43 -0.6
965,505 + MPMX19_04586 0.43 -0.3
965,506 - MPMX19_04586 0.44 -0.8
965,506 - MPMX19_04586 0.44 -0.4
965,506 - MPMX19_04586 0.44 -0.8
965,506 - MPMX19_04586 0.44 +0.2
965,506 - MPMX19_04586 0.44 +0.4
965,506 - MPMX19_04586 0.44 -0.5
965,506 - MPMX19_04586 0.44 -0.8
965,506 - MPMX19_04586 0.44 +0.0
965,506 - MPMX19_04586 0.44 -1.0
965,506 - MPMX19_04586 0.44 -0.4
965,506 - MPMX19_04586 0.44 -1.2
965,796 + MPMX19_04586 0.75 -1.9
965,796 + MPMX19_04586 0.75 +0.9
965,796 + MPMX19_04586 0.75 +0.0
965,796 + MPMX19_04586 0.75 +0.5
965,797 - MPMX19_04586 0.75 +1.9
965,847 + MPMX19_04586 0.80 -0.5
965,847 + MPMX19_04586 0.80 +1.0
965,847 + MPMX19_04586 0.80 -0.6
965,847 + MPMX19_04586 0.80 -0.8
965,847 + MPMX19_04586 0.80 +0.5
965,847 + MPMX19_04586 0.80 +1.2
965,848 - MPMX19_04586 0.80 -1.0
965,848 - MPMX19_04586 0.80 -0.4
965,848 - MPMX19_04586 0.80 -0.8
965,848 - MPMX19_04586 0.80 -0.4
965,848 - MPMX19_04586 0.80 +0.2
965,848 - MPMX19_04586 0.80 -2.4
965,848 - MPMX19_04586 0.80 -1.4
965,848 - MPMX19_04586 0.80 +0.4
965,848 - MPMX19_04586 0.80 +0.3
965,848 - MPMX19_04586 0.80 -1.8
965,848 - MPMX19_04586 0.80 -0.3
965,848 - MPMX19_04586 0.80 -0.1
965,848 - MPMX19_04586 0.80 -1.6
965,848 - MPMX19_04586 0.80 -0.5
965,856 + MPMX19_04586 0.81 +2.2
965,857 - MPMX19_04586 0.81 -0.5
965,857 - MPMX19_04586 0.81 -0.2
965,857 - MPMX19_04586 0.81 +0.5
965,857 - MPMX19_04586 0.81 -0.1
965,857 - MPMX19_04586 0.81 -0.4
966,015 + +0.2
966,015 + -0.6
966,015 + +1.0
966,015 + -0.8
966,015 + -0.3
966,016 - -0.1
966,016 - +0.2
966,016 - -1.5
966,016 - +0.5

Or see this region's nucleotide sequence