Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04497 and MPMX19_04498 are separated by 42 nucleotides MPMX19_04498 and MPMX19_04499 are separated by 85 nucleotides
MPMX19_04497: MPMX19_04497 - hypothetical protein, at 865,340 to 867,106
_04497
MPMX19_04498: MPMX19_04498 - Denitrification regulatory protein NirQ, at 867,149 to 867,949
_04498
MPMX19_04499: MPMX19_04499 - Aliphatic amidase, at 868,035 to 869,075
_04499
Position (kb)
867
868 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 866.206 kb on - strand, within MPMX19_04497 at 866.206 kb on - strand, within MPMX19_04497 at 866.206 kb on - strand, within MPMX19_04497 at 866.221 kb on - strand, within MPMX19_04497 at 866.446 kb on - strand, within MPMX19_04497 at 867.018 kb on + strand at 867.018 kb on + strand at 867.018 kb on + strand at 867.018 kb on + strand at 867.018 kb on + strand at 867.018 kb on + strand at 867.018 kb on + strand at 867.019 kb on - strand at 867.019 kb on - strand at 867.507 kb on + strand, within MPMX19_04498 at 867.507 kb on + strand, within MPMX19_04498 at 867.507 kb on + strand, within MPMX19_04498 at 867.507 kb on + strand, within MPMX19_04498 at 867.507 kb on + strand, within MPMX19_04498 at 867.508 kb on - strand, within MPMX19_04498 at 867.508 kb on - strand, within MPMX19_04498 at 867.508 kb on - strand, within MPMX19_04498 at 867.508 kb on - strand, within MPMX19_04498 at 867.508 kb on - strand, within MPMX19_04498 at 867.645 kb on + strand, within MPMX19_04498 at 867.645 kb on + strand, within MPMX19_04498 at 867.646 kb on - strand, within MPMX19_04498 at 867.799 kb on + strand, within MPMX19_04498 at 867.799 kb on + strand, within MPMX19_04498 at 867.799 kb on + strand, within MPMX19_04498 at 867.799 kb on + strand, within MPMX19_04498 at 867.799 kb on + strand, within MPMX19_04498 at 867.799 kb on + strand, within MPMX19_04498 at 867.799 kb on + strand, within MPMX19_04498 at 867.799 kb on + strand, within MPMX19_04498 at 867.799 kb on + strand, within MPMX19_04498 at 867.799 kb on + strand, within MPMX19_04498 at 867.799 kb on + strand, within MPMX19_04498 at 867.800 kb on - strand, within MPMX19_04498 at 867.800 kb on - strand, within MPMX19_04498 at 867.800 kb on - strand, within MPMX19_04498 at 867.800 kb on - strand, within MPMX19_04498 at 867.800 kb on - strand, within MPMX19_04498 at 867.800 kb on - strand, within MPMX19_04498 at 867.800 kb on - strand, within MPMX19_04498 at 867.800 kb on - strand, within MPMX19_04498 at 867.867 kb on + strand, within MPMX19_04498 at 867.867 kb on + strand, within MPMX19_04498 at 867.867 kb on + strand, within MPMX19_04498 at 867.868 kb on - strand, within MPMX19_04498 at 867.868 kb on - strand, within MPMX19_04498 at 867.909 kb on + strand