Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04578

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04576 and MPMX19_04577 overlap by 4 nucleotidesMPMX19_04577 and MPMX19_04578 are separated by 4 nucleotidesMPMX19_04578 and MPMX19_04579 overlap by 4 nucleotidesMPMX19_04579 and MPMX19_04580 are separated by 177 nucleotidesMPMX19_04580 and MPMX19_04581 are separated by 22 nucleotides MPMX19_04576: MPMX19_04576 - hypothetical protein, at 955,157 to 955,873 _04576 MPMX19_04577: MPMX19_04577 - putative glycosyltransferase, at 955,870 to 956,649 _04577 MPMX19_04578: MPMX19_04578 - dTDP-L-rhamnose 4-epimerase, at 956,654 to 957,721 _04578 MPMX19_04579: MPMX19_04579 - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 957,718 to 958,086 _04579 MPMX19_04580: MPMX19_04580 - hypothetical protein, at 958,264 to 958,611 _04580 MPMX19_04581: MPMX19_04581 - Formamidase, at 958,634 to 959,866 _04581 Position (kb) 956 957 958Strain fitness (log2 ratio) -2 -1 0 1 2at 955.661 kb on + strand, within MPMX19_04576at 955.661 kb on + strand, within MPMX19_04576at 955.724 kb on + strand, within MPMX19_04576at 955.724 kb on + strand, within MPMX19_04576at 955.724 kb on + strand, within MPMX19_04576at 955.724 kb on + strand, within MPMX19_04576at 955.725 kb on - strand, within MPMX19_04576at 955.725 kb on - strand, within MPMX19_04576at 955.725 kb on - strand, within MPMX19_04576at 955.748 kb on + strand, within MPMX19_04576at 955.748 kb on + strand, within MPMX19_04576at 955.748 kb on + strand, within MPMX19_04576at 955.749 kb on - strand, within MPMX19_04576at 955.749 kb on - strand, within MPMX19_04576at 955.749 kb on - strand, within MPMX19_04576at 955.749 kb on - strand, within MPMX19_04576at 956.311 kb on + strand, within MPMX19_04577at 956.312 kb on - strand, within MPMX19_04577at 956.312 kb on - strand, within MPMX19_04577at 956.312 kb on - strand, within MPMX19_04577at 956.312 kb on - strand, within MPMX19_04577at 956.395 kb on + strand, within MPMX19_04577at 956.395 kb on + strand, within MPMX19_04577at 956.396 kb on - strand, within MPMX19_04577at 956.396 kb on - strand, within MPMX19_04577at 956.396 kb on - strand, within MPMX19_04577at 956.647 kb on + strandat 956.647 kb on + strandat 956.648 kb on - strandat 956.648 kb on - strandat 956.927 kb on + strand, within MPMX19_04578at 956.927 kb on + strand, within MPMX19_04578at 956.927 kb on + strand, within MPMX19_04578at 956.927 kb on + strand, within MPMX19_04578at 956.928 kb on - strand, within MPMX19_04578at 956.928 kb on - strand, within MPMX19_04578at 956.988 kb on + strand, within MPMX19_04578at 956.988 kb on + strand, within MPMX19_04578at 956.988 kb on + strand, within MPMX19_04578at 957.023 kb on + strand, within MPMX19_04578at 957.023 kb on + strand, within MPMX19_04578at 957.023 kb on + strand, within MPMX19_04578at 957.023 kb on + strand, within MPMX19_04578at 957.023 kb on + strand, within MPMX19_04578at 957.023 kb on + strand, within MPMX19_04578at 957.024 kb