Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04533

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04532 and MPMX19_04533 are separated by 81 nucleotidesMPMX19_04533 and MPMX19_04534 are separated by 45 nucleotides MPMX19_04532: MPMX19_04532 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 903,865 to 906,003 _04532 MPMX19_04533: MPMX19_04533 - HTH-type transcriptional regulator NimR, at 906,085 to 906,906 _04533 MPMX19_04534: MPMX19_04534 - Multidrug export protein MepA, at 906,952 to 908,382 _04534 Position (kb) 906 907Strain fitness (log2 ratio) -2 -1 0 1at 905.309 kb on + strand, within MPMX19_04532at 905.310 kb on - strand, within MPMX19_04532at 905.310 kb on - strand, within MPMX19_04532at 905.344 kb on + strand, within MPMX19_04532at 905.344 kb on + strand, within MPMX19_04532at 905.345 kb on - strand, within MPMX19_04532at 905.609 kb on + strand, within MPMX19_04532at 905.610 kb on - strand, within MPMX19_04532at 905.630 kb on + strand, within MPMX19_04532at 905.630 kb on + strand, within MPMX19_04532at 905.630 kb on + strand, within MPMX19_04532at 905.631 kb on - strand, within MPMX19_04532at 905.631 kb on - strand, within MPMX19_04532at 905.631 kb on - strand, within MPMX19_04532at 905.663 kb on + strand, within MPMX19_04532at 905.663 kb on + strand, within MPMX19_04532at 905.663 kb on + strand, within MPMX19_04532at 905.663 kb on + strand, within MPMX19_04532at 905.663 kb on + strand, within MPMX19_04532at 905.663 kb on + strand, within MPMX19_04532at 905.664 kb on - strand, within MPMX19_04532at 905.664 kb on - strand, within MPMX19_04532at 905.664 kb on - strand, within MPMX19_04532at 905.781 kb on - strand, within MPMX19_04532at 905.781 kb on - strand, within MPMX19_04532at 905.828 kb on + strandat 905.828 kb on + strandat 905.828 kb on + strandat 905.829 kb on - strandat 905.829 kb on - strandat 905.829 kb on - strandat 905.829 kb on - strandat 905.829 kb on - strandat 905.882 kb on + strandat 905.882 kb on + strandat 905.882 kb on + strandat 905.882 kb on + strandat 905.882 kb on + strandat 905.882 kb on + strandat 905.882 kb on + strandat 905.882 kb on + strandat 905.882 kb on + strandat 905.882 kb on + strandat 905.882 kb on + strandat 905.882 kb on + strandat 905.883 kb on - strandat 905.883 kb on - strandat 905.883 kb on - strandat 905.883 kb on - strandat 905.883 kb on - strandat 905.885 kb on + strandat 905.885 kb on + strandat 905.886 kb on - strandat 905.886 kb on - strandat 906.045 kb on + strandat 906.045 kb on + strandat 906.184 kb on + strand, within MPMX19_04533at 906.185 kb on - strand, within MPMX19_04533at 906.185 kb on - strand, within MPMX19_04533at 906.185 kb on - strand, within MPMX19_04533at 906.185 kb on - strand, within MPMX19_04533at 906.361 kb on + strand, within MPMX19_04533at 906.361 kb on + strand, within MPMX19_04533at 906.361 kb on + strand, within MPMX19_04533at 906.362 kb on - strand, within MPMX19_04533at 906.362 kb on - strand, within MPMX19_04533at 906.362 kb on - strand, within MPMX19_04533at 906.362 kb on - strand, within MPMX19_04533at 906.362 kb on - strand, within MPMX19_04533at 906.800 kb on - strand, within MPMX19_04533at 906.862 kb on + strandat 906.862 kb on + strandat 906.862 kb on + strandat 906.862 kb on + strandat 906.862 kb on + strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 907.183 kb on + strand, within MPMX19_04534at 907.183 kb on + strand, within MPMX19_04534at 907.183 kb on + strand, within MPMX19_04534at 907.184 kb on - strand, within MPMX19_04534at 907.184 kb on - strand, within MPMX19_04534at 907.184 kb on - strand, within MPMX19_04534at 907.426 kb on + strand, within MPMX19_04534at 907.426 kb on + strand, within MPMX19_04534at 907.426 kb on + strand, within MPMX19_04534at 907.427 kb on - strand, within MPMX19_04534at 907.427 kb on - strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.862 kb on + strand, within MPMX19_04534at 907.862 kb on + strand, within MPMX19_04534at 907.863 kb on - strand, within MPMX19_04534at 907.863 kb on - strand, within MPMX19_04534at 907.863 kb on - strand, within MPMX19_04534