at 867.909 kb on + strand at 867.909 kb on + strand at 867.910 kb on - strand at 867.910 kb on - strand at 867.912 kb on + strand at 867.912 kb on + strand at 867.912 kb on + strand at 867.912 kb on + strand at 867.912 kb on + strand at 867.913 kb on - strand at 867.913 kb on - strand at 867.963 kb on + strand at 867.963 kb on + strand at 867.963 kb on + strand at 867.963 kb on + strand at 867.963 kb on + strand at 867.963 kb on + strand at 867.963 kb on + strand at 867.964 kb on - strand at 867.964 kb on - strand at 867.986 kb on + strand at 867.986 kb on + strand at 867.987 kb on - strand at 867.987 kb on - strand at 868.162 kb on + strand, within MPMX19_04499 at 868.162 kb on + strand, within MPMX19_04499 at 868.162 kb on + strand, within MPMX19_04499 at 868.162 kb on + strand, within MPMX19_04499 at 868.162 kb on + strand, within MPMX19_04499 at 868.162 kb on + strand, within MPMX19_04499 at 868.162 kb on + strand, within MPMX19_04499 at 868.162 kb on + strand, within MPMX19_04499 at 868.162 kb on + strand, within MPMX19_04499 at 868.162 kb on + strand, within MPMX19_04499 at 868.162 kb on + strand, within MPMX19_04499 at 868.162 kb on + strand, within MPMX19_04499 at 868.162 kb on + strand, within MPMX19_04499 at 868.162 kb on + strand, within MPMX19_04499 at 868.162 kb on + strand, within MPMX19_04499 at 868.163 kb on - strand, within MPMX19_04499 at 868.163 kb on - strand, within MPMX19_04499 at 868.163 kb on - strand, within MPMX19_04499 at 868.163 kb on - strand, within MPMX19_04499 at 868.163 kb on - strand, within MPMX19_04499 at 868.163 kb on - strand, within MPMX19_04499 at 868.163 kb on - strand, within MPMX19_04499 at 868.163 kb on - strand, within MPMX19_04499 at 868.163 kb on - strand, within MPMX19_04499 at 868.163 kb on - strand, within MPMX19_04499 at 868.163 kb on - strand, within MPMX19_04499 at 868.163 kb on - strand, within MPMX19_04499 at 868.163 kb on - strand, within MPMX19_04499 at 868.163 kb on - strand, within MPMX19_04499 at 868.163 kb on - strand, within MPMX19_04499 at 868.163 kb on - strand, within MPMX19_04499 at 868.171 kb on + strand, within MPMX19_04499 at 868.171 kb on + strand, within MPMX19_04499 at 868.225 kb on + strand, within MPMX19_04499 at 868.226 kb on - strand, within MPMX19_04499 at 868.226 kb on - strand, within MPMX19_04499 at 868.312 kb on + strand, within MPMX19_04499 at 868.312 kb on + strand, within MPMX19_04499 at 868.312 kb on + strand, within MPMX19_04499 at 868.312 kb on + strand, within MPMX19_04499 at 868.313 kb on - strand, within MPMX19_04499 at 868.313 kb on - strand, within MPMX19_04499 at 868.313 kb on - strand, within MPMX19_04499 at 868.390 kb on + strand, within MPMX19_04499 at 868.390 kb on + strand, within