Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04574

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04572 and MPMX19_04573 are separated by 12 nucleotidesMPMX19_04573 and MPMX19_04574 are separated by 23 nucleotidesMPMX19_04574 and MPMX19_04575 are separated by 153 nucleotides MPMX19_04572: MPMX19_04572 - Putative protein-methionine-sulfoxide reductase subunit YedZ1, at 950,357 to 951,010 _04572 MPMX19_04573: MPMX19_04573 - Putative protein-methionine-sulfoxide reductase subunit YedZ1, at 951,023 to 951,814 _04573 MPMX19_04574: MPMX19_04574 - hypothetical protein, at 951,838 to 953,844 _04574 MPMX19_04575: MPMX19_04575 - Cystathionine gamma-synthase, at 953,998 to 955,122 _04575 Position (kb) 951 952 953 954Strain fitness (log2 ratio) -2 -1 0 1 2 3at 951.287 kb on + strand, within MPMX19_04573at 951.287 kb on + strand, within MPMX19_04573at 951.287 kb on + strand, within MPMX19_04573at 951.287 kb on + strand, within MPMX19_04573at 951.288 kb on - strand, within MPMX19_04573at 951.288 kb on - strand, within MPMX19_04573at 951.288 kb on - strand, within MPMX19_04573at 951.288 kb on - strand, within MPMX19_04573at 951.288 kb on - strand, within MPMX19_04573at 951.329 kb on + strand, within MPMX19_04573at 951.329 kb on + strand, within MPMX19_04573at 951.329 kb on + strand, within MPMX19_04573at 951.330 kb on - strand, within MPMX19_04573at 951.330 kb on - strand, within MPMX19_04573at 951.333 kb on - strand, within MPMX19_04573at 951.333 kb on - strand, within MPMX19_04573at 951.333 kb on - strand, within MPMX19_04573at 951.333 kb on - strand, within MPMX19_04573at 951.431 kb on + strand, within MPMX19_04573at 951.431 kb on + strand, within MPMX19_04573at 951.431 kb on + strand, within MPMX19_04573at 951.431 kb on + strand, within MPMX19_04573at 951.432 kb on - strand, within MPMX19_04573at 951.432 kb on - strand, within MPMX19_04573at 951.432 kb on - strand, within MPMX19_04573at 951.432 kb on - strand, within MPMX19_04573at 951.432 kb on - strand, within MPMX19_04573at 951.489 kb on - strand, within MPMX19_04573at 951.489 kb on - strand, within MPMX19_04573at 951.489 kb on - strand, within MPMX19_04573at 951.560 kb on + strand, within MPMX19_04573at 951.560 kb on + strand, within MPMX19_04573at 951.560 kb on + strand, within MPMX19_04573at 951.560 kb on + strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.588 kb on - strand, within MPMX19_04573at 951.647 kb on + strand, within MPMX19_04573at 951.647 kb on + strand, within MPMX19_04573at 951.648 kb on - strand, within MPMX19_04573at 951.761 kb on + strandat 951.761 kb on + strandat 951.761 kb on + strandat 951.761 kb on + strandat 951.762 kb on - strandat 951.762 kb on - strandat 951.762 kb on - strandat 951.762 kb on - strandat 951.762 kb on - strandat 