Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04571

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04569 and MPMX19_04570 overlap by 4 nucleotidesMPMX19_04570 and MPMX19_04571 are separated by 323 nucleotidesMPMX19_04571 and MPMX19_04572 are separated by 118 nucleotidesMPMX19_04572 and MPMX19_04573 are separated by 12 nucleotides MPMX19_04569: MPMX19_04569 - Anti-sigma-F factor NrsF, at 948,240 to 948,875 _04569 MPMX19_04570: MPMX19_04570 - ECF RNA polymerase sigma factor SigF, at 948,872 to 949,429 _04570 MPMX19_04571: MPMX19_04571 - hypothetical protein, at 949,753 to 950,238 _04571 MPMX19_04572: MPMX19_04572 - Putative protein-methionine-sulfoxide reductase subunit YedZ1, at 950,357 to 951,010 _04572 MPMX19_04573: MPMX19_04573 - Putative protein-methionine-sulfoxide reductase subunit YedZ1, at 951,023 to 951,814 _04573 Position (kb) 949 950 951Strain fitness (log2 ratio) -2 -1 0 1 2 3at 948.994 kb on + strand, within MPMX19_04570at 949.094 kb on + strand, within MPMX19_04570at 949.165 kb on + strand, within MPMX19_04570at 949.165 kb on + strand, within MPMX19_04570at 949.165 kb on + strand, within MPMX19_04570at 949.165 kb on + strand, within MPMX19_04570at 949.165 kb on + strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.384 kb on + strandat 949.384 kb on + strandat 949.385 kb on - strandat 949.385 kb on - strandat 949.385 kb on - strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.557 kb on - strandat 949.606 kb on + strandat 949.606 kb on + strandat 949.606 kb on + strandat 949.606 kb on + strandat 949.606 kb on + strandat 949.607 kb on - strandat 949.629 kb on + strandat 949.629 kb on + strandat 949.629 kb on + strandat 949.629 kb on + strandat 949.630 kb on - strandat 949.630 kb on - strandat 949.630 kb on - strandat 949.647 kb on + strandat 949.648 kb on - strandat 950.007 kb on + strand, within MPMX19_04571at 950.007 kb on + strand, within MPMX19_04571at 950.007 kb on + strand, within MPMX19_04571at 950.007 kb on + strand, within MPMX19_04571at 950.007 kb on + strand, within MPMX19_04571at 950.008 kb on - strand, within MPMX19_04571at 950.008 kb on - strand, within MPMX19_04571at 950.008 kb on - strand, within MPMX19_04571at 950.456 kb on + strand, within MPMX19_04572at 950.456 kb on + strand, within MPMX19_04572at 950.456 kb on + strand, within MPMX19_04572at 950.456 kb on + strand, within MPMX19_04572at 950.457 kb on - strand, within MPMX19_04572at 950.457 kb on - strand, within MPMX19_04572at 950.457 kb on - strand, within MPMX19_04572at 950.457 kb on - strand, within MPMX19_04572at 950.514 kb on + strand, within MPMX19_04572at 950.515 kb on - strand, within MPMX19_04572at 950.582 kb on + strand, within MPMX19_04572at 950.582 kb on + strand, within MPMX19_04572at 950.583 kb on - strand, within MPMX19_04572at 950.583 kb on - strand, within MPMX19_04572at 950.583 kb on - strand, within MPMX19_04572at 950.591 kb on + strand, within MPMX19_04572at 950.591 kb on + strand, within MPMX19_04572at 950.591 kb on + strand, within MPMX19_04572at 950.591 kb on + strand, within MPMX19_04572at 950.591 kb on + strand, within MPMX19_04572at 950.591 kb on + strand, within MPMX19_04572at 950.592 kb on - strand, within MPMX19_04572at 950.592 kb on - strand, within MPMX19_04572at 950.592 kb on - strand, within MPMX19_04572at 950.592 kb on - strand, within MPMX19_04572at 950.592 kb on - strand, within MPMX19_04572at 950.634 kb on + strand, within MPMX19_04572at 950.634 kb on + strand, within MPMX19_04572at 950.634 kb on + strand, within MPMX19_04572at 950.634 kb on + strand, within MPMX19_04572at 950.635 kb on - strand, within MPMX19_04572at 950.635 kb on - strand, within MPMX19_04572at 950.708 kb on + strand, within MPMX19_04572at 950.708 kb on + strand, within MPMX19_04572at 950.708 kb on + strand, within MPMX19_04572at 950.709 kb on - strand, within MPMX19_04572at 950.709 kb on - strand, within MPMX19_04572at 950.732 kb on + strand, within MPMX19_04572at 950.732 kb on + strand, within MPMX19_04572at 950.732 kb on + strand, within MPMX19_04572at 950.733 kb on - strand, within MPMX19_04572at 950.733 kb on - strand, within MPMX19_04572at 950.733 kb on - strand, within MPMX19_04572at 950.825 kb on + strand, within MPMX19_04572at 950.825 kb on + strand, within MPMX19_04572at 950.826 kb on - strand, within MPMX19_04572at 950.826 kb on - strand, within MPMX19_04572at 950.826 kb on - strand, within MPMX19_04572at 950.826 kb on - strand, within MPMX19_04572at 950.826 kb on - strand, within MPMX19_04572