MPMX19_04499 at 868.390 kb on + strand, within MPMX19_04499 at 868.390 kb on + strand, within MPMX19_04499 at 868.391 kb on - strand, within MPMX19_04499 at 868.391 kb on - strand, within MPMX19_04499 at 868.391 kb on - strand, within MPMX19_04499 at 868.391 kb on - strand, within MPMX19_04499 at 868.391 kb on - strand, within MPMX19_04499 at 868.396 kb on + strand, within MPMX19_04499 at 868.396 kb on + strand, within MPMX19_04499 at 868.396 kb on + strand, within MPMX19_04499 at 868.396 kb on + strand, within MPMX19_04499 at 868.396 kb on + strand, within MPMX19_04499 at 868.397 kb on - strand, within MPMX19_04499 at 868.397 kb on - strand, within MPMX19_04499 at 868.397 kb on - strand, within MPMX19_04499 at 868.397 kb on - strand, within MPMX19_04499 at 868.397 kb on - strand, within MPMX19_04499 at 868.397 kb on - strand, within MPMX19_04499 at 868.397 kb on - strand, within MPMX19_04499 at 868.435 kb on + strand, within MPMX19_04499 at 868.435 kb on + strand, within MPMX19_04499 at 868.435 kb on + strand, within MPMX19_04499 at 868.435 kb on + strand, within MPMX19_04499 at 868.435 kb on + strand, within MPMX19_04499 at 868.436 kb on - strand, within MPMX19_04499 at 868.436 kb on - strand, within MPMX19_04499 at 868.436 kb on - strand, within MPMX19_04499 at 868.436 kb on - strand, within MPMX19_04499 at 868.436 kb on - strand, within MPMX19_04499 at 868.436 kb on - strand, within MPMX19_04499 at 868.436 kb on - strand, within MPMX19_04499 at 868.436 kb on - strand, within MPMX19_04499 at 868.436 kb on - strand, within MPMX19_04499 at 868.436 kb on - strand, within MPMX19_04499 at 868.436 kb on - strand, within MPMX19_04499 at 868.495 kb on + strand, within MPMX19_04499 at 868.495 kb on + strand, within MPMX19_04499 at 868.495 kb on + strand, within MPMX19_04499 at 868.495 kb on + strand, within MPMX19_04499 at 868.495 kb on + strand, within MPMX19_04499 at 868.495 kb on + strand, within MPMX19_04499 at 868.495 kb on + strand, within MPMX19_04499 at 868.495 kb on + strand, within MPMX19_04499 at 868.495 kb on + strand, within MPMX19_04499 at 868.496 kb on - strand, within MPMX19_04499 at 868.496 kb on - strand, within MPMX19_04499 at 868.496 kb on - strand, within MPMX19_04499 at 868.496 kb on - strand, within MPMX19_04499 at 868.496 kb on - strand, within MPMX19_04499 at 868.501 kb on + strand, within MPMX19_04499 at 868.501 kb on + strand, within MPMX19_04499 at 868.501 kb on + strand, within MPMX19_04499 at 868.501 kb on + strand, within MPMX19_04499 at 868.501 kb on + strand, within MPMX19_04499 at 868.501 kb on + strand, within MPMX19_04499 at 868.501 kb on + strand, within MPMX19_04499 at 868.501 kb on + strand, within MPMX19_04499 at 868.501 kb on + strand, within MPMX19_04499 