Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04494 and MPMX19_04495 are separated by 1 nucleotides MPMX19_04495 and MPMX19_04496 overlap by 4 nucleotides
MPMX19_04494: MPMX19_04494 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 862,026 to 862,979
_04494
MPMX19_04495: MPMX19_04495 - hypothetical protein, at 862,981 to 864,207
_04495
MPMX19_04496: MPMX19_04496 - hypothetical protein, at 864,204 to 865,361
_04496
Position (kb)
862
863
864
865 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.299 kb on - strand, within MPMX19_04494 at 862.299 kb on - strand, within MPMX19_04494 at 862.368 kb on + strand, within MPMX19_04494 at 862.368 kb on + strand, within MPMX19_04494 at 862.368 kb on + strand, within MPMX19_04494 at 862.369 kb on - strand, within MPMX19_04494 at 862.369 kb on - strand, within MPMX19_04494 at 862.369 kb on - strand, within MPMX19_04494 at 862.369 kb on - strand, within MPMX19_04494 at 862.380 kb on + strand, within MPMX19_04494 at 862.380 kb on + strand, within MPMX19_04494 at 862.381 kb on - strand, within MPMX19_04494 at 862.381 kb on - strand, within MPMX19_04494 at 862.381 kb on - strand, within MPMX19_04494 at 862.381 kb on - strand, within MPMX19_04494 at 862.381 kb on - strand, within MPMX19_04494 at 862.381 kb on - strand, within MPMX19_04494 at 862.846 kb on - strand, within MPMX19_04494 at 863.365 kb on + strand, within MPMX19_04495 at 863.365 kb on + strand, within MPMX19_04495 at 863.365 kb on + strand, within MPMX19_04495 at 863.366 kb on - strand, within MPMX19_04495 at 863.366 kb on - strand, within MPMX19_04495 at 863.551 kb on + strand, within MPMX19_04495 at 863.551 kb on + strand, within MPMX19_04495 at 863.551 kb on + strand, within MPMX19_04495 at 863.551 kb on + strand, within MPMX19_04495 at 863.620 kb on + strand, within MPMX19_04495 at 863.719 kb on + strand, within MPMX19_04495 at 863.719 kb on + strand, within MPMX19_04495 at 863.720 kb on - strand, within MPMX19_04495 at 863.720 kb on - strand, within MPMX19_04495 at 863.986 kb on + strand, within MPMX19_04495 at 863.986 kb on + strand, within MPMX19_04495 at 863.986 kb on + strand, within MPMX19_04495 at 863.986 kb on + strand, within MPMX19_04495 at 863.987 kb on - strand, within MPMX19_04495 at 864.014 kb on - strand, within MPMX19_04495 at 864.014 kb on - strand, within MPMX19_04495 at 864.014 kb on - strand, within MPMX19_04495 at 864.297 kb on + strand at 864.297 kb on + strand at 864.297 kb on + strand at 864.297 kb on + strand at 864.297 kb on + strand at 864.297 kb on + strand at 864.297 kb on + strand at 864.298 kb on - strand at 864.298 kb on - strand at 864.298 kb on - strand at 864.298 kb on - strand at 864.298 kb on - strand at 864.298 kb on - strand at 864.298 kb on - strand at 864.309 kb on + strand at 864.309 kb on + strand at 864.309 kb on + strand at 864.310 kb on - strand at 864.310 kb on - strand at 864.321 kb on + strand, within MPMX19_04496 at 864.321 kb on + strand, within MPMX19_04496 at 864.322 kb on - strand, within MPMX19_04496 at 864.322 kb on - strand, within MPMX19_04496 at 864.322 kb on - strand, within MPMX19_04496 at 864.322 kb on - strand, within