on - strand, within MPMX19_04578at 957.024 kb on - strand, within MPMX19_04578at 957.024 kb on - strand, within MPMX19_04578at 957.191 kb on + strand, within MPMX19_04578at 957.191 kb on + strand, within MPMX19_04578at 957.192 kb on - strand, within MPMX19_04578at 957.254 kb on - strand, within MPMX19_04578at 957.273 kb on - strand, within MPMX19_04578at 957.284 kb on + strand, within MPMX19_04578at 957.314 kb on + strand, within MPMX19_04578at 957.473 kb on + strand, within MPMX19_04578at 957.473 kb on + strand, within MPMX19_04578at 957.473 kb on + strand, within MPMX19_04578at 957.473 kb on + strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.731 kb on + strandat 957.731 kb on + strandat 957.731 kb on + strandat 957.731 kb on + strandat 957.731 kb on + strandat 957.732 kb on - strandat 957.732 kb on - strandat 957.732 kb on - strandat 957.732 kb on - strandat 957.783 kb on + strand, within MPMX19_04579at 957.784 kb on - strand, within MPMX19_04579at 957.784 kb on - strand, within MPMX19_04579at 957.784 kb on - strand, within MPMX19_04579at 957.784 kb on - strand, within MPMX19_04579at 957.818 kb on + strand, within MPMX19_04579at 957.818 kb on + strand, within MPMX19_04579at 957.819 kb on - strand, within MPMX19_04579at 957.852 kb on + strand, within MPMX19_04579at 957.853 kb on - strand, within MPMX19_04579at 957.892 kb on + strand, within MPMX19_04579at 957.892 kb on + strand, within MPMX19_04579at 957.893 kb on - strand, within MPMX19_04579at 958.070 kb on + strandat 958.070 kb on + strandat 958.071 kb on - strandat 958.071 kb on - strandat 958.071 kb on - strandat 958.071 kb on - strandat 958.071 kb on - strandat 958.071 kb on - strandat 958.320 kb on + strand, within MPMX19_04580at 958.320 kb on + strand, within MPMX19_04580at 958.320 kb on + strand, within MPMX19_04580at 958.320 kb on + strand, within MPMX19_04580at 958.320 kb on + strand, within MPMX19_04580at 958.320 kb on + strand, within MPMX19_04580at 958.320 kb on + strand, within MPMX19_04580at 958.320 kb on + strand, within MPMX19_04580at 958.320 kb on + strand, within MPMX19_04580at 958.321 kb on - strand, within MPMX19_04580at 958.321 kb on - strand, within MPMX19_04580at 958.321 kb on - strand, within MPMX19_04580at 958.321 kb on - strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.380 kb on + strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.381 kb on - strand, within MPMX19_04580at 958.386 kb on + strand, within MPMX19_04580at 958.386 kb on + strand, within MPMX19_04580at 958.386 kb on + strand, within MPMX19_04580at 958.386 kb on + strand, within MPMX19_04580at 958.386 kb on + strand, within MPMX19_04580at 958.386 kb on + strand, within MPMX19_04580at 958.386 kb on + strand, within MPMX19_04580at 958.386 kb on + strand, within MPMX19_04580at 958.387 kb on - strand, within MPMX19_04580at 958.387 kb on - strand, within MPMX19_04580at 958.387 kb on - strand, within MPMX19_04580at 958.387 kb on - strand, within MPMX19_04580at 958.387 kb