at 868.501 kb on + strand, within MPMX19_04499 at 868.501 kb on + strand, within MPMX19_04499 at 868.502 kb on - strand, within MPMX19_04499 at 868.502 kb on - strand, within MPMX19_04499 at 868.502 kb on - strand, within MPMX19_04499 at 868.502 kb on - strand, within MPMX19_04499 at 868.502 kb on - strand, within MPMX19_04499 at 868.502 kb on - strand, within MPMX19_04499 at 868.502 kb on - strand, within MPMX19_04499 at 868.502 kb on - strand, within MPMX19_04499 at 868.502 kb on - strand, within MPMX19_04499 at 868.502 kb on - strand, within MPMX19_04499 at 868.564 kb on + strand, within MPMX19_04499 at 868.564 kb on + strand, within MPMX19_04499 at 868.564 kb on + strand, within MPMX19_04499 at 868.565 kb on - strand, within MPMX19_04499 at 868.729 kb on + strand, within MPMX19_04499 at 868.729 kb on + strand, within MPMX19_04499 at 868.729 kb on + strand, within MPMX19_04499 at 868.729 kb on + strand, within MPMX19_04499 at 868.729 kb on + strand, within MPMX19_04499 at 868.729 kb on + strand, within MPMX19_04499 at 868.729 kb on + strand, within MPMX19_04499 at 868.729 kb on + strand, within MPMX19_04499 at 868.730 kb on - strand, within MPMX19_04499 at 868.730 kb on - strand, within MPMX19_04499 at 868.730 kb on - strand, within MPMX19_04499 at 868.858 kb on + strand, within MPMX19_04499 at 868.859 kb on - strand, within MPMX19_04499 at 868.876 kb on + strand, within MPMX19_04499 at 868.876 kb on + strand, within MPMX19_04499 at 868.877 kb on - strand, within MPMX19_04499 at 868.877 kb on - strand, within MPMX19_04499 at 868.877 kb on - strand, within MPMX19_04499 at 868.877 kb on - strand, within MPMX19_04499
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 866,206 - MPMX19_04497 0.49 +0.2 866,206 - MPMX19_04497 0.49 +1.6 866,206 - MPMX19_04497 0.49 -0.4 866,221 - MPMX19_04497 0.50 -1.0 866,446 - MPMX19_04497 0.63 +0.2 867,018 + +0.2 867,018 + +1.0 867,018 + +0.2 867,018 + -0.2 867,018 + -0.1 867,018 + -0.4 867,018 + -0.6 867,019 - -1.0 867,019 - -0.4 867,507 + MPMX19_04498 0.45 -0.9 867,507 + MPMX19_04498 0.45 -1.4 867,507 + MPMX19_04498 0.45 +0.4 867,507 + MPMX19_04498 0.45 -1.0 867,507 + MPMX19_04498 0.45 +0.1 867,508 - MPMX19_04498 0.45 -0.1 867,508 - MPMX19_04498 0.45 -1.0 867,508 - MPMX19_04498 0.45 +0.4 867,508 - MPMX19_04498 0.45 -0.1 867,508 - MPMX19_04498 0.45 -2.3 867,645 + MPMX19_04498 0.62 -0.5 867,645 + MPMX19_04498 0.62 -0.8 867,646 - MPMX19_04498 0.62 -0.4 867,799 + MPMX19_04498 0.81 +0.4 867,799 + MPMX19_04498 0.81 -0.6 867,799 + MPMX19_04498 0.81 -1.5 867,799 + MPMX19_04498 0.81 -0.7 867,799 + MPMX19_04498 0.81 -0.8 867,799 + MPMX19_04498 0.81 +0.6 867,799 + MPMX19_04498 0.81 -1.7 867,799 + MPMX19_04498 0.81 -0.8 867,799 + MPMX19_04498 0.81 -1.8 