Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04582

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04581 and MPMX19_04582 are separated by 68 nucleotidesMPMX19_04582 and MPMX19_04583 are separated by 66 nucleotidesMPMX19_04583 and MPMX19_04584 are separated by 46 nucleotides MPMX19_04581: MPMX19_04581 - Formamidase, at 958,634 to 959,866 _04581 MPMX19_04582: MPMX19_04582 - hypothetical protein, at 959,935 to 962,364 _04582 MPMX19_04583: MPMX19_04583 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 962,431 to 963,120 _04583 MPMX19_04584: MPMX19_04584 - Lipopolysaccharide export system ATP-binding protein LptB, at 963,167 to 963,913 _04584 Position (kb) 959 960 961 962 963Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 958.953 kb on + strand, within MPMX19_04581at 958.953 kb on + strand, within MPMX19_04581at 958.953 kb on + strand, within MPMX19_04581at 958.953 kb on + strand, within MPMX19_04581at 958.954 kb on - strand, within MPMX19_04581at 958.954 kb on - strand, within MPMX19_04581at 958.954 kb on - strand, within MPMX19_04581at 958.954 kb on - strand, within MPMX19_04581at 958.962 kb on + strand, within MPMX19_04581at 958.963 kb on - strand, within MPMX19_04581at 958.963 kb on - strand, within MPMX19_04581at 958.963 kb on - strand, within MPMX19_04581at 958.963 kb on - strand, within MPMX19_04581at 958.963 kb on - strand, within MPMX19_04581at 959.010 kb on + strand, within MPMX19_04581at 959.011 kb on - strand, within MPMX19_04581at 959.011 kb on - strand, within MPMX19_04581at 959.148 kb on + strand, within MPMX19_04581at 959.148 kb on + strand, within MPMX19_04581at 959.148 kb on + strand, within MPMX19_04581at 959.148 kb on + strand, within MPMX19_04581at 959.148 kb on + strand, within MPMX19_04581at 959.148 kb on + strand, within MPMX19_04581at 959.148 kb on + strand, within MPMX19_04581at 959.148 kb on + strand, within MPMX19_04581at 959.148 kb on + strand, within MPMX19_04581at 959.148 kb on + strand, within MPMX19_04581at 959.148 kb on + strand, within MPMX19_04581at 959.149 kb on - strand, within MPMX19_04581at 959.149 kb on - strand, within MPMX19_04581at 959.149 kb on - strand, within MPMX19_04581at 959.149 kb on - strand, within MPMX19_04581at 959.149 kb on - strand, within MPMX19_04581at 959.149 kb on - strand, within MPMX19_04581at 959.149 kb on - strand, within MPMX19_04581at 959.160 kb on + strand, within MPMX19_04581at 959.160 kb on + strand, within MPMX19_04581at 959.160 kb on + strand, within MPMX19_04581at 959.160 kb on + strand, within MPMX19_04581at 959.160 kb on + strand, within MPMX19_04581at 959.160 kb on + strand, within MPMX19_04581at 959.161 kb on - strand, within MPMX19_04581at 959.161 kb on - strand, within MPMX19_04581at 959.161 kb on - strand, within MPMX19_04581at 959.161 kb on - strand, within MPMX19_04581at 959.299 kb on - strand, within MPMX19_04581at 959.733 kb on + strand, within MPMX19_04581at 959.733 kb on + strand, within MPMX19_04581at 959.733 kb on + strand, within MPMX19_04581at 959.733 kb on + strand, within MPMX19_04581at 959.734 kb on - strand, within MPMX19_04581at 960.296 kb on + strand, within MPMX19_04582at 960.422 