MPMX19_04496 at 864.474 kb on + strand, within MPMX19_04496 at 864.474 kb on + strand, within MPMX19_04496 at 864.474 kb on + strand, within MPMX19_04496 at 864.474 kb on + strand, within MPMX19_04496 at 864.474 kb on + strand, within MPMX19_04496 at 864.474 kb on + strand, within MPMX19_04496 at 864.474 kb on + strand, within MPMX19_04496 at 864.475 kb on - strand, within MPMX19_04496 at 864.475 kb on - strand, within MPMX19_04496 at 864.561 kb on + strand, within MPMX19_04496 at 864.576 kb on + strand, within MPMX19_04496 at 864.576 kb on + strand, within MPMX19_04496 at 864.577 kb on - strand, within MPMX19_04496 at 864.577 kb on - strand, within MPMX19_04496 at 864.577 kb on - strand, within MPMX19_04496 at 864.577 kb on - strand, within MPMX19_04496 at 864.577 kb on - strand, within MPMX19_04496 at 864.577 kb on - strand, within MPMX19_04496 at 864.588 kb on + strand, within MPMX19_04496 at 864.588 kb on + strand, within MPMX19_04496 at 864.588 kb on + strand, within MPMX19_04496 at 864.588 kb on + strand, within MPMX19_04496 at 864.589 kb on - strand, within MPMX19_04496 at 864.589 kb on - strand, within MPMX19_04496 at 864.589 kb on - strand, within MPMX19_04496 at 864.589 kb on - strand, within MPMX19_04496 at 864.589 kb on - strand, within MPMX19_04496 at 864.589 kb on - strand, within MPMX19_04496 at 864.589 kb on - strand, within MPMX19_04496 at 864.750 kb on + strand, within MPMX19_04496 at 864.750 kb on + strand, within MPMX19_04496 at 864.750 kb on + strand, within MPMX19_04496 at 864.751 kb on - strand, within MPMX19_04496 at 864.751 kb on - strand, within MPMX19_04496 at 864.751 kb on - strand, within MPMX19_04496 at 864.751 kb on - strand, within MPMX19_04496 at 864.751 kb on - strand, within MPMX19_04496 at 864.759 kb on + strand, within MPMX19_04496 at 864.759 kb on + strand, within MPMX19_04496 at 864.759 kb on + strand, within MPMX19_04496 at 864.759 kb on + strand, within MPMX19_04496 at 864.759 kb on + strand, within MPMX19_04496 at 864.759 kb on + strand, within MPMX19_04496 at 864.760 kb on - strand, within MPMX19_04496 at 864.760 kb on - strand, within MPMX19_04496 at 864.760 kb on - strand, within MPMX19_04496 at 864.760 kb on - strand, within MPMX19_04496 at 864.760 kb on - strand, within MPMX19_04496 at 864.760 kb on - strand, within MPMX19_04496 at 864.760 kb on - strand, within MPMX19_04496 at 864.760 kb on - strand, within MPMX19_04496 at 864.760 kb on - strand, within MPMX19_04496 at 864.760 kb on - strand, within MPMX19_04496 at 864.885 kb on + strand, within MPMX19_04496 at 864.885 kb on + strand, within MPMX19_04496 at 864.885 kb on + strand, within MPMX19_04496 at 864.885 kb on + strand, within MPMX19_04496 at 864.885 kb on + strand, within MPMX19_04496 at 864.885 kb on + strand, within MPMX19_04496 at 864.885 kb on + strand, within MPMX19_04496 at 864.885 kb on + strand, within MPMX19_04496 at 864.885 kb on + strand, within MPMX19_04496 at 864.885 kb on + strand, within MPMX19_04496 at 864.885 kb on + strand, within MPMX19_04496 at 864.885 kb on + strand, within MPMX19_04496 at 864.885 kb on + strand, within MPMX19_04496 at 864.886 kb on - strand, within MPMX19_04496 