951.762 kb on - strandat 951.762 kb on - strandat 952.294 kb on + strand, within MPMX19_04574at 952.294 kb on + strand, within MPMX19_04574at 952.294 kb on + strand, within MPMX19_04574at 952.295 kb on - strand, within MPMX19_04574at 952.295 kb on - strand, within MPMX19_04574at 952.295 kb on - strand, within MPMX19_04574at 952.295 kb on - strand, within MPMX19_04574at 952.295 kb on - strand, within MPMX19_04574at 952.327 kb on + strand, within MPMX19_04574at 952.327 kb on + strand, within MPMX19_04574at 952.327 kb on + strand, within MPMX19_04574at 952.327 kb on + strand, within MPMX19_04574at 952.327 kb on + strand, within MPMX19_04574at 952.328 kb on - strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.738 kb on + strand, within MPMX19_04574at 952.738 kb on + strand, within MPMX19_04574at 952.739 kb on - strand, within MPMX19_04574at 952.739 kb on - strand, within MPMX19_04574at 952.924 kb on + strand, within MPMX19_04574at 952.925 kb on - strand, within MPMX19_04574at 952.925 kb on - strand, within MPMX19_04574at 953.035 kb on + strand, within MPMX19_04574at 953.036 kb on - strand, within MPMX19_04574at 953.075 kb on - strand, within MPMX19_04574at 953.075 kb on - strand, within MPMX19_04574at 953.774 kb on - strandat 953.813 kb on - strandat 953.813 kb on - strandat 953.813 kb on - strandat 953.813 kb on - strandat 953.813 kb on - strandat 953.813 kb on - strandat 953.813 kb on - strandat 953.813 kb on - strandat 953.877 kb on - strandat 953.900 kb on - strandat 954.085 kb on + strandat 954.085 kb on + strandat 954.085 kb on + strandat 954.085 kb on + strandat 954.085 kb on + strandat 954.085 kb on + strandat 954.085 kb on + strandat 954.085 kb on + strandat 954.085 kb on + strandat 954.086 kb on - strandat 954.086 kb on - strandat 954.086 kb on - strandat 954.127 kb on + strand, within MPMX19_04575at 954.127 kb on + strand, within MPMX19_04575at 954.128 kb on - strand, within MPMX19_04575at 954.128 kb on - strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.286 kb on + strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.287 kb on - strand, within MPMX19_04575at 954.326 kb on - strand, within MPMX19_04575at 954.580 kb on + strand, within MPMX19_04575at 954.580 kb on + strand, within MPMX19_04575at 954.581 kb on - strand, within MPMX19_04575at 954.581 kb on - strand, within MPMX19_04575at 954.818 kb on - strand, within MPMX19_04575at 954.818 kb on - strand, within MPMX19_04575

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
951,287 + MPMX19_04573 0.33 -0.8
951,287 + MPMX19_04573 0.33 +1.4
951,287 + MPMX19_04573 0.33 +0.2
951,287 + MPMX19_04573 0.33 -0.2
951,288 - MPMX19_04573 0.33 -0.1
951,288 - MPMX19_04573 0.33 -0.4
951,288 - MPMX19_04573 0.33 -0.4
951,288 - MPMX19_04573 0.33 +0.4
951,288 - MPMX19_04573 0.33 +0.1