kb on + strand, within MPMX19_04582at 960.422 kb on + strand, within MPMX19_04582at 960.422 kb on + strand, within MPMX19_04582at 960.423 kb on - strand, within MPMX19_04582at 960.423 kb on - strand, within MPMX19_04582at 960.423 kb on - strand, within MPMX19_04582at 960.423 kb on - strand, within MPMX19_04582at 960.458 kb on + strand, within MPMX19_04582at 960.458 kb on + strand, within MPMX19_04582at 960.458 kb on + strand, within MPMX19_04582at 960.458 kb on + strand, within MPMX19_04582at 960.530 kb on + strand, within MPMX19_04582at 960.530 kb on + strand, within MPMX19_04582at 960.531 kb on - strand, within MPMX19_04582at 960.531 kb on - strand, within MPMX19_04582at 960.531 kb on - strand, within MPMX19_04582at 960.606 kb on + strand, within MPMX19_04582at 960.606 kb on + strand, within MPMX19_04582at 960.606 kb on + strand, within MPMX19_04582at 960.606 kb on + strand, within MPMX19_04582at 960.606 kb on + strand, within MPMX19_04582at 960.606 kb on + strand, within MPMX19_04582at 960.606 kb on + strand, within MPMX19_04582at 960.606 kb on + strand, within MPMX19_04582at 960.607 kb on - strand, within MPMX19_04582at 960.607 kb on - strand, within MPMX19_04582at 960.607 kb on - strand, within MPMX19_04582at 960.607 kb on - strand, within MPMX19_04582at 960.607 kb on - strand, within MPMX19_04582at 960.607 kb on - strand, within MPMX19_04582at 960.607 kb on - strand, within MPMX19_04582at 960.607 kb on - strand, within MPMX19_04582at 960.608 kb on + strand, within MPMX19_04582at 960.608 kb on + strand, within MPMX19_04582at 960.608 kb on + strand, within MPMX19_04582at 960.608 kb on + strand, within MPMX19_04582at 960.608 kb on + strand, within MPMX19_04582at 960.609 kb on - strand, within MPMX19_04582at 960.609 kb on - strand, within MPMX19_04582at 960.609 kb on - strand, within MPMX19_04582at 960.609 kb on - strand, within MPMX19_04582at 960.609 kb on - strand, within MPMX19_04582at 960.704 kb on + strand, within MPMX19_04582at 960.704 kb on + strand, within MPMX19_04582at 960.704 kb on + strand, within MPMX19_04582at 960.704 kb on + strand, within MPMX19_04582at 960.704 kb on + strand, within MPMX19_04582at 960.704 kb on + strand, within MPMX19_04582at 960.705 kb on - strand, within MPMX19_04582at 960.705 kb on - strand, within MPMX19_04582at 960.705 kb on - strand, within MPMX19_04582at 960.705 kb on - strand, within MPMX19_04582at 960.705 kb on - strand, within MPMX19_04582at 960.705 kb on - strand, within MPMX19_04582at 960.705 kb on - strand, within MPMX19_04582at 960.705 kb on - strand, within MPMX19_04582at 960.705 kb on - strand, within MPMX19_04582at 960.737 kb on + strand, within MPMX19_04582at 960.737 kb on + strand, within MPMX19_04582at 960.737 kb on + strand, within MPMX19_04582at 960.737 kb on + strand, within MPMX19_04582at 960.737 kb on + strand, within MPMX19_04582at 960.738 kb on - strand, within MPMX19_04582at 960.738 kb on - strand, within MPMX19_04582at 960.738 kb on - strand, within MPMX19_04582at 960.749 kb on + strand, within MPMX19_04582at 960.750 kb on - strand, within MPMX19_04582at 960.750 kb on - strand, within MPMX19_04582at 960.750 kb on - strand, within