Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04582 and MPMX19_04583 are separated by 66 nucleotides MPMX19_04583 and MPMX19_04584 are separated by 46 nucleotides MPMX19_04584 and MPMX19_04585 are separated by 15 nucleotides
MPMX19_04582: MPMX19_04582 - hypothetical protein, at 959,935 to 962,364
_04582
MPMX19_04583: MPMX19_04583 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 962,431 to 963,120
_04583
MPMX19_04584: MPMX19_04584 - Lipopolysaccharide export system ATP-binding protein LptB, at 963,167 to 963,913
_04584
MPMX19_04585: MPMX19_04585 - hypothetical protein, at 963,929 to 965,089
_04585
Position (kb) 963
964 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 962.226 kb on + strand at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.883 kb on - strand, within MPMX19_04583 at 962.883 kb on - strand, within MPMX19_04583 at 962.883 kb on - strand, within MPMX19_04583 at 962.883 kb on - strand, within MPMX19_04583 at 962.883 kb on - strand, within MPMX19_04583 at 962.883 kb on - strand, within MPMX19_04583 at 962.883 kb on - strand, within MPMX19_04583 at 962.909 kb on + strand, within MPMX19_04583 at 962.909 kb on + strand, within MPMX19_04583 at 962.910 kb on - strand, within MPMX19_04583 at 962.910 kb on - strand, within MPMX19_04583 at 962.910 kb on - strand, within MPMX19_04583 at 962.910 kb on - strand, within MPMX19_04583 at 962.910 kb on - strand, within MPMX19_04583 at 962.910 kb on - strand, within MPMX19_04583 at 963.089 kb on + strand at 963.090 kb on - strand at 963.468 kb on + strand, within MPMX19_04584 at 963.469 kb on - strand, within MPMX19_04584 at 963.592 kb on - strand, within MPMX19_04584 at 963.630 kb on + strand, within MPMX19_04584 at 963.630 kb on + strand, within MPMX19_04584 at 963.630 kb on + strand, within MPMX19_04584 at 963.825 kb on + strand, within MPMX19_04584 at 963.826 kb on - strand, within MPMX19_04584 at 963.826 kb on - strand, within MPMX19_04584 at 963.826 kb on - strand, within MPMX19_04584 at 963.895 kb on - strand at 963.895 kb on - strand at 964.026 kb on + strand at 964.027 kb on - strand at 964.027 kb on - strand at 964.027 kb on - strand at 964.027 kb on - strand at 964.027 kb on - strand at 964.027 kb on - strand at 964.156 kb on - strand, within MPMX19_04585 at 964.156 kb on - strand, within MPMX19_04585 at 964.197 kb on + strand, within MPMX19_04585 at 964.197 kb on + strand, within MPMX19_04585 at 964.197 kb on + strand, within MPMX19_04585 at 964.198 kb on - strand, within MPMX19_04585 at 964.198 kb on - strand, within MPMX19_04585 at 964.198 kb on - strand, within MPMX19_04585 at 964.413 kb on + strand, within MPMX19_04585 at 964.413 kb on + strand, within MPMX19_04585 at 964.413 kb on + strand, within MPMX19_04585 at 964.413 kb on + strand, within MPMX19_04585 at 964.414 kb on - strand, within MPMX19_04585 at 964.414 kb on - strand, within MPMX19_04585 at 964.414 kb on - strand, within MPMX19_04585 at 964.414 kb on - strand, within MPMX19_04585 at 964.414 kb on - strand, within MPMX19_04585 at 964.414 kb on - strand, within MPMX19_04585 at 964.414 kb on - strand, within MPMX19_04585 at 964.414 kb on - strand, within MPMX19_04585 at 964.461 kb on + strand, within MPMX19_04585 at 964.461 kb on + strand, within MPMX19_04585 at 964.461 kb on + strand, within MPMX19_04585 at 964.461 kb on + strand, within MPMX19_04585 at 964.461 kb on + strand, within MPMX19_04585 at 964.461 kb on + strand, within MPMX19_04585 at 964.462 kb on - strand, within MPMX19_04585 at 964.462 kb on - strand, within MPMX19_04585 at 964.462 kb