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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948,994 + MPMX19_04570 0.22 -0.1
949,094 + MPMX19_04570 0.40 -0.1
949,165 + MPMX19_04570 0.53 -0.7
949,165 + MPMX19_04570 0.53 -0.3
949,165 + MPMX19_04570 0.53 +1.2
949,165 + MPMX19_04570 0.53 -1.3
949,165 + MPMX19_04570 0.53 -0.1
949,166 - MPMX19_04570 0.53 -0.9
949,166 - MPMX19_04570 0.53 -1.9
949,166 - MPMX19_04570 0.53 -0.7
949,166 - MPMX19_04570 0.53 -0.3
949,166 - MPMX19_04570 0.53 -1.0
949,166 - MPMX19_04570 0.53 +0.1
949,166 - MPMX19_04570 0.53 +0.6
949,166 - MPMX19_04570 0.53 -1.1
949,166 - MPMX19_04570 0.53 -1.1
949,166 - MPMX19_04570 0.53 -0.6
949,166 - MPMX19_04570 0.53 -1.4
949,384 + -0.1
949,384 + -1.6
949,385 - +0.5
949,385 - -0.6
949,385 - -1.6
949,479 + +0.2
949,479 + +0.2
949,479 + -0.4
949,479 + +0.6
949,479 + +1.6
949,479 + +1.3
949,479 + -0.7
949,479 + +1.2
949,479 + -0.5
949,479 + -1.0
949,479 + -0.0
949,480 - +0.9
949,480 - -1.4
949,480 - -0.8
949,480 - -0.8
949,480 - -1.7
949,480 - -0.4
949,480 - -0.5
949,480 - +1.0
949,480 - -1.2
949,480 - -1.5
949,557 - -2.7
949,606 + +1.2
949,606 + -1.9
949,606 + -0.5
949,606 + -1.7
949,606 + -0.8
949,607 - -1.6
949,629 + +0.9
949,629 + +0.2
949,629 + -0.1
949,629 + -0.8
949,630 - +1.2
949,630 - +0.9
949,630 - -0.1
949,647 + +0.4
949,648 - -0.6
950,007 + MPMX19_04571 0.52 -0.0
950,007 + MPMX19_04571 0.52 -0.8
950,007 + MPMX19_04571 0.52 -0.8
950,007 + MPMX19_04571 0.52 -1.2
950,007 + MPMX19_04571 0.52 -1.1
950,008 - MPMX19_04571 0.52 +0.9
950,008 - MPMX19_04571 0.52 -2.3
950,008 - MPMX19_04571 0.52 +0.5
950,456 + MPMX19_04572 0.15 -0.8
950,456 + MPMX19_04572 0.15 -0.4
950,456 + MPMX19_04572 0.15 +0.9
950,456 + MPMX19_04572 0.15 -0.6
950,457 - MPMX19_04572 0.15 +0.6
950,457 - MPMX19_04572 0.15 -0.7
950,457 - MPMX19_04572 0.15 +0.2
950,457 - MPMX19_04572 0.15 +0.2
950,514 + MPMX19_04572 0.24 +0.6
950,515 - MPMX19_04572 0.24 -2.0
950,582 + MPMX19_04572 0.34 -2.0
950,582 + MPMX19_04572 0.34 -1.0
950,583 - MPMX19_04572 0.35 -0.1
950,583 - MPMX19_04572 0.35 -1.4
950,583 - MPMX19_04572 0.35 +2.9
950,591 + MPMX19_04572 0.36 -0.5
950,591 + MPMX19_04572 0.36 -1.1
950,591 + MPMX19_04572 0.36 +0.3
950,591 + MPMX19_04572 0.36 -2.4
950,591 + MPMX19_04572 0.36 -0.5
950,591 + MPMX19_04572 0.36 -0.6
950,592 - MPMX19_04572 0.36 -0.2
950,592 - MPMX19_04572 0.36 -1.0
950,592 - MPMX19_04572 0.36 +0.3
950,592 - MPMX19_04572 0.36 -0.3
950,592 - MPMX19_04572 0.36 -0.8
950,634 + MPMX19_04572 0.42 +2.2
950,634 + MPMX19_04572 0.42 -0.3
950,634 + MPMX19_04572 0.42 -1.5
950,634 + MPMX19_04572 0.42 +0.2
950,635 - MPMX19_04572 0.43 -0.3
950,635 - MPMX19_04572 0.43 -1.3
950,708 + MPMX19_04572 0.54 +0.3
950,708 + MPMX19_04572 0.54 -0.6
950,708 + MPMX19_04572 0.54 +1.0
950,709 - MPMX19_04572 0.54 -0.8
950,709 - MPMX19_04572 0.54 -2.4
950,732 + MPMX19_04572 0.57 -1.4
950,732 + MPMX19_04572 0.57 -0.6
950,732 + MPMX19_04572 0.57 -0.8
950,733 - MPMX19_04572 0.57 +0.7
950,733 - MPMX19_04572 0.57 -1.0
950,733 - MPMX19_04572 0.57 +0.2
950,825 + MPMX19_04572 0.72 -0.1
950,825 + MPMX19_04572 0.72 -0.1
950,826 - MPMX19_04572 0.72 +0.1
950,826 - MPMX19_04572 0.72 -0.4
950,826 - MPMX19_04572 0.72 -1.1
950,826 - MPMX19_04572 0.72 -0.2
950,826 - MPMX19_04572 0.72 -0.9

Or see this region's nucleotide sequence