MPMX19_04582at 960.752 kb on + strand, within MPMX19_04582at 960.752 kb on + strand, within MPMX19_04582at 960.752 kb on + strand, within MPMX19_04582at 960.753 kb on - strand, within MPMX19_04582at 960.753 kb on - strand, within MPMX19_04582at 960.753 kb on - strand, within MPMX19_04582at 960.753 kb on - strand, within MPMX19_04582at 960.753 kb on - strand, within MPMX19_04582at 960.753 kb on - strand, within MPMX19_04582at 962.226 kb on + strandat 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.909 kb on + strand, within MPMX19_04583at 962.909 kb on + strand, within MPMX19_04583at 962.910 kb on - strand, within MPMX19_04583at 962.910 kb on - strand, within MPMX19_04583at 962.910 kb on - strand, within MPMX19_04583at 962.910 kb on - strand, within MPMX19_04583at 962.910 kb on - strand, within MPMX19_04583at 962.910 kb on - strand, within MPMX19_04583at 963.089 kb on + strandat 963.090 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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958,953 + MPMX19_04581 0.26 -1.1
958,953 + MPMX19_04581 0.26 +0.4
958,953 + MPMX19_04581 0.26 -0.4
958,953 + MPMX19_04581 0.26 -0.4
958,954 - MPMX19_04581 0.26 -0.3
958,954 - MPMX19_04581 0.26 -0.3
958,954 - MPMX19_04581 0.26 -1.1
958,954 - MPMX19_04581 0.26 -0.4
958,962 + MPMX19_04581 0.27 -0.5
958,963 - MPMX19_04581 0.27 -1.5
958,963 - MPMX19_04581 0.27 +1.2
958,963 - MPMX19_04581 0.27 -1.1
958,963 - MPMX19_04581 0.27 -0.3
958,963 - MPMX19_04581 0.27 -0.0
959,010 + MPMX19_04581 0.30 -0.1
959,011 - MPMX19_04581 0.31 -0.8
959,011 - MPMX19_04581 0.31 -0.1
959,148 + MPMX19_04581 0.42 +0.2
959,148 + MPMX19_04581 0.42 +0.4
959,148 + MPMX19_04581 0.42 -0.5
959,148 + MPMX19_04581 0.42 +1.7
959,148 + MPMX19_04581 0.42 -2.4
959,148 + MPMX19_04581 0.42 +0.8
959,148 + MPMX19_04581 0.42 +0.2
959,148 + MPMX19_04581 0.42 -0.6
959,148 + MPMX19_04581 0.42 +0.5
959,148 + MPMX19_04581 0.42 -0.7
959,148 + MPMX19_04581 0.42 -0.8
959,149 - MPMX19_04581 0.42 -1.1
959,149 - MPMX19_04581 0.42 -0.0
959,149 - MPMX19_04581 0.42 -0.6
959,149 - MPMX19_04581 0.42 +0.4
959,149 - MPMX19_04581 0.42 +0.6
959,149 - MPMX19_04581 0.42 +0.5
959,149 - MPMX19_04581 0.42 +0.7
959,160 + MPMX19_04581 0.43 -0.4
959,160 + MPMX19_04581 0.43 +0.4
959,160 + MPMX19_04581 0.43 -0.1
959,160 + MPMX19_04581 0.43 +0.4
959,160 + MPMX19_04581 0.43 -1.0
959,160 + MPMX19_04581 0.43 +1.4
959,161 - MPMX19_04581 0.43 -1.3
959,161 - MPMX19_04581 0.43 -0.2
959,161 - MPMX19_04581 0.43 -0.3
959,161 - MPMX19_04581 0.43 -1.5
959,299 - MPMX19_04581 0.54 +0.4
959,733 + MPMX19_04581 0.89 -0.3
959,733 + MPMX19_04581 0.89 -0.7
959,733 + MPMX19_04581 0.89 -0.8
959,733 + MPMX19_04581 0.89 +1.2
959,734 - MPMX19_04581 0.89 -1.0
960,296 + MPMX19_04582 0.15 +0.8
960,422 + MPMX19_04582 0.20 -0.4
960,422 + MPMX19_04582 0.20 -0.4
960,422 + MPMX19_04582 0.20 -0.6
960,423 - MPMX19_04582 0.20 +0.3
960,423 - MPMX19_04582 0.20 -0.3
960,423 - MPMX19_04582 0.20 -1.6
960,423 - MPMX19_04582 0.20 -0.9
960,458 + MPMX19_04582 0.22 -2.0
960,458 + MPMX19_04582 0.22 -0.2
960,458 + MPMX19_04582 0.22 -1.0
960,458 + MPMX19_04582 0.22 -0.8
960,530 + MPMX19_04582 0.24 -0.1
960,530 + MPMX19_04582 0.24 -1.1
