Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04544 and MPMX19_04545 are separated by 44 nucleotides MPMX19_04545 and MPMX19_04546 are separated by 119 nucleotides MPMX19_04546 and MPMX19_04547 are separated by 63 nucleotides
MPMX19_04544: MPMX19_04544 - hypothetical protein, at 916,951 to 920,484
_04544
MPMX19_04545: MPMX19_04545 - hypothetical protein, at 920,529 to 921,206
_04545
MPMX19_04546: MPMX19_04546 - Glutamine transport ATP-binding protein GlnQ, at 921,326 to 922,054
_04546
MPMX19_04547: MPMX19_04547 - D-amino acid dehydrogenase, at 922,118 to 925,087
_04547
Position (kb) 920
921
922 Strain fitness (log2 ratio) -2
-1
0
1
2 at 919.636 kb on + strand, within MPMX19_04544 at 919.870 kb on + strand, within MPMX19_04544 at 919.885 kb on + strand, within MPMX19_04544 at 919.885 kb on + strand, within MPMX19_04544 at 919.885 kb on + strand, within MPMX19_04544 at 919.886 kb on - strand, within MPMX19_04544 at 919.886 kb on - strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.988 kb on - strand, within MPMX19_04544 at 919.988 kb on - strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.003 kb on - strand, within MPMX19_04544 at 920.014 kb on + strand, within MPMX19_04544 at 920.014 kb on + strand, within MPMX19_04544 at 920.014 kb on + strand, within MPMX19_04544 at 920.015 kb on - strand, within MPMX19_04544 at 920.015 kb on - strand, within MPMX19_04544 at 920.033 kb on - strand, within MPMX19_04544 at 920.033 kb on - strand, within MPMX19_04544 at 920.033 kb on - strand, within MPMX19_04544 at 920.161 kb on + strand at 920.161 kb on + strand at 920.161 kb on + strand at 920.161 kb on + strand at 920.162 kb on - strand at 920.162 kb on - strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.285 kb on - strand at 920.285 kb on - strand at 920.285 kb on - strand at 920.576 kb on + strand at 920.576 kb on + strand at 920.577 kb on - strand at 920.938 kb on + strand, within MPMX19_04545 at 920.938 kb on + strand, within MPMX19_04545 at 921.134 kb on - strand, within MPMX19_04545 at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.297 kb on + strand at 921.864 kb on + strand, within MPMX19_04546 at 922.023 kb on + strand at 922.023 kb on + strand at 922.023 kb on + strand at 922.023 kb on + strand at 922.023 kb on + strand at 922.024 kb on - strand at 922.024 kb on - strand at 922.024 kb on - strand at 922.024 kb on - strand at 922.024 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 919,636 + MPMX19_04544 0.76 -1.1 919,870 + MPMX19_04544 0.83 -1.3 919,885 + MPMX19_04544 0.83 +0.2 919,885 + MPMX19_04544 0.83 +0.7 919,885 + MPMX19_04544 0.83 -1.2 919,886 - MPMX19_04544 0.83 -1.5 919,886 - MPMX19_04544 0.83 -1.8 919,987 + MPMX19_04544 0.86 -0.4 919,987 + MPMX19_04544 0.86 -0.6 919,987 + MPMX19_04544 0.86 -0.5 919,987 + MPMX19_04544 0.86 -1.6 919,987 + MPMX19_04544 0.86 -0.1 919,987 + MPMX19_04544 0.86 -0.9 919,987 + MPMX19_04544 0.86 +0.8 919,988 - MPMX19_04544 0.86 +0.7 919,988 - MPMX19_04544 0.86 -0.3 920,002 + MPMX19_04544 0.86 +1.2 920,002 + MPMX19_04544 0.86 -0.8 920,002 + MPMX19_04544 0.86 -0.4 920,002 + MPMX19_04544 0.86 -0.8 920,002 + MPMX19_04544 0.86 +1.2 920,003 - MPMX19_04544 0.86 +0.3 920,014 + MPMX19_04544 0.87 +1.2 920,014 + MPMX19_04544 0.87 +1.5 920,014 + MPMX19_04544 0.87 -1.4 920,015 - MPMX19_04544 0.87 +0.4 920,015 - MPMX19_04544 0.87 -1.9 920,033 - MPMX19_04544 0.87 -1.6 920,033 - MPMX19_04544 0.87 -1.8 920,033 - MPMX19_04544 0.87 -0.2 920,161 + +0.8 920,161 + +0.9 920,161 + -1.8 920,161 + -0.4 920,162 - +0.4 920,162 - -0.3 920,284 + -0.6 920,284 + -1.4 920,284 + +0.3 920,284 + -0.8 920,284 + -1.7 920,284 + -0.9 920,284 + -0.1 920,285 - -0.4 920,285 - +0.2 920,285 - +0.2 920,576 + -1.1 920,576 + +0.2 920,577 - +1.0 920,938 + MPMX19_04545 0.60 +1.4 920,938 + MPMX19_04545 0.60 -0.6 921,134 - MPMX19_04545 0.89 -0.3 921,206 + -1.1 921,206 + +0.6 921,206 + +1.5 921,206 + -0.4 921,206 + -1.1 921,206 + -0.3 921,206 + +0.1 921,206 + -0.8 921,207 - -1.0 921,207 - -0.6 921,207 - +0.2 921,207 - -0.8 921,207 - -0.5 921,207 - -0.4 921,297 + -0.5 921,864 + MPMX19_04546 0.74 +1.5 922,023 + +2.5 922,023 + -0.0 922,023 + +0.2 922,023 + -2.2 922,023 + -0.8 922,024 - -0.6 922,024 - -0.4 922,024 - +0.7 922,024 - -0.5 922,024 - -0.3
Or see this region's nucleotide sequence