Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04527

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04525 and MPMX19_04526 are separated by 25 nucleotidesMPMX19_04526 and MPMX19_04527 are separated by 21 nucleotidesMPMX19_04527 and MPMX19_04528 are separated by 97 nucleotidesMPMX19_04528 and MPMX19_04529 are separated by 108 nucleotides MPMX19_04525: MPMX19_04525 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 898,394 to 899,461 _04525 MPMX19_04526: MPMX19_04526 - Short-chain-enoyl-CoA hydratase, at 899,487 to 900,320 _04526 MPMX19_04527: MPMX19_04527 - IS5 family transposase IS4811, at 900,342 to 901,292 _04527 MPMX19_04528: MPMX19_04528 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 901,390 to 902,139 _04528 MPMX19_04529: MPMX19_04529 - hypothetical protein, at 902,248 to 902,730 _04529 Position (kb) 900 901 902Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 899.476 kb on + strandat 899.516 kb on + strandat 899.516 kb on + strandat 899.516 kb on + strandat 899.516 kb on + strandat 899.517 kb on - strandat 899.517 kb on - strandat 900.246 kb on + strandat 900.246 kb on + strandat 900.246 kb on + strandat 900.246 kb on + strandat 900.247 kb on - strandat 900.247 kb on - strandat 900.262 kb on - strandat 900.262 kb on - strandat 900.397 kb on + strandat 900.397 kb on + strandat 900.397 kb on + strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.461 kb on - strand, within MPMX19_04527at 900.507 kb on + strand, within MPMX19_04527at 900.508 kb on - strand, within MPMX19_04527at 900.547 kb on + strand, within MPMX19_04527at 900.547 kb on + strand, within MPMX19_04527at 900.547 kb on + strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.756 kb on + strand, within MPMX19_04527at 900.756 kb on + strand, within MPMX19_04527at 900.756 kb on + strand, within MPMX19_04527at 901.171 kb on + strand, within MPMX19_04527at 901.171 kb on + strand, within MPMX19_04527at 901.171 kb on + strand, within MPMX19_04527at 901.171 kb on + strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.331 kb on + strandat 901.331 kb on + strandat 901.332 kb on - strandat 901.333 kb on + strandat 901.334 kb on - strandat 901.354 kb on + strandat 901.354 kb on + strandat 901.354 kb on + strandat 901.354 kb on + strandat 901.354 kb on + strandat 901.354 kb on + strandat 901.354 kb on + strandat 901.355 kb on - strandat 901.355 kb on - strandat 901.355 kb on - strandat 901.355 kb on - strandat 901.355 kb on - strandat 901.355 kb on - strandat 901.355 kb on - strandat 901.355 kb on - strandat 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.969 kb on + strand, within MPMX19_04528at 901.969 kb on + strand, within MPMX19_04528

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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899,476 + -1.3
899,516 + -0.3
899,516 + -0.1
899,516 + +2.2
899,516 + -0.6
899,517 - -0.7
899,517 - -0.8
900,246 + -0.4
900,246 + -0.6
900,246 + -0.6
900,246 + +0.2
900,247 - +0.6
900,247 - +0.4
900,262 - -1.1
900,262 - -2.6
900,397 + +0.1
900,397 + -0.6
900,397 + -3.0
900,398 - +0.6
900,398 - +0.8
900,398 - -0.0
900,398 - -0.4
900,398 - -0.6
900,398 - -0.4
900,398 - -1.0
900,461 - MPMX19_04527 0.13 -0.2
900,507 + MPMX19_04527 0.17 -0.5
900,508 - MPMX19_04527 0.17 +1.2
900,547 + MPMX19_04527 0.22 -2.2
900,547 + MPMX19_04527 0.22 -0.1
900,547 + MPMX19_04527 0.22 -1.7
900,548 - MPMX19_04527 0.22 -0.7
900,548 - MPMX19_04527 0.22 +0.2
900,548 - MPMX19_04527 0.22 -1.3
900,548 - MPMX19_04527 0.22 -0.8
900,548 - MPMX19_04527 0.22 -1.6
900,548 - MPMX19_04527 0.22 -0.7
900,548 - MPMX19_04527 0.22 +0.0
900,548 - MPMX19_04527 0.22 +0.9
900,756 + MPMX19_04527 0.44 -1.1
900,756 + MPMX19_04527 0.44 +0.0
900,756 + MPMX19_04527 0.44 -0.8
901,171 + MPMX19_04527 0.87 -1.3
901,171 + MPMX19_04527 0.87 -0.6
901,171 + MPMX19_04527 0.87 -0.1
901,171 + MPMX19_04527 0.87 -0.0
901,172 - MPMX19_04527 0.87 -0.4
901,172 - MPMX19_04527 0.87 +0.1
901,172 - MPMX19_04527 0.87 -0.9
901,172 - MPMX19_04527 0.87 -1.1
901,172 - MPMX19_04527 0.87 -0.8
901,172 - MPMX19_04527 0.87 -1.2
901,172 - MPMX19_04527 0.87 +0.1
901,331 + +1.2
901,331 + -0.3
901,332 - +0.6
901,333 + +1.0
901,334 - -0.5
901,354 + +0.3
901,354 + -0.4
901,354 + -0.1
901,354 + +0.3
901,354 + +0.7
901,354 + -0.4
901,354 + -0.1
901,355 - +0.0
901,355 - +0.0
901,355 - -0.6
901,355 - +1.2
901,355 - +0.1
901,355 - +0.2
901,355 - -0.0
901,355 - +0.2
901,837 + MPMX19_04528 0.60 -1.0
901,837 + MPMX19_04528 0.60 -2.5
901,837 + MPMX19_04528 0.60 -1.1
901,837 + MPMX19_04528 0.60 -1.0
901,837 + MPMX19_04528 0.60 +1.8
901,837 + MPMX19_04528 0.60 -0.8
901,837 + MPMX19_04528 0.60 -0.3
901,837 + MPMX19_04528 0.60 -1.0
901,837 + MPMX19_04528 0.60 -1.0
901,837 + MPMX19_04528 0.60 -0.3
901,837 + MPMX19_04528 0.60 -1.0
901,837 + MPMX19_04528 0.60 -0.4
901,838 - MPMX19_04528 0.60 -0.5
901,838 - MPMX19_04528 0.60 -0.5
901,838 - MPMX19_04528 0.60 -2.1
901,838 - MPMX19_04528 0.60 +1.4
901,838 - MPMX19_04528 0.60 +0.4
901,838 - MPMX19_04528 0.60 -1.6
901,838 - MPMX19_04528 0.60 -1.5
901,969 + MPMX19_04528 0.77 +0.6
901,969 + MPMX19_04528 0.77 -0.6

Or see this region's nucleotide sequence