960,531 - MPMX19_04582 0.25 -0.4
960,531 - MPMX19_04582 0.25 +0.9
960,531 - MPMX19_04582 0.25 +0.3
960,606 + MPMX19_04582 0.28 -0.9
960,606 + MPMX19_04582 0.28 -0.7
960,606 + MPMX19_04582 0.28 -2.2
960,606 + MPMX19_04582 0.28 +1.6
960,606 + MPMX19_04582 0.28 -0.1
960,606 + MPMX19_04582 0.28 -1.0
960,606 + MPMX19_04582 0.28 +0.0
960,606 + MPMX19_04582 0.28 -0.3
960,607 - MPMX19_04582 0.28 -1.1
960,607 - MPMX19_04582 0.28 +0.4
960,607 - MPMX19_04582 0.28 -1.2
960,607 - MPMX19_04582 0.28 -0.8
960,607 - MPMX19_04582 0.28 -0.6
960,607 - MPMX19_04582 0.28 +0.7
960,607 - MPMX19_04582 0.28 +0.6
960,607 - MPMX19_04582 0.28 +2.2
960,608 + MPMX19_04582 0.28 -3.1
960,608 + MPMX19_04582 0.28 +0.2
960,608 + MPMX19_04582 0.28 +0.6
960,608 + MPMX19_04582 0.28 -0.3
960,608 + MPMX19_04582 0.28 -0.6
960,609 - MPMX19_04582 0.28 -0.6
960,609 - MPMX19_04582 0.28 -0.5
960,609 - MPMX19_04582 0.28 -0.7
960,609 - MPMX19_04582 0.28 -0.2
960,609 - MPMX19_04582 0.28 -1.6
960,704 + MPMX19_04582 0.32 -1.1
960,704 + MPMX19_04582 0.32 +0.2
960,704 + MPMX19_04582 0.32 -1.6
960,704 + MPMX19_04582 0.32 -0.8
960,704 + MPMX19_04582 0.32 -0.5
960,704 + MPMX19_04582 0.32 -0.1
960,705 - MPMX19_04582 0.32 +0.0
960,705 - MPMX19_04582 0.32 -0.1
960,705 - MPMX19_04582 0.32 -0.5
960,705 - MPMX19_04582 0.32 -1.9
960,705 - MPMX19_04582 0.32 -0.5
960,705 - MPMX19_04582 0.32 +0.3
960,705 - MPMX19_04582 0.32 -0.5
960,705 - MPMX19_04582 0.32 +0.0
960,705 - MPMX19_04582 0.32 -0.5
960,737 + MPMX19_04582 0.33 -2.5
960,737 + MPMX19_04582 0.33 +1.6
960,737 + MPMX19_04582 0.33 +0.8
960,737 + MPMX19_04582 0.33 +0.1
960,737 + MPMX19_04582 0.33 +0.5
960,738 - MPMX19_04582 0.33 +0.6
960,738 - MPMX19_04582 0.33 -0.8
960,738 - MPMX19_04582 0.33 -0.4
960,749 + MPMX19_04582 0.33 -0.9
960,750 - MPMX19_04582 0.34 -1.5
960,750 - MPMX19_04582 0.34 -0.6
960,750 - MPMX19_04582 0.34 +1.2
960,752 + MPMX19_04582 0.34 -2.0
960,752 + MPMX19_04582 0.34 -0.6
960,752 + MPMX19_04582 0.34 -1.5
960,753 - MPMX19_04582 0.34 -0.9
960,753 - MPMX19_04582 0.34 -0.1
960,753 - MPMX19_04582 0.34 -1.5
960,753 - MPMX19_04582 0.34 -1.1
960,753 - MPMX19_04582 0.34 +0.2
960,753 - MPMX19_04582 0.34 -0.8
962,226 + -0.1
962,882 + MPMX19_04583 0.65 -0.4
962,882 + MPMX19_04583 0.65 -1.3
962,882 + MPMX19_04583 0.65 +0.1
962,882 + MPMX19_04583 0.65 -0.2
962,882 + MPMX19_04583 0.65 -2.5
962,882 + MPMX19_04583 0.65 -0.6
962,882 + MPMX19_04583 0.65 -0.8
962,882 + MPMX19_04583 0.65 +0.1
962,882 + MPMX19_04583 0.65 +1.6
962,882 + MPMX19_04583 0.65 -1.5
962,882 + MPMX19_04583 0.65 -2.8
962,882 + MPMX19_04583 0.65 -1.1
962,882 + MPMX19_04583 0.65 +0.2
962,883 - MPMX19_04583 0.66 -1.7
962,883 - MPMX19_04583 0.66 +0.2
962,883 - MPMX19_04583 0.66 -0.5
962,883 - MPMX19_04583 0.66 +0.6
962,883 - MPMX19_04583 0.66 -1.6
962,883 - MPMX19_04583 0.66 +0.3
962,883 - MPMX19_04583 0.66 +1.1
962,909 + MPMX19_04583 0.69 -1.3
962,909 + MPMX19_04583 0.69 -1.4
962,910 - MPMX19_04583 0.69 +1.8
962,910 - MPMX19_04583 0.69 +0.2
962,910 - MPMX19_04583 0.69 -0.2
962,910 - MPMX19_04583 0.69 -2.1
962,910 - MPMX19_04583 0.69 -0.4
962,910 - MPMX19_04583 0.69 -0.0
963,089 + -2.0
963,090 - -1.1

Or see this region's nucleotide sequence