Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04557

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04555 and MPMX19_04556 are separated by 63 nucleotidesMPMX19_04556 and MPMX19_04557 are separated by 546 nucleotidesMPMX19_04557 and MPMX19_04558 are separated by 184 nucleotides MPMX19_04555: MPMX19_04555 - Sensor histidine kinase RcsC, at 931,782 to 935,606 _04555 MPMX19_04556: MPMX19_04556 - hypothetical protein, at 935,670 to 935,873 _04556 MPMX19_04557: MPMX19_04557 - Na(+)/H(+) antiporter NhaA, at 936,420 to 937,625 _04557 MPMX19_04558: MPMX19_04558 - hypothetical protein, at 937,810 to 940,437 _04558 Position (kb) 936 937 938Strain fitness (log2 ratio) -2 -1 0 1 2at 935.437 kb on + strandat 935.437 kb on + strandat 935.438 kb on - strandat 935.642 kb on + strandat 935.643 kb on - strandat 935.643 kb on - strandat 935.643 kb on - strandat 935.643 kb on - strandat 935.791 kb on + strand, within MPMX19_04556at 935.889 kb on + strandat 935.889 kb on + strandat 935.890 kb on - strandat 935.924 kb on - strandat 935.982 kb on + strandat 935.983 kb on - strandat 936.026 kb on + strandat 936.034 kb on + strandat 936.035 kb on - strandat 936.035 kb on - strandat 936.331 kb on + strandat 936.331 kb on + strandat 936.331 kb on + strandat 936.333 kb on + strandat 936.333 kb on + strandat 936.333 kb on + strandat 936.333 kb on + strandat 936.333 kb on + strandat 936.333 kb on + strandat 936.333 kb on + strandat 936.333 kb on - strandat 936.334 kb on - strandat 936.334 kb on - strandat 936.334 kb on - strandat 936.335 kb on + strandat 936.335 kb on + strandat 936.335 kb on + strandat 936.335 kb on + strandat 936.335 kb on + strandat 936.335 kb on + strandat 936.336 kb on - strandat 936.336 kb on - strandat 936.336 kb on - strandat 936.336 kb on - strandat 936.336 kb on - strandat 936.386 kb on - strandat 936.419 kb on + strandat 936.420 kb on - strandat 936.564 kb on + strand, within MPMX19_04557at 936.564 kb on + strand, within MPMX19_04557at 936.565 kb on - strand, within MPMX19_04557at 936.565 kb on - strand, within MPMX19_04557at 936.585 kb on + strand, within MPMX19_04557at 936.585 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.763 kb on - strand, within MPMX19_04557at 936.763 kb on - strand, within MPMX19_04557at 936.763 kb on - strand, within MPMX19_04557at 936.763 kb on - strand, within MPMX19_04557at 936.763 kb on - strand, within MPMX19_04557at 936.763 kb on - strand, within MPMX19_04557at 936.763 kb on - strand, within MPMX19_04557at 936.951 kb on + strand, within MPMX19_04557at 936.951 kb on + strand, within MPMX19_04557at 936.952 kb on - strand, within MPMX19_04557at 936.952 kb on - strand, within MPMX19_04557at 936.952 kb on - strand, within MPMX19_04557at 936.952 kb on - strand, within MPMX19_04557at 937.050 kb on + strand, within MPMX19_04557at 937.051 kb on - strand, within MPMX19_04557at 937.051 kb on - strand, within MPMX19_04557at 937.051 kb on - strand, within MPMX19_04557at 937.051 kb on - strand, within MPMX19_04557at 937.585 kb on - strandat 937.623 kb on + strandat 937.624 kb on - strandat 937.877 kb on + strandat 937.877 kb on + strandat 937.877 kb on + strandat 937.877 kb on + strandat 937.878 kb on - strandat 937.878 kb on - strandat 937.878 kb on - strandat 937.878 kb on - strandat 937.878 kb on - strandat 937.878 kb on - strandat 937.878 kb on - strandat 937.889 kb on + strandat 937.889 kb on + strandat 937.889 kb on + strandat 937.889 kb on + strandat 937.889 kb on + strandat 937.889 kb on + strandat 937.889 kb on + strandat 937.889 kb on + strandat 937.890 kb on - strandat 937.890 kb on - strandat 937.890 kb on - strandat 937.890 kb on - strandat 937.890 kb on - strandat 938.058 kb on + strandat 938.096 kb on + strand, within MPMX19_04558at 938.096 kb on + strand, within MPMX19_04558at 938.096 kb on + strand, within MPMX19_04558at 938.096 kb on + strand, within MPMX19_04558at 938.097 kb on - strand, within MPMX19_04558at 938.261 kb on + strand, within MPMX19_04558at 938.261 kb on + strand, within MPMX19_04558at 938.261 kb on + strand, within MPMX19_04558at 938.261 kb on + strand, within MPMX19_04558at 938.261 kb on + strand, within MPMX19_04558at 938.262 kb on - strand, within MPMX19_04558at 938.262 kb on - strand, within MPMX19_04558at 938.262 kb on - strand, within MPMX19_04558at 938.262 kb on - strand, within MPMX19_04558at 938.262 kb on - strand, within MPMX19_04558at 938.262 kb on - strand, within MPMX19_04558at 938.262 kb on - strand, within MPMX19_04558at 938.520 kb on - strand, within MPMX19_04558at 938.520 kb on - strand, within MPMX19_04558at 938.520 kb on - strand, within MPMX19_04558at 938.520 kb on - strand, within MPMX19_04558at 938.520 kb on - strand, within MPMX19_04558at 938.520 kb on - strand, within MPMX19_04558at 938.520 kb on - strand, within MPMX19_04558

