Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04540

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04538 and MPMX19_04539 are separated by 92 nucleotidesMPMX19_04539 and MPMX19_04540 overlap by 8 nucleotidesMPMX19_04540 and MPMX19_04541 overlap by 17 nucleotidesMPMX19_04541 and MPMX19_04542 overlap by 4 nucleotides MPMX19_04538: MPMX19_04538 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 911,341 to 912,474 _04538 MPMX19_04539: MPMX19_04539 - High-affinity branched-chain amino acid transport system permease protein LivH, at 912,567 to 913,466 _04539 MPMX19_04540: MPMX19_04540 - hypothetical protein, at 913,459 to 914,358 _04540 MPMX19_04541: MPMX19_04541 - Lipopolysaccharide export system ATP-binding protein LptB, at 914,342 to 915,175 _04541 MPMX19_04542: MPMX19_04542 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 915,172 to 915,897 _04542 Position (kb) 913 914 915Strain fitness (log2 ratio) -2 -1 0 1 2at 912.472 kb on + strandat 912.472 kb on + strandat 912.472 kb on + strandat 912.472 kb on + strandat 912.473 kb on - strandat 912.473 kb on - strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.577 kb on + strandat 912.578 kb on - strandat 912.578 kb on - strandat 912.578 kb on - strandat 912.642 kb on + strandat 912.642 kb on + strandat 912.642 kb on + strandat 913.362 kb on + strand, within MPMX19_04539at 913.362 kb on + strand, within MPMX19_04539at 913.363 kb on - strand, within MPMX19_04539at 913.423 kb on - strandat 913.555 kb on - strand, within MPMX19_04540at 913.714 kb on + strand, within MPMX19_04540at 913.714 kb on + strand, within MPMX19_04540at 913.715 kb on - strand, within MPMX19_04540at 914.056 kb on + strand, within MPMX19_04540at 914.056 kb on + strand, within MPMX19_04540at 914.056 kb on + strand, within MPMX19_04540at 914.056 kb on + strand, within MPMX19_04540at 914.056 kb on + strand, within MPMX19_04540at 914.056 kb on + strand, within MPMX19_04540at 914.056 kb on + strand, within MPMX19_04540at 914.056 kb on + strand, within MPMX19_04540at 914.057 kb on - strand, within MPMX19_04540at 914.057 kb on - strand, within MPMX19_04540at 914.057 kb on - strand, within MPMX19_04540at 914.057 kb on - strand, within MPMX19_04540at 914.057 kb on - strand, within MPMX19_04540at 914.057 kb on - strand, within MPMX19_04540at 914.057 kb on - strand, within MPMX19_04540at 914.057 kb on - strand, within MPMX19_04540at 914.065 kb on + strand, within MPMX19_04540at 914.065 kb on + strand, within MPMX19_04540at 914.065 kb on + strand, within MPMX19_04540at 914.065 kb on + strand, within MPMX19_04540at 914.065 kb on + strand, within MPMX19_04540at 914.066 kb on - strand, within MPMX19_04540at 914.066 kb on - strand, within MPMX19_04540at 914.066 kb on - strand, within MPMX19_04540at 914.194 kb on + strand, within MPMX19_04540at 914.194 kb on + strand, within MPMX19_04540at 914.195 kb on - strand, within MPMX19_04540at 915.077 kb on + strand, within MPMX19_04541at 915.077 kb on + strand, within MPMX19_04541at 915.078 kb on - strand, within MPMX19_04541at 915.205 kb on + strandat 915.205 kb on + strandat 915.205 kb on + strandat 915.206 kb on - strandat 915.206 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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912,472 + -1.6
912,472 + -0.2
912,472 + -1.1
912,472 + -1.8
912,473 - +1.2
912,473 - +0.6
912,559 + +0.3
912,559 + +0.1
912,559 + -0.0
912,559 + -0.1
912,559 + +0.0
912,559 + -1.3
912,559 + -0.3
912,559 + +0.2
912,559 + -1.1
912,559 + -1.3
912,559 + -0.1
912,559 + -0.7
912,559 + +0.0
912,559 + -1.3
912,559 + -0.4
912,559 + +0.9
912,559 + +1.2
912,559 + +0.4
912,559 + +0.4
912,559 + +0.2
912,559 + +0.4
912,560 - +0.4
912,560 - +1.7
912,560 - +1.5
912,560 - -1.0
912,560 - +0.9
912,560 - -0.8
912,560 - -1.1
912,560 - +0.3
912,560 - -0.8
912,560 - -1.0
912,560 - -0.8
912,560 - +0.1
912,560 - -0.8
912,560 - +0.5
912,560 - -0.3
912,560 - -0.6
912,560 - -0.0
912,560 - -1.3
912,560 - +1.0
912,560 - -0.4
912,560 - -0.3
912,560 - -0.8
912,560 - -0.4
912,560 - -1.5
912,560 - +0.5
912,560 - +0.2
912,560 - +0.3
912,577 + +0.4
912,578 - -0.3
912,578 - +0.0
912,578 - -1.1
912,642 + +0.0
912,642 + -1.4
912,642 + -0.6
913,362 + MPMX19_04539 0.88 -1.0
913,362 + MPMX19_04539 0.88 -0.4
913,363 - MPMX19_04539 0.88 +0.4
913,423 - -1.8
913,555 - MPMX19_04540 0.11 -0.6
913,714 + MPMX19_04540 0.28 -1.1
913,714 + MPMX19_04540 0.28 -2.4
913,715 - MPMX19_04540 0.28 -0.8
914,056 + MPMX19_04540 0.66 +0.9
914,056 + MPMX19_04540 0.66 +2.0
914,056 + MPMX19_04540 0.66 -1.6
914,056 + MPMX19_04540 0.66 -1.3
914,056 + MPMX19_04540 0.66 -0.6
914,056 + MPMX19_04540 0.66 -1.5
914,056 + MPMX19_04540 0.66 +1.2
914,056 + MPMX19_04540 0.66 -0.6
914,057 - MPMX19_04540 0.66 -0.1
914,057 - MPMX19_04540 0.66 -0.1
914,057 - MPMX19_04540 0.66 +1.2
914,057 - MPMX19_04540 0.66 -0.4
914,057 - MPMX19_04540 0.66 -0.3
914,057 - MPMX19_04540 0.66 -1.0
914,057 - MPMX19_04540 0.66 +1.2
914,057 - MPMX19_04540 0.66 +0.1
914,065 + MPMX19_04540 0.67 +0.6
914,065 + MPMX19_04540 0.67 -0.3
914,065 + MPMX19_04540 0.67 +0.9
914,065 + MPMX19_04540 0.67 -0.8
914,065 + MPMX19_04540 0.67 -0.8
914,066 - MPMX19_04540 0.67 +0.6
914,066 - MPMX19_04540 0.67 -0.1
914,066 - MPMX19_04540 0.67 -0.9
914,194 + MPMX19_04540 0.82 -0.1
914,194 + MPMX19_04540 0.82 -0.5
914,195 - MPMX19_04540 0.82 -0.3
915,077 + MPMX19_04541 0.88 -1.5
915,077 + MPMX19_04541 0.88 -0.1
915,078 - MPMX19_04541 0.88 -1.0
915,205 + -0.8
915,205 + -0.4
915,205 + -1.1
915,206 - -1.4
915,206 - +0.1

Or see this region's nucleotide sequence