951,329 + MPMX19_04573 0.39 -2.4
951,329 + MPMX19_04573 0.39 -0.4
951,329 + MPMX19_04573 0.39 +1.2
951,330 - MPMX19_04573 0.39 -0.8
951,330 - MPMX19_04573 0.39 +0.4
951,333 - MPMX19_04573 0.39 +0.4
951,333 - MPMX19_04573 0.39 -0.6
951,333 - MPMX19_04573 0.39 -1.1
951,333 - MPMX19_04573 0.39 -1.6
951,431 + MPMX19_04573 0.52 +1.0
951,431 + MPMX19_04573 0.52 -0.1
951,431 + MPMX19_04573 0.52 -0.0
951,431 + MPMX19_04573 0.52 +0.3
951,432 - MPMX19_04573 0.52 +0.1
951,432 - MPMX19_04573 0.52 +0.6
951,432 - MPMX19_04573 0.52 -0.5
951,432 - MPMX19_04573 0.52 +0.6
951,432 - MPMX19_04573 0.52 +0.4
951,489 - MPMX19_04573 0.59 -1.0
951,489 - MPMX19_04573 0.59 -1.7
951,489 - MPMX19_04573 0.59 -0.4
951,560 + MPMX19_04573 0.68 -0.4
951,560 + MPMX19_04573 0.68 +0.2
951,560 + MPMX19_04573 0.68 +0.1
951,560 + MPMX19_04573 0.68 -0.1
951,561 - MPMX19_04573 0.68 -0.1
951,561 - MPMX19_04573 0.68 -0.1
951,561 - MPMX19_04573 0.68 -0.3
951,561 - MPMX19_04573 0.68 +1.2
951,561 - MPMX19_04573 0.68 +0.7
951,561 - MPMX19_04573 0.68 +0.0
951,561 - MPMX19_04573 0.68 -2.3
951,588 - MPMX19_04573 0.71 -1.4
951,647 + MPMX19_04573 0.79 +0.1
951,647 + MPMX19_04573 0.79 -1.1
951,648 - MPMX19_04573 0.79 +0.5
951,761 + +0.1
951,761 + -1.6
951,761 + +0.4
951,761 + -0.3
951,762 - +0.2
951,762 - -0.6
951,762 - -0.7
951,762 - +0.2
951,762 - -1.8
951,762 - -0.4
951,762 - +0.1
952,294 + MPMX19_04574 0.23 +0.0
952,294 + MPMX19_04574 0.23 -0.6
952,294 + MPMX19_04574 0.23 -0.1
952,295 - MPMX19_04574 0.23 -2.1
952,295 - MPMX19_04574 0.23 -0.6
952,295 - MPMX19_04574 0.23 -1.7
952,295 - MPMX19_04574 0.23 +1.2
952,295 - MPMX19_04574 0.23 +0.3
952,327 + MPMX19_04574 0.24 +1.4
952,327 + MPMX19_04574 0.24 +0.1
952,327 + MPMX19_04574 0.24 -1.4
952,327 + MPMX19_04574 0.24 +1.5
952,327 + MPMX19_04574 0.24 -1.7
952,328 - MPMX19_04574 0.24 +1.1
952,330 + MPMX19_04574 0.25 -0.7
952,330 + MPMX19_04574 0.25 +0.2
952,330 + MPMX19_04574 0.25 -0.1
952,330 + MPMX19_04574 0.25 -0.6
952,330 + MPMX19_04574 0.25 -0.5
952,330 + MPMX19_04574 0.25 -1.2
952,330 + MPMX19_04574 0.25 -0.2
952,330 + MPMX19_04574 0.25 -0.6
952,330 + MPMX19_04574 0.25 +0.0
952,330 + MPMX19_04574 0.25 +1.8
952,330 + MPMX19_04574 0.25 -0.4
952,330 + MPMX19_04574 0.25 -0.6
952,331 - MPMX19_04574 0.25 +0.2
952,331 - MPMX19_04574 0.25 -0.2
952,331 - MPMX19_04574 0.25 -0.4
952,331 - MPMX19_04574 0.25 -0.6
952,331 - MPMX19_04574 0.25 -1.3
952,331 - MPMX19_04574 0.25 +0.2
952,331 - MPMX19_04574 0.25 -1.3
952,331 - MPMX19_04574 0.25 -0.7
952,331 - MPMX19_04574 0.25 -1.1
952,331 - MPMX19_04574 0.25 -1.3
952,331 - MPMX19_04574 0.25 +0.7
952,331 - MPMX19_04574 0.25 +0.3
952,333 + MPMX19_04574 0.25 -0.5
952,333 + MPMX19_04574 0.25 -2.5
952,333 + MPMX19_04574 0.25 +0.0
952,333 + MPMX19_04574 0.25 -0.2
952,333 + MPMX19_04574 0.25 +0.0