at 864.886 kb on - strand, within MPMX19_04496 at 864.886 kb on - strand, within MPMX19_04496 at 864.886 kb on - strand, within MPMX19_04496 at 864.886 kb on - strand, within MPMX19_04496 at 864.886 kb on - strand, within MPMX19_04496 at 864.886 kb on - strand, within MPMX19_04496 at 864.886 kb on - strand, within MPMX19_04496 at 864.886 kb on - strand, within MPMX19_04496 at 864.886 kb on - strand, within MPMX19_04496 at 864.886 kb on - strand, within MPMX19_04496 at 864.886 kb on - strand, within MPMX19_04496 at 864.886 kb on - strand, within MPMX19_04496 at 864.886 kb on - strand, within MPMX19_04496 at 864.886 kb on - strand, within MPMX19_04496 at 864.886 kb on - strand, within MPMX19_04496 at 864.886 kb on - strand, within MPMX19_04496 at 864.894 kb on + strand, within MPMX19_04496 at 864.894 kb on + strand, within MPMX19_04496 at 864.894 kb on + strand, within MPMX19_04496 at 864.894 kb on + strand, within MPMX19_04496 at 864.894 kb on + strand, within MPMX19_04496 at 864.894 kb on + strand, within MPMX19_04496 at 864.894 kb on + strand, within MPMX19_04496 at 864.894 kb on + strand, within MPMX19_04496 at 864.894 kb on + strand, within MPMX19_04496 at 864.894 kb on + strand, within MPMX19_04496 at 864.894 kb on + strand, within MPMX19_04496 at 864.894 kb on + strand, within MPMX19_04496 at 864.894 kb on + strand, within MPMX19_04496 at 864.894 kb on + strand, within MPMX19_04496 at 864.894 kb on + strand, within MPMX19_04496 at 864.894 kb on + strand, within MPMX19_04496 at 864.895 kb on - strand, within MPMX19_04496 at 864.895 kb on - strand, within MPMX19_04496 at 864.895 kb on - strand, within MPMX19_04496 at 864.895 kb on - strand, within MPMX19_04496 at 864.895 kb on - strand, within MPMX19_04496 at 864.895 kb on - strand, within MPMX19_04496 at 864.895 kb on - strand, within MPMX19_04496 at 864.895 kb on - strand, within MPMX19_04496 at 864.895 kb on - strand, within MPMX19_04496 at 864.895 kb on - strand, within MPMX19_04496 at 864.895 kb on - strand, within MPMX19_04496 at 864.927 kb on + strand, within MPMX19_04496 at 864.927 kb on + strand, within MPMX19_04496 at 864.927 kb on + strand, within MPMX19_04496 at 864.927 kb on + strand, within MPMX19_04496 at 864.927 kb on + strand, within MPMX19_04496 at 864.927 kb on + strand, within MPMX19_04496 at 864.927 kb on + strand, within MPMX19_04496 at 864.927 kb on + strand, within MPMX19_04496 at 864.927 kb on + strand, within MPMX19_04496 at 864.927 kb on + strand, within MPMX19_04496 at 864.927 kb on + strand, within MPMX19_04496 at 864.927 kb on + strand, within MPMX19_04496 at 864.927 kb on + strand, within MPMX19_04496 at 864.928 kb on - strand, within MPMX19_04496 at 864.928 kb on - strand, within MPMX19_04496 at 864.928 kb on - strand, within MPMX19_04496 at 864.928 kb on - strand, within MPMX19_04496 at 864.928 kb on - strand, within MPMX19_04496 at 864.928 kb on - strand, within MPMX19_04496 at 864.928 kb on - strand, within MPMX19_04496 at 864.928 kb on - strand, within MPMX19_04496 at 864.928 kb on - strand, within MPMX19_04496 at 864.928 kb on - strand, within MPMX19_04496 at 864.945 kb on + strand, within MPMX19_04496 at 864.945 kb on + strand, within MPMX19_04496 at 864.946 kb on - strand, within MPMX19_04496 at 864.946 kb on - strand, within MPMX19_04496 at 864.946 kb on - strand, within MPMX19_04496 at 864.951 kb on + strand, within MPMX19_04496 at 864.951 kb on + strand, within MPMX19_04496 at 864.951 kb on + strand, within MPMX19_04496 at 864.952 kb on - strand, within MPMX19_04496 at 864.952 kb on - strand, within MPMX19_04496 at 864.952 kb on - strand, within MPMX19_04496
