Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04541 and MPMX19_04542 overlap by 4 nucleotides MPMX19_04542 and MPMX19_04543 are separated by 177 nucleotides MPMX19_04543 and MPMX19_04544 are separated by 141 nucleotides
MPMX19_04541: MPMX19_04541 - Lipopolysaccharide export system ATP-binding protein LptB, at 914,342 to 915,175
_04541
MPMX19_04542: MPMX19_04542 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 915,172 to 915,897
_04542
MPMX19_04543: MPMX19_04543 - hypothetical protein, at 916,075 to 916,809
_04543
MPMX19_04544: MPMX19_04544 - hypothetical protein, at 916,951 to 920,484
_04544
Position (kb) 916
917 Strain fitness (log2 ratio) -2
-1
0
1
2 at 915.077 kb on + strand, within MPMX19_04541 at 915.077 kb on + strand, within MPMX19_04541 at 915.078 kb on - strand, within MPMX19_04541 at 915.205 kb on + strand at 915.205 kb on + strand at 915.205 kb on + strand at 915.206 kb on - strand at 915.206 kb on - strand at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.538 kb on + strand, within MPMX19_04542 at 915.539 kb on - strand, within MPMX19_04542 at 915.793 kb on + strand, within MPMX19_04542 at 915.793 kb on + strand, within MPMX19_04542 at 915.794 kb on - strand, within MPMX19_04542 at 915.794 kb on - strand, within MPMX19_04542 at 915.794 kb on - strand, within MPMX19_04542 at 915.794 kb on - strand, within MPMX19_04542 at 915.794 kb on - strand, within MPMX19_04542 at 915.794 kb on - strand, within MPMX19_04542 at 915.871 kb on + strand at 915.871 kb on + strand at 915.871 kb on + strand at 915.872 kb on - strand at 915.872 kb on - strand at 915.872 kb on - strand at 915.872 kb on - strand at 915.872 kb on - strand at 915.932 kb on + strand at 915.932 kb on + strand at 915.933 kb on - strand at 915.933 kb on - strand at 915.933 kb on - strand at 915.933 kb on - strand at 915.933 kb on - strand at 915.933 kb on - strand at 915.934 kb on + strand at 915.935 kb on - strand at 915.935 kb on - strand at 915.946 kb on + strand at 915.961 kb on - strand at 915.961 kb on - strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.330 kb on + strand, within MPMX19_04543 at 916.331 kb on - strand, within MPMX19_04543 at 916.331 kb on - strand, within MPMX19_04543 at 916.331 kb on - strand, within MPMX19_04543 at 916.729 kb on - strand, within MPMX19_04543 at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 917.000 kb on - strand at 917.000 kb on - strand at 917.000 kb on - strand at 917.000 kb on - strand at 917.000 kb on - strand at 917.302 kb on + strand at 917.303 kb on - strand at 917.303 kb on - strand at 917.446 kb on + strand, within MPMX19_04544 at 917.447 kb on - strand, within MPMX19_04544 at 917.447 kb on - strand, within MPMX19_04544 at 917.509 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 915,077 + MPMX19_04541 0.88 -1.5 915,077 + MPMX19_04541 0.88 -0.1 915,078 - MPMX19_04541 0.88 -1.0 915,205 + -0.8 915,205 + -0.4 915,205 + -1.1 915,206 - -1.4 915,206 - +0.1 915,418 + MPMX19_04542 0.34 -0.6 915,418 + MPMX19_04542 0.34 -0.9 915,418 + MPMX19_04542 0.34 -1.0 915,418 + MPMX19_04542 0.34 -0.4 915,418 + MPMX19_04542 0.34 +0.3 915,418 + MPMX19_04542 0.34 -0.4 915,418 + MPMX19_04542 0.34 -0.9 915,418 + MPMX19_04542 0.34 -1.1 915,418 + MPMX19_04542 0.34 -0.7 915,418 + MPMX19_04542 