867,799 + MPMX19_04498 0.81 -0.5 867,799 + MPMX19_04498 0.81 -0.2 867,800 - MPMX19_04498 0.81 -1.3 867,800 - MPMX19_04498 0.81 -1.3 867,800 - MPMX19_04498 0.81 +0.2 867,800 - MPMX19_04498 0.81 -0.4 867,800 - MPMX19_04498 0.81 -1.2 867,800 - MPMX19_04498 0.81 -1.4 867,800 - MPMX19_04498 0.81 -0.3 867,800 - MPMX19_04498 0.81 -0.4 867,867 + MPMX19_04498 0.90 -0.4 867,867 + MPMX19_04498 0.90 -1.6 867,867 + MPMX19_04498 0.90 -1.0 867,868 - MPMX19_04498 0.90 +0.0 867,868 - MPMX19_04498 0.90 -0.5 867,909 + -2.5 867,909 + -1.0 867,909 + -1.1 867,910 - -1.8 867,910 - -1.9 867,912 + -0.9 867,912 + +0.5 867,912 + -0.8 867,912 + -0.1 867,912 + -0.3 867,913 - -0.6 867,913 - -0.3 867,963 + +1.0 867,963 + -2.0 867,963 + -1.1 867,963 + -1.4 867,963 + -2.3 867,963 + -1.6 867,963 + +0.6 867,964 - -2.5 867,964 - -0.1 867,986 + -0.8 867,986 + -1.4 867,987 - +0.9 867,987 - -0.4 868,162 + MPMX19_04499 0.12 -0.1 868,162 + MPMX19_04499 0.12 -0.6 868,162 + MPMX19_04499 0.12 -0.5 868,162 + MPMX19_04499 0.12 -0.4 868,162 + MPMX19_04499 0.12 -1.0 868,162 + MPMX19_04499 0.12 -0.6 868,162 + MPMX19_04499 0.12 -1.6 868,162 + MPMX19_04499 0.12 +0.6 868,162 + MPMX19_04499 0.12 +0.8 868,162 + MPMX19_04499 0.12 -2.8 868,162 + MPMX19_04499 0.12 -2.6 868,162 + MPMX19_04499 0.12 -1.3 868,162 + MPMX19_04499 0.12 -0.4 868,162 + MPMX19_04499 0.12 -0.3 868,162 + MPMX19_04499 0.12 -0.5 868,163 - MPMX19_04499 0.12 -0.9 868,163 - MPMX19_04499 0.12 +1.4 868,163 - MPMX19_04499 0.12 -1.1 868,163 - MPMX19_04499 0.12 +1.6 868,163 - MPMX19_04499 0.12 +0.9 868,163 - MPMX19_04499 0.12 -0.3 868,163 - MPMX19_04499 0.12 -1.4 868,163 - MPMX19_04499 0.12 -1.5 868,163 - MPMX19_04499 0.12 +1.6 868,163 - MPMX19_04499 0.12 +0.9 868,163 - MPMX19_04499 0.12 -0.7 868,163 - MPMX19_04499 0.12 +0.2 868,163 - MPMX19_04499 0.12 +0.1 868,163 - MPMX19_04499 0.12 -1.6 868,163 - MPMX19_04499 0.12 +0.4 868,163 - MPMX19_04499 0.12 -1.7 868,171 + MPMX19_04499 0.13 +1.8 868,171 + MPMX19_04499 0.13 -2.6 868,225 + MPMX19_04499 0.18 -1.9 868,226 - MPMX19_04499 0.18 -0.6 868,226 - MPMX19_04499 0.18 -0.6 868,312 + MPMX19_04499 0.27 +1.4 868,312 + MPMX19_04499 0.27 -0.1 868,312 + MPMX19_04499 0.27 -0.1 868,312 + MPMX19_04499 0.27 -2.1 868,313 - MPMX19_04499 0.27 +0.1 868,313 - MPMX19_04499 0.27 -0.2 868,313 - MPMX19_04499 0.27 -0.2 868,390 + MPMX19_04499 0.34 -0.4 868,390 + MPMX19_04499 0.34 -0.4 868,390 + MPMX19_04499 0.34 -1.0 868,390 + MPMX19_04499 0.34 -1.6 868,391 - MPMX19_04499 0.34 +1.2 868,391 - MPMX19_04499 0.34 +0.6 868,391 - MPMX19_04499 0.34 -0.8 868,391 - MPMX19_04499 0.34 -0.5 868,391 - MPMX19_04499 0.34 -1.4 868,396 + MPMX19_04499 0.35 +1.0 868,396 + MPMX19_04499 0.35 -0.3 868,396 + MPMX19_04499 0.35 +0.8 868,396 + MPMX19_04499 0.35 +1.5 868,396 + MPMX19_04499 0.35 +0.6 868,397 - MPMX19_04499 0.35 -0.8 868,397 - MPMX19_04499 0.35 -0.8 868,397 - MPMX19_04499 0.35 -0.6 868,397 - MPMX19_04499 0.35 +0.5 868,397 - MPMX19_04499 0.35 -0.8 868,397 - MPMX19_04499 0.35 -0.1 868,397 - MPMX19_04499 0.35 -0.1 868,435 + MPMX19_04499 0.38 +0.3 868,435 + MPMX19_04499 0.38 -1.8 868,435 + MPMX19_04499 0.38 +0.6 868,435 + MPMX19_04499 0.38 +0.1 868,435 + MPMX19_04499 0.38 -2.4 868,436 - MPMX19_04499 0.39 -0.8 868,436 - MPMX19_04499 0.39 +0.5 868,436 - MPMX19_04499 0.39 -1.0 868,436 - MPMX19_04499 0.39 -0.4 868,436 - MPMX19_04499 0.39 -0.6 868,436 - MPMX19_04499 0.39 +0.9 868,436 - MPMX19_04499 0.39 -0.1 868,436 - MPMX19_04499 0.39 +0.3 868,436 - MPMX19_04499 0.39 +0.4 868,436 - MPMX19_04499 0.39 +0.2 868,436 - MPMX19_04499 0.39 +1.2 868,495 + MPMX19_04499 0.44 -0.9 868,495 + MPMX19_04499 0.44 -0.6 868,495 + MPMX19_04499 0.44 +0.6 868,495 + MPMX19_04499 0.44 -1.4 868,495 + MPMX19_04499 0.44 +2.4 868,495 + MPMX19_04499 0.44 -0.8 868,495 + MPMX19_04499 0.44 -0.8 868,495 + MPMX19_04499 0.44 -0.9 868,495 + MPMX19_04499 0.44 -0.6 868,496 - MPMX19_04499 0.44 -0.4 868,496 - MPMX19_04499 0.44 +0.0 868,496 - MPMX19_04499 0.44 -0.2 868,496 - MPMX19_04499 0.44 -2.5 868,496 - MPMX19_04499 0.44 +0.2 868,501 + MPMX19_04499 0.45 -0.6 868,501 + MPMX19_04499 0.45 +0.1 868,501 + MPMX19_04499 0.45 -1.8 868,501 + MPMX19_04499 0.45 -1.4 868,501 + MPMX19_04499 0.45 -2.1 868,501 + MPMX19_04499 0.45 -2.4 868,501 + MPMX19_04499 0.45 +1.2 868,501 + MPMX19_04499 0.45 -0.1 868,501 + MPMX19_04499 0.45 -0.5 868,501 + MPMX19_04499 0.45 -0.3 868,501 + MPMX19_04499 0.45 -0.1 868,502 - MPMX19_04499 0.45 -1.6 868,502 - MPMX19_04499 0.45 +0.0 868,502 - MPMX19_04499 0.45 -0.1 868,502 - MPMX19_04499 0.45 +0.2 868,502 - MPMX19_04499 0.45 -0.8 868,502 - MPMX19_04499 0.45 -0.3 868,502 - MPMX19_04499 0.45 -1.0 868,502 - MPMX19_04499 0.45 -2.2 868,502 - MPMX19_04499 0.45 -0.1 868,502 - MPMX19_04499 0.45 -0.6 868,564 + MPMX19_04499 0.51 -0.8 868,564 + MPMX19_04499 0.51 +0.2 868,564 + MPMX19_04499 0.51 -0.6 868,565 - MPMX19_04499 0.51 +0.9 868,729 + MPMX19_04499 0.67 -0.8 868,729 + MPMX19_04499 0.67 -0.4 868,729 + MPMX19_04499 0.67 -1.1 868,729 + MPMX19_04499 0.67 -0.1 868,729 + MPMX19_04499 0.67 +0.9 868,729 + MPMX19_04499 0.67 -1.2 868,729 + MPMX19_04499 0.67 +0.7 868,729 + MPMX19_04499 0.67 -0.4 868,730 - MPMX19_04499 0.67 -0.3 868,730 - MPMX19_04499 0.67 -0.8 868,730 - MPMX19_04499 0.67 -2.5 868,858 + MPMX19_04499 0.79 -1.6 868,859 - MPMX19_04499 0.79 -0.5 868,876 + MPMX19_04499 0.81 -1.9 868,876 + MPMX19_04499 0.81 -1.1 868,877 - MPMX19_04499 0.81 -0.3 868,877 - MPMX19_04499 0.81 -1.0 868,877 - MPMX19_04499 0.81 -0.3 868,877 - MPMX19_04499 0.81 -1.7
Or see this region's nucleotide sequence