on - strand, within MPMX19_04585 at 964.462 kb on - strand, within MPMX19_04585 at 964.462 kb on - strand, within MPMX19_04585 at 964.462 kb on - strand, within MPMX19_04585 at 964.462 kb on - strand, within MPMX19_04585 at 964.462 kb on - strand, within MPMX19_04585 at 964.545 kb on + strand, within MPMX19_04585 at 964.546 kb on - strand, within MPMX19_04585 at 964.546 kb on - strand, within MPMX19_04585 at 964.546 kb on - strand, within MPMX19_04585 at 964.546 kb on - strand, within MPMX19_04585 at 964.612 kb on - strand, within MPMX19_04585 at 964.612 kb on - strand, within MPMX19_04585 at 964.843 kb on - strand, within MPMX19_04585
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 962,226 + -0.1 962,882 + MPMX19_04583 0.65 -0.4 962,882 + MPMX19_04583 0.65 -1.3 962,882 + MPMX19_04583 0.65 +0.1 962,882 + MPMX19_04583 0.65 -0.2 962,882 + MPMX19_04583 0.65 -2.5 962,882 + MPMX19_04583 0.65 -0.6 962,882 + MPMX19_04583 0.65 -0.8 962,882 + MPMX19_04583 0.65 +0.1 962,882 + MPMX19_04583 0.65 +1.6 962,882 + MPMX19_04583 0.65 -1.5 962,882 + MPMX19_04583 0.65 -2.8 962,882 + MPMX19_04583 0.65 -1.1 962,882 + MPMX19_04583 0.65 +0.2 962,883 - MPMX19_04583 0.66 -1.7 962,883 - MPMX19_04583 0.66 +0.2 962,883 - MPMX19_04583 0.66 -0.5 962,883 - MPMX19_04583 0.66 +0.6 962,883 - MPMX19_04583 0.66 -1.6 962,883 - MPMX19_04583 0.66 +0.3 962,883 - MPMX19_04583 0.66 +1.1 962,909 + MPMX19_04583 0.69 -1.3 962,909 + MPMX19_04583 0.69 -1.4 962,910 - MPMX19_04583 0.69 +1.8 962,910 - MPMX19_04583 0.69 +0.2 962,910 - MPMX19_04583 0.69 -0.2 962,910 - MPMX19_04583 0.69 -2.1 962,910 - MPMX19_04583 0.69 -0.4 962,910 - MPMX19_04583 0.69 -0.0 963,089 + -2.0 963,090 - -1.1 963,468 + MPMX19_04584 0.40 +0.3 963,469 - MPMX19_04584 0.40 -0.1 963,592 - MPMX19_04584 0.57 +0.4 963,630 + MPMX19_04584 0.62 -0.5 963,630 + MPMX19_04584 0.62 +0.2 963,630 + MPMX19_04584 0.62 +0.4 963,825 + MPMX19_04584 0.88 -1.8 963,826 - MPMX19_04584 0.88 -0.1 963,826 - MPMX19_04584 0.88 +0.6 963,826 - MPMX19_04584 0.88 -2.4 963,895 - +0.4 963,895 - -0.4 964,026 + -2.1 964,027 - -1.7 964,027 - +0.9 964,027 - -1.1 964,027 - -1.5 964,027 - -0.7 964,027 - -0.8 964,156 - MPMX19_04585 0.20 -1.2 964,156 - MPMX19_04585 0.20 -1.1 964,197 + MPMX19_04585 0.23 -1.6 964,197 + MPMX19_04585 0.23 -1.4 964,197 + MPMX19_04585 0.23 -0.6 964,198 - MPMX19_04585 0.23 +0.7 964,198 - MPMX19_04585 0.23 +0.6 964,198 - MPMX19_04585 0.23 -0.8 964,413 + MPMX19_04585 0.42 -1.1 964,413 + MPMX19_04585 0.42 -0.3 964,413 + MPMX19_04585 0.42 +0.4 964,413 + MPMX19_04585 0.42 -0.4 964,414 - MPMX19_04585 0.42 -1.8 964,414 - MPMX19_04585 0.42 -0.5 964,414 - MPMX19_04585 0.42 +0.6 964,414 - MPMX19_04585 0.42 -0.1 964,414 - MPMX19_04585 0.42 -0.6 964,414 - MPMX19_04585 0.42 -1.3 964,414 - MPMX19_04585 0.42 -0.5 964,414 - MPMX19_04585 0.42 -0.6 964,461 + MPMX19_04585 0.46 -0.8 964,461 + MPMX19_04585 0.46 -0.6 964,461 + MPMX19_04585 0.46 +0.0 964,461 + MPMX19_04585 0.46 +2.2 964,461 + MPMX19_04585 0.46 +0.2 964,461 + MPMX19_04585 0.46 +0.0 964,462 - MPMX19_04585 0.46 -1.5 964,462 - MPMX19_04585 0.46 -1.3 964,462 - MPMX19_04585 0.46 -1.1 964,462 - MPMX19_04585 0.46 -0.1 964,462 - MPMX19_04585 0.46 -0.8 964,462 - MPMX19_04585 0.46 -0.6 964,462 - MPMX19_04585 0.46 -0.0 964,462 - MPMX19_04585 0.46 -1.6 964,545 + MPMX19_04585 0.53 +0.6 964,546 - MPMX19_04585 0.53 -1.0 964,546 - MPMX19_04585 0.53 -1.1 964,546 - MPMX19_04585 0.53 -0.8 964,546 - MPMX19_04585 0.53 -1.3 964,612 - MPMX19_04585 0.59 +1.6 964,612 - MPMX19_04585 0.59 -0.1 964,843 - MPMX19_04585 0.79 -0.8
Or see this region's nucleotide sequence