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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935,437 + +1.2
935,437 + -0.7
935,438 - -1.1
935,642 + +0.2
935,643 - -0.5
935,643 - -0.1
935,643 - +0.8
935,643 - -0.6
935,791 + MPMX19_04556 0.59 -0.6
935,889 + -2.5
935,889 + -0.6
935,890 - -0.2
935,924 - -1.3
935,982 + +0.2
935,983 - -1.2
936,026 + -2.1
936,034 + -0.6
936,035 - +0.1
936,035 - +0.3
936,331 + -0.6
936,331 + -0.8
936,331 + -2.5
936,333 + -0.4
936,333 + +0.1
936,333 + -0.6
936,333 + -1.2
936,333 + -0.8
936,333 + -1.4
936,333 + -0.4
936,333 - +0.6
936,334 - -2.1
936,334 - +0.2
936,334 - +0.1
936,335 + -0.6
936,335 + -1.9
936,335 + +0.8
936,335 + +0.6
936,335 + +0.6
936,335 + -1.8
936,336 - -2.1
936,336 - -1.6
936,336 - -0.6
936,336 - -1.6
936,336 - -0.3
936,386 - +0.7
936,419 + +0.5
936,420 - -0.2
936,564 + MPMX19_04557 0.12 -1.4
936,564 + MPMX19_04557 0.12 -0.9
936,565 - MPMX19_04557 0.12 +0.2
936,565 - MPMX19_04557 0.12 +1.0
936,585 + MPMX19_04557 0.14 -0.5
936,585 + MPMX19_04557 0.14 -0.6
936,762 + MPMX19_04557 0.28 -0.2
936,762 + MPMX19_04557 0.28 +0.2
936,762 + MPMX19_04557 0.28 -0.8
936,762 + MPMX19_04557 0.28 +0.9
936,762 + MPMX19_04557 0.28 +1.2
936,762 + MPMX19_04557 0.28 +0.6
936,762 + MPMX19_04557 0.28 +0.2
936,762 + MPMX19_04557 0.28 -1.0
936,762 + MPMX19_04557 0.28 -1.3
936,762 + MPMX19_04557 0.28 -0.8
936,762 + MPMX19_04557 0.28 +0.2
936,763 - MPMX19_04557 0.28 -0.6
936,763 - MPMX19_04557 0.28 +0.9
936,763 - MPMX19_04557 0.28 +0.6
936,763 - MPMX19_04557 0.28 +1.2
936,763 - MPMX19_04557 0.28 -1.1
936,763 - MPMX19_04557 0.28 +1.5
936,763 - MPMX19_04557 0.28 -0.1
936,951 + MPMX19_04557 0.44 -0.1
936,951 + MPMX19_04557 0.44 -0.8
936,952 - MPMX19_04557 0.44 -0.8
936,952 - MPMX19_04557 0.44 +0.2
936,952 - MPMX19_04557 0.44 -1.1
936,952 - MPMX19_04557 0.44 +0.2
937,050 + MPMX19_04557 0.52 -0.8
937,051 - MPMX19_04557 0.52 -0.6
937,051 - MPMX19_04557 0.52 -1.6
937,051 - MPMX19_04557 0.52 -1.5
937,051 - MPMX19_04557 0.52 -0.9
937,585 - -1.5
937,623 + -0.0
937,624 - +0.4
937,877 + -0.1
937,877 + -0.6
937,877 + -1.1
937,877 + -0.4
937,878 - -0.4
937,878 - -0.5
937,878 - +0.4
937,878 - -1.3
937,878 - +0.1
937,878 - +1.0
937,878 - +1.0
937,889 + -0.0
937,889 + -1.0
937,889 + +0.6
937,889 + +1.1
937,889 + -1.4
937,889 + -0.4
937,889 + +0.3
937,889 + -0.1
937,890 - -0.1
937,890 - +0.4
937,890 - -0.6
937,890 - +0.6
937,890 - +0.2
938,058 + -0.9
938,096 + MPMX19_04558 0.11 +2.2
938,096 + MPMX19_04558 0.11 -1.5
938,096 + MPMX19_04558 0.11 +0.2
938,096 + MPMX19_04558 0.11 +0.4
938,097 - MPMX19_04558 0.11 -1.1
938,261 + MPMX19_04558 0.17 -1.1
938,261 + MPMX19_04558 0.17 -0.6
938,261 + MPMX19_04558 0.17 +0.4
938,261 + MPMX19_04558 0.17 -1.2
938,261 + MPMX19_04558 0.17 +0.6
938,262 - MPMX19_04558 0.17 +0.6
938,262 - MPMX19_04558 0.17 -2.1
938,262 - MPMX19_04558 0.17 -0.1
938,262 - MPMX19_04558 0.17 +0.4
938,262 - MPMX19_04558 0.17 -0.9
938,262 - MPMX19_04558 0.17 -0.1
938,262 - MPMX19_04558 0.17 -1.0
938,520 - MPMX19_04558 0.27 -0.4
938,520 - MPMX19_04558 0.27 -0.6
938,520 - MPMX19_04558 0.27 -1.0
938,520 - MPMX19_04558 0.27 -0.6
938,520 - MPMX19_04558 0.27 +0.9
938,520 - MPMX19_04558 0.27 -1.1
938,520 - MPMX19_04558 0.27 -0.3

Or see this region's nucleotide sequence