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 862,298 + MPMX19_04494 0.29 -0.4 862,298 + MPMX19_04494 0.29 -0.7 862,298 + MPMX19_04494 0.29 +0.6 862,298 + MPMX19_04494 0.29 +0.2 862,298 + MPMX19_04494 0.29 -0.6 862,298 + MPMX19_04494 0.29 -1.3 862,298 + MPMX19_04494 0.29 -0.6 862,298 + MPMX19_04494 0.29 +0.9 862,298 + MPMX19_04494 0.29 -0.5 862,299 - MPMX19_04494 0.29 -0.6 862,299 - MPMX19_04494 0.29 -0.6 862,368 + MPMX19_04494 0.36 +0.9 862,368 + MPMX19_04494 0.36 -1.4 862,368 + MPMX19_04494 0.36 -0.8 862,369 - MPMX19_04494 0.36 +1.0 862,369 - MPMX19_04494 0.36 -0.4 862,369 - MPMX19_04494 0.36 +0.2 862,369 - MPMX19_04494 0.36 +0.6 862,380 + MPMX19_04494 0.37 -0.6 862,380 + MPMX19_04494 0.37 -2.3 862,381 - MPMX19_04494 0.37 -0.5 862,381 - MPMX19_04494 0.37 +1.2 862,381 - MPMX19_04494 0.37 -0.6 862,381 - MPMX19_04494 0.37 +0.9 862,381 - MPMX19_04494 0.37 +0.6 862,381 - MPMX19_04494 0.37 +0.4 862,846 - MPMX19_04494 0.86 -1.6 863,365 + MPMX19_04495 0.31 -1.5 863,365 + MPMX19_04495 0.31 -0.1 863,365 + MPMX19_04495 0.31 -0.4 863,366 - MPMX19_04495 0.31 -0.4 863,366 - MPMX19_04495 0.31 +0.6 863,551 + MPMX19_04495 0.46 -0.6 863,551 + MPMX19_04495 0.46 -0.1 863,551 + MPMX19_04495 0.46 -0.3 863,551 + MPMX19_04495 0.46 -0.4 863,620 + MPMX19_04495 0.52 -0.1 863,719 + MPMX19_04495 0.60 -1.3 863,719 + MPMX19_04495 0.60 -0.8 863,720 - MPMX19_04495 0.60 -2.5 863,720 - MPMX19_04495 0.60 +0.1 863,986 + MPMX19_04495 0.82 -0.6 863,986 + MPMX19_04495 0.82 -1.1 863,986 + MPMX19_04495 0.82 -0.6 863,986 + MPMX19_04495 0.82 -0.7 863,987 - MPMX19_04495 0.82 -0.0 864,014 - MPMX19_04495 0.84 +0.2 864,014 - MPMX19_04495 0.84 -1.1 864,014 - MPMX19_04495 0.84 -1.4 864,297 + -0.6 864,297 + -0.6 864,297 + -1.8 864,297 + +1.2 864,297 + -2.1 864,297 + +0.9 864,297 + +0.9 864,298 - +0.1 864,298 - +0.7 864,298 - -0.4 864,298 - -0.1 864,298 - -0.5 864,298 - +0.4 864,298 - +0.4 864,309 + +0.3 864,309 + -0.8 864,309 + +0.4 864,310 - +0.4 864,310 - -1.7 864,321 + MPMX19_04496 0.10 -1.4 864,321 + MPMX19_04496 0.10 -1.0 864,322 - MPMX19_04496 0.10 +0.0 864,322 - MPMX19_04496 0.10 -1.6 864,322 - MPMX19_04496 0.10 -0.1 864,322 - MPMX19_04496 0.10 -0.2 864,474 + MPMX19_04496 0.23 -2.0 864,474 + MPMX19_04496 0.23 +0.2 864,474 + MPMX19_04496 0.23 -0.3 864,474 + MPMX19_04496 0.23 +0.1 864,474 + MPMX19_04496 0.23 -1.3 864,474 + MPMX19_04496 0.23 +0.9 864,474 + MPMX19_04496 0.23 -2.0 864,475 - MPMX19_04496 0.23 -0.6 864,475 - MPMX19_04496 0.23 -0.3 864,561 + MPMX19_04496 0.31 +0.4 864,576 + MPMX19_04496 0.32 +0.7 864,576 + MPMX19_04496 0.32 +0.0 864,577 - MPMX19_04496 0.32 -0.7 864,577 - MPMX19_04496 0.32 -0.3 864,577 - MPMX19_04496 0.32 -1.6 864,577 - MPMX19_04496 0.32 -2.