on - strand, within MPMX19_04580at 958.595 kb on + strandat 958.595 kb on + strandat 958.595 kb on + strandat 958.595 kb on + strandat 958.595 kb on + strandat 958.596 kb on - strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.601 kb on + strandat 958.602 kb on - strandat 958.602 kb on - strandat 958.602 kb on - strandat 958.602 kb on - strandat 958.602 kb on - strandat 958.602 kb on - strandat 958.602 kb on - strandat 958.635 kb on + strandat 958.635 kb on + strandat 958.635 kb on + strandat 958.635 kb on + strandat 958.636 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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955,661 + MPMX19_04576 0.70 -0.8
955,661 + MPMX19_04576 0.70 -0.2
955,724 + MPMX19_04576 0.79 -0.0
955,724 + MPMX19_04576 0.79 -0.8
955,724 + MPMX19_04576 0.79 -1.1
955,724 + MPMX19_04576 0.79 -0.1
955,725 - MPMX19_04576 0.79 -0.4
955,725 - MPMX19_04576 0.79 -1.3
955,725 - MPMX19_04576 0.79 -1.2
955,748 + MPMX19_04576 0.82 -0.2
955,748 + MPMX19_04576 0.82 -0.1
955,748 + MPMX19_04576 0.82 -1.0
955,749 - MPMX19_04576 0.83 +1.0
955,749 - MPMX19_04576 0.83 -0.8
955,749 - MPMX19_04576 0.83 -0.5
955,749 - MPMX19_04576 0.83 +0.8
956,311 + MPMX19_04577 0.57 -0.6
956,312 - MPMX19_04577 0.57 -0.0
956,312 - MPMX19_04577 0.57 -0.5
956,312 - MPMX19_04577 0.57 -1.2
956,312 - MPMX19_04577 0.57 -1.0
956,395 + MPMX19_04577 0.67 -0.0
956,395 + MPMX19_04577 0.67 -0.1
956,396 - MPMX19_04577 0.67 +0.4
956,396 - MPMX19_04577 0.67 -0.1
956,396 - MPMX19_04577 0.67 -0.4
956,647 + -2.5
956,647 + +1.0
956,648 - -1.5
956,648 - -1.3
956,927 + MPMX19_04578 0.26 +0.3
956,927 + MPMX19_04578 0.26 +1.0
956,927 + MPMX19_04578 0.26 -0.8
956,927 + MPMX19_04578 0.26 -0.4
956,928 - MPMX19_04578 0.26 -1.8
956,928 - MPMX19_04578 0.26 -1.3
956,988 + MPMX19_04578 0.31 -0.9
956,988 + MPMX19_04578 0.31 +1.0
956,988 + MPMX19_04578 0.31 -0.8
957,023 + MPMX19_04578 0.35 -0.1
957,023 + MPMX19_04578 0.35 -0.9
957,023 + MPMX19_04578 0.35 -0.4
957,023 + MPMX19_04578 0.35 -0.0
957,023 + MPMX19_04578 0.35 -0.3
957,023 + MPMX19_04578 0.35 -0.6
957,024 - MPMX19_04578 0.35 -0.4
957,024 - MPMX19_04578 0.35 +1.2
957,024 - MPMX19_04578 0.35 -0.4
957,191 + MPMX19_04578 0.50 +2.2
957,191 + MPMX19_04578 0.50 -0.2
957,192 - MPMX19_04578 0.50 -0.4
957,254 - MPMX19_04578 0.56 -1.4
957,273 - MPMX19_04578 0.58 -0.5
957,284 + MPMX19_04578 0.59 -0.9
957,314 + MPMX19_04578 0.62 -0.1
957,473 + MPMX19_04578 0.77 +0.5
957,473 + MPMX19_04578 0.77 -1.1
957,473 + MPMX19_04578 0.77 -0.3
957,473 + MPMX19_04578 0.77 +0.0
957,474 - MPMX19_04578 0.77 -0.4
957,474 - MPMX19_04578 0.77 -0.5
957,474 - MPMX19_04578 0.77 -1.7
957,474 - MPMX19_04578 0.77 +0.3
957,474 - MPMX19_04578 0.77 -1.1
957,474 - MPMX19_04578 0.77 -1.8
957,474 - MPMX19_04578 0.77 +0.2
957,731 + -1.4
957,731 + -0.1
957,731 + -0.2
957,731 + -1.7
957,731 + +0.7
957,732 - -1.0
957,732 - -2.6
957,732 - +0.0
957,732 - +0.8
957,783 + MPMX19_04579 0.18 -0.6
957,784 - MPMX19_04579 0.18 -0.1
957,784 - MPMX19_04579 0.18 -1.3