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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905,309 + MPMX19_04532 0.68 -0.8
905,310 - MPMX19_04532 0.68 +0.6
905,310 - MPMX19_04532 0.68 -0.6
905,344 + MPMX19_04532 0.69 -2.3
905,344 + MPMX19_04532 0.69 -1.4
905,345 - MPMX19_04532 0.69 +0.6
905,609 + MPMX19_04532 0.82 -1.3
905,610 - MPMX19_04532 0.82 -2.1
905,630 + MPMX19_04532 0.83 -0.1
905,630 + MPMX19_04532 0.83 -0.3
905,630 + MPMX19_04532 0.83 +0.3
905,631 - MPMX19_04532 0.83 +0.9
905,631 - MPMX19_04532 0.83 +0.4
905,631 - MPMX19_04532 0.83 +0.6
905,663 + MPMX19_04532 0.84 -0.0
905,663 + MPMX19_04532 0.84 -0.4
905,663 + MPMX19_04532 0.84 -1.1
905,663 + MPMX19_04532 0.84 +0.2
905,663 + MPMX19_04532 0.84 -1.8
905,663 + MPMX19_04532 0.84 +0.0
905,664 - MPMX19_04532 0.84 +0.2
905,664 - MPMX19_04532 0.84 -0.6
905,664 - MPMX19_04532 0.84 -0.1
905,781 - MPMX19_04532 0.90 -0.5
905,781 - MPMX19_04532 0.90 -1.5
905,828 + +0.2
905,828 + +0.4
905,828 + -0.7
905,829 - +0.2
905,829 - +0.9
905,829 - -0.8
905,829 - -1.4
905,829 - -0.1
905,882 + +0.0
905,882 + -0.2
905,882 + +0.6
905,882 + -1.7
905,882 + +1.4
905,882 + -0.3
905,882 + -0.9
905,882 + -0.4
905,882 + +0.3
905,882 + -1.1
905,882 + +0.4
905,882 + -1.3
905,883 - +0.6
905,883 - -1.3
905,883 - -0.1
905,883 - -2.1
905,883 - +0.9
905,885 + +0.1
905,885 + -0.1
905,886 - -0.1
905,886 - +0.0
906,045 + +0.0
906,045 + -0.9
906,184 + MPMX19_04533 0.12 -1.1
906,185 - MPMX19_04533 0.12 -0.1
906,185 - MPMX19_04533 0.12 -0.6
906,185 - MPMX19_04533 0.12 +0.2
906,185 - MPMX19_04533 0.12 -1.1
906,361 + MPMX19_04533 0.34 +1.2
906,361 + MPMX19_04533 0.34 -1.1
906,361 + MPMX19_04533 0.34 -0.6
906,362 - MPMX19_04533 0.34 +0.6
906,362 - MPMX19_04533 0.34 -0.8
906,362 - MPMX19_04533 0.34 -0.4
906,362 - MPMX19_04533 0.34 -0.5
906,362 - MPMX19_04533 0.34 -1.1
906,800 - MPMX19_04533 0.87 +0.4
906,862 + -1.9
906,862 + -0.8
906,862 + -0.0
906,862 + -1.2
906,862 + -0.0
906,863 - +0.4
906,863 - -1.2
906,863 - +0.2
906,863 - +0.1
906,863 - -1.1
906,863 - +0.2
906,863 - -0.8
906,863 - -0.6
906,863 - -1.3
906,863 - -0.1
906,863 - +0.4
906,863 - -0.7
906,863 - -1.3
907,183 + MPMX19_04534 0.16 -0.2
907,183 + MPMX19_04534 0.16 -1.8
907,183 + MPMX19_04534 0.16 -0.1
907,184 - MPMX19_04534 0.16 +0.6
907,184 - MPMX19_04534 0.16 -0.6
907,184 - MPMX19_04534 0.16 +0.9
907,426 + MPMX19_04534 0.33 +0.2
907,426 + MPMX19_04534 0.33 -0.6
907,426 + MPMX19_04534 0.33 -0.7
907,427 - MPMX19_04534 0.33 +0.4
907,427 - MPMX19_04534 0.33 -0.9
907,610 + MPMX19_04534 0.46 +1.4
907,610 + MPMX19_04534 0.46 -1.0
907,610 + MPMX19_04534 0.46 -0.6
907,610 + MPMX19_04534 0.46 +0.6
907,610 + MPMX19_04534 0.46 +0.6
907,610 + MPMX19_04534 0.46 +1.5
907,610 + MPMX19_04534 0.46 -0.3
907,611 - MPMX19_04534 0.46 -0.8
907,611 - MPMX19_04534 0.46 -0.6
907,611 - MPMX19_04534 0.46 +1.7
907,611 - MPMX19_04534 0.46 -1.1
907,611 - MPMX19_04534 0.46 -2.4
907,611 - MPMX19_04534 0.46 -0.6
907,611 - MPMX19_04534 0.46 -0.3
907,611 - MPMX19_04534 0.46 -0.7
907,611 - MPMX19_04534 0.46 -0.4
907,611 - MPMX19_04534 0.46 -1.0
907,611 - MPMX19_04534 0.46 -0.0
907,862 + MPMX19_04534 0.64 +0.8
907,862 + MPMX19_04534 0.64 -0.1
907,863 - MPMX19_04534 0.64 -1.6
907,863 - MPMX19_04534 0.64 -1.0
907,863 - MPMX19_04534 0.64 +0.4

Or see this region's nucleotide sequence