0.34 +0.4 915,418 + MPMX19_04542 0.34 -0.7 915,418 + MPMX19_04542 0.34 -0.6 915,418 + MPMX19_04542 0.34 -1.1 915,418 + MPMX19_04542 0.34 -0.0 915,418 + MPMX19_04542 0.34 +0.4 915,419 - MPMX19_04542 0.34 -0.6 915,419 - MPMX19_04542 0.34 +1.4 915,419 - MPMX19_04542 0.34 -1.0 915,419 - MPMX19_04542 0.34 -1.9 915,419 - MPMX19_04542 0.34 -1.7 915,419 - MPMX19_04542 0.34 -1.0 915,419 - MPMX19_04542 0.34 +0.2 915,419 - MPMX19_04542 0.34 -1.9 915,419 - MPMX19_04542 0.34 +0.0 915,419 - MPMX19_04542 0.34 +0.1 915,419 - MPMX19_04542 0.34 -0.3 915,419 - MPMX19_04542 0.34 -0.8 915,419 - MPMX19_04542 0.34 +0.0 915,538 + MPMX19_04542 0.50 -0.8 915,539 - MPMX19_04542 0.51 -1.4 915,793 + MPMX19_04542 0.86 -0.4 915,793 + MPMX19_04542 0.86 -1.1 915,794 - MPMX19_04542 0.86 -0.3 915,794 - MPMX19_04542 0.86 -1.7 915,794 - MPMX19_04542 0.86 +1.4 915,794 - MPMX19_04542 0.86 +0.9 915,794 - MPMX19_04542 0.86 +0.2 915,794 - MPMX19_04542 0.86 -2.1 915,871 + -1.1 915,871 + -1.6 915,871 + -1.3 915,872 - -1.8 915,872 - -0.3 915,872 - +0.4 915,872 - -0.9 915,872 - -0.5 915,932 + -0.9 915,932 + -1.3 915,933 - -1.4 915,933 - -0.4 915,933 - +1.2 915,933 - -0.4 915,933 - +1.2 915,933 - +1.4 915,934 + -0.3 915,935 - +0.3 915,935 - -1.2 915,946 + -1.1 915,961 - -0.5 915,961 - -0.5 916,065 + -1.9 916,065 + -1.3 916,065 + +0.3 916,065 + +0.1 916,065 + +0.6 916,065 + +0.1 916,065 + +2.2 916,065 + -0.3 916,066 - -1.3 916,066 - -0.1 916,066 - +1.6 916,066 - -0.4 916,066 - +1.2 916,330 + MPMX19_04543 0.35 -0.4 916,331 - MPMX19_04543 0.35 -1.3 916,331 - MPMX19_04543 0.35 -0.0 916,331 - MPMX19_04543 0.35 -0.6 916,729 - MPMX19_04543 0.89 +1.2 916,786 + -1.2 916,786 + +0.9 916,786 + -0.1 916,786 + -0.2 916,786 + +1.9 916,786 + -1.5 916,786 + -1.5 916,786 + +0.9 916,786 + +1.4 916,786 + -1.7 916,786 + -1.4 916,786 + -0.5 916,786 + -0.6 916,786 + -0.5 916,786 + +0.0 916,786 + -0.7 916,786 + +0.4 916,786 + -2.2 916,786 + -1.1 916,786 + -0.1 916,786 + -0.9 916,786 + -0.3 916,786 + -0.8 916,787 - -0.6 916,787 - +0.1 916,787 - +1.4 916,787 - +0.2 916,787 - +0.1 916,787 - +0.3 916,787 - -1.4 916,787 - +0.4 916,787 - +1.2 916,787 - -0.6 916,787 - +1.3 916,787 - -1.3 916,787 - -0.7 916,787 - -1.4 916,787 - -0.3 916,999 + -1.0 916,999 + -1.3 916,999 + -0.4 916,999 + -0.5 916,999 + +0.2 916,999 + -0.7 916,999 + -0.2 916,999 + +0.4 916,999 + -1.0 916,999 + -1.0 916,999 + -0.8 916,999 + -0.3 916,999 + -0.1 917,000 - +1.1 917,000 - -1.1 917,000 - -0.6 917,000 - -1.0 917,000 - -0.7 917,302 + -1.9 917,303 - -1.4 917,303 - +1.8 917,446 + MPMX19_04544 0.14 -0.1 917,447 - MPMX19_04544 0.14 +0.6 917,447 - MPMX19_04544 0.14 -1.0 917,509 + MPMX19_04544 0.16 +0.6 917,743 + MPMX19_04544 0.22 -0.5 917,743 + MPMX19_04544 0.22 -0.1 917,743 + MPMX19_04544 0.22 -1.8 917,743 + MPMX19_04544 0.22 +1.2 917,743 + MPMX19_04544 0.22 -1.5 917,743 + MPMX19_04544 0.22 +0.4 917,743 + MPMX19_04544 0.22 +1.0 917,743 + MPMX19_04544 0.22 -0.1 917,743 + MPMX19_04544 0.22 -0.8 917,744 - MPMX19_04544 0.22 +0.1 917,744 - MPMX19_04544 0.22 -1.1 917,744 - MPMX19_04544 0.22 -1.6 917,744 - MPMX19_04544 0.22 +0.3 917,744 - MPMX19_04544 0.22 -0.4 917,744 - MPMX19_04544 0.22 -0.2 917,744 - MPMX19_04544 0.22 -1.9 917,744 - MPMX19_04544 0.22 -0.1 917,744 - MPMX19_04544 0.22 +1.0
Or see this region's nucleotide sequence