957,784 - MPMX19_04579 0.18 -0.7
957,784 - MPMX19_04579 0.18 -2.5
957,818 + MPMX19_04579 0.27 +0.0
957,818 + MPMX19_04579 0.27 +0.6
957,819 - MPMX19_04579 0.27 -0.1
957,852 + MPMX19_04579 0.36 +0.9
957,853 - MPMX19_04579 0.37 -1.1
957,892 + MPMX19_04579 0.47 +0.2
957,892 + MPMX19_04579 0.47 +0.7
957,893 - MPMX19_04579 0.47 -1.1
958,070 + -2.1
958,070 + +1.5
958,071 - +0.2
958,071 - -1.7
958,071 - -0.4
958,071 - -0.8
958,071 - +0.6
958,071 - -2.0
958,320 + MPMX19_04580 0.16 -0.0
958,320 + MPMX19_04580 0.16 +0.6
958,320 + MPMX19_04580 0.16 -0.8
958,320 + MPMX19_04580 0.16 -0.3
958,320 + MPMX19_04580 0.16 -1.4
958,320 + MPMX19_04580 0.16 +1.5
958,320 + MPMX19_04580 0.16 -0.7
958,320 + MPMX19_04580 0.16 -0.6
958,320 + MPMX19_04580 0.16 -1.2
958,321 - MPMX19_04580 0.16 +0.9
958,321 - MPMX19_04580 0.16 +0.4
958,321 - MPMX19_04580 0.16 -1.5
958,321 - MPMX19_04580 0.16 -0.8
958,380 + MPMX19_04580 0.33 -1.0
958,380 + MPMX19_04580 0.33 +0.6
958,380 + MPMX19_04580 0.33 -0.9
958,380 + MPMX19_04580 0.33 +0.0
958,380 + MPMX19_04580 0.33 -0.1
958,380 + MPMX19_04580 0.33 -1.1
958,380 + MPMX19_04580 0.33 -0.7
958,380 + MPMX19_04580 0.33 +0.9
958,380 + MPMX19_04580 0.33 -0.9
958,380 + MPMX19_04580 0.33 +1.2
958,380 + MPMX19_04580 0.33 -0.9
958,380 + MPMX19_04580 0.33 +0.4
958,380 + MPMX19_04580 0.33 +0.6
958,380 + MPMX19_04580 0.33 +0.9
958,380 + MPMX19_04580 0.33 +2.2
958,380 + MPMX19_04580 0.33 -0.1
958,380 + MPMX19_04580 0.33 +0.2
958,380 + MPMX19_04580 0.33 -0.2
958,380 + MPMX19_04580 0.33 -0.9
958,380 + MPMX19_04580 0.33 -1.8
958,381 - MPMX19_04580 0.34 -0.8
958,381 - MPMX19_04580 0.34 +0.4
958,381 - MPMX19_04580 0.34 -0.6
958,381 - MPMX19_04580 0.34 -0.6
958,381 - MPMX19_04580 0.34 -1.1
958,381 - MPMX19_04580 0.34 -1.1
958,381 - MPMX19_04580 0.34 -0.9
958,381 - MPMX19_04580 0.34 -2.1
958,381 - MPMX19_04580 0.34 -0.8
958,381 - MPMX19_04580 0.34 +0.4
958,381 - MPMX19_04580 0.34 -0.6
958,381 - MPMX19_04580 0.34 +0.8
958,381 - MPMX19_04580 0.34 +1.8
958,381 - MPMX19_04580 0.34 -1.5
958,381 - MPMX19_04580 0.34 -1.5
958,381 - MPMX19_04580 0.34 +0.2
958,386 + MPMX19_04580 0.35 -0.6
958,386 + MPMX19_04580 0.35 -0.9
958,386 + MPMX19_04580 0.35 -1.7
958,386 + MPMX19_04580 0.35 +0.1
958,386 + MPMX19_04580 0.35 -2.6
958,386 + MPMX19_04580 0.35 +0.2
958,386 + MPMX19_04580 0.35 -0.4
958,386 + MPMX19_04580 0.35 -1.4
958,387 - MPMX19_04580 0.35 -0.5
958,387 - MPMX19_04580 0.35 +0.7
958,387 - MPMX19_04580 0.35 -0.1
958,387 - MPMX19_04580 0.35 -1.1
958,387 - MPMX19_04580 0.35 -0.7
958,595 + -0.1
958,595 + -1.6
958,595 + -0.4
958,595 + -0.1
958,595 + -1.1
958,596 - +1.5
958,601 + -1.6
958,601 + -0.4
958,601 + -0.8
958,601 + -0.4
958,601 + +0.8
958,601 + +1.0
958,601 + -0.2
958,601 + +0.8
958,601 + -0.6
958,601 + +0.8
958,601 + +2.2
958,602 - -2.1
958,602 - -0.4
958,602 - -1.0
958,602 - -0.0
958,602 - -1.0
958,602 - -0.8
958,602 - -2.3
958,635 + -1.3
958,635 + +0.5
958,635 + -0.1
958,635 + -1.5
958,636 - -0.6

Or see this region's nucleotide sequence