952,333 + MPMX19_04574 0.25 -2.1
952,333 + MPMX19_04574 0.25 -0.6
952,333 + MPMX19_04574 0.25 -1.4
952,333 + MPMX19_04574 0.25 +0.0
952,333 + MPMX19_04574 0.25 -0.8
952,333 + MPMX19_04574 0.25 -2.2
952,334 - MPMX19_04574 0.25 +0.4
952,334 - MPMX19_04574 0.25 +0.1
952,334 - MPMX19_04574 0.25 +1.2
952,334 - MPMX19_04574 0.25 +0.6
952,334 - MPMX19_04574 0.25 +0.4
952,334 - MPMX19_04574 0.25 +3.5
952,334 - MPMX19_04574 0.25 +0.2
952,334 - MPMX19_04574 0.25 +1.0
952,334 - MPMX19_04574 0.25 +0.1
952,334 - MPMX19_04574 0.25 +0.6
952,334 - MPMX19_04574 0.25 +1.2
952,738 + MPMX19_04574 0.45 -0.0
952,738 + MPMX19_04574 0.45 +1.0
952,739 - MPMX19_04574 0.45 +0.6
952,739 - MPMX19_04574 0.45 +0.4
952,924 + MPMX19_04574 0.54 -1.4
952,925 - MPMX19_04574 0.54 -0.6
952,925 - MPMX19_04574 0.54 +0.6
953,035 + MPMX19_04574 0.60 +0.4
953,036 - MPMX19_04574 0.60 -0.4
953,075 - MPMX19_04574 0.62 -0.3
953,075 - MPMX19_04574 0.62 +0.8
953,774 - -0.1
953,813 - -0.8
953,813 - +1.4
953,813 - -1.5
953,813 - -0.9
953,813 - +0.4
953,813 - -0.2
953,813 - -1.1
953,813 - -0.5
953,877 - +0.0
953,900 - +0.2
954,085 + +0.4
954,085 + +0.4
954,085 + -0.6
954,085 + -0.4
954,085 + +0.1
954,085 + -0.5
954,085 + +1.6
954,085 + +0.2
954,085 + -1.0
954,086 - -1.1
954,086 - -0.4
954,086 - -1.2
954,127 + MPMX19_04575 0.11 +0.9
954,127 + MPMX19_04575 0.11 -0.8
954,128 - MPMX19_04575 0.12 +0.0
954,128 - MPMX19_04575 0.12 -0.1
954,286 + MPMX19_04575 0.26 +0.5
954,286 + MPMX19_04575 0.26 -1.0
954,286 + MPMX19_04575 0.26 +0.6
954,286 + MPMX19_04575 0.26 +2.2
954,286 + MPMX19_04575 0.26 -1.3
954,286 + MPMX19_04575 0.26 +2.2
954,286 + MPMX19_04575 0.26 -1.2
954,286 + MPMX19_04575 0.26 -0.6
954,286 + MPMX19_04575 0.26 +0.4
954,286 + MPMX19_04575 0.26 +0.6
954,286 + MPMX19_04575 0.26 -0.0
954,286 + MPMX19_04575 0.26 -2.3
954,286 + MPMX19_04575 0.26 -1.3
954,286 + MPMX19_04575 0.26 -0.1
954,287 - MPMX19_04575 0.26 +0.1
954,287 - MPMX19_04575 0.26 -1.8
954,287 - MPMX19_04575 0.26 -0.9
954,287 - MPMX19_04575 0.26 -1.9
954,287 - MPMX19_04575 0.26 -0.3
954,287 - MPMX19_04575 0.26 -0.4
954,287 - MPMX19_04575 0.26 -2.3
954,287 - MPMX19_04575 0.26 -2.0
954,287 - MPMX19_04575 0.26 -1.1
954,287 - MPMX19_04575 0.26 -1.0
954,287 - MPMX19_04575 0.26 -1.5
954,287 - MPMX19_04575 0.26 -1.3
954,287 - MPMX19_04575 0.26 +0.4
954,287 - MPMX19_04575 0.26 +1.6
954,287 - MPMX19_04575 0.26 -0.8
954,287 - MPMX19_04575 0.26 -0.8
954,287 - MPMX19_04575 0.26 -0.6
954,287 - MPMX19_04575 0.26 -1.1
954,287 - MPMX19_04575 0.26 -0.3
954,326 - MPMX19_04575 0.29 -0.2
954,580 + MPMX19_04575 0.52 +2.2
954,580 + MPMX19_04575 0.52 -1.4
954,581 - MPMX19_04575 0.52 -0.6
954,581 - MPMX19_04575 0.52 -1.3
954,818 - MPMX19_04575 0.73 +0.6
954,818 - MPMX19_04575 0.73 -0.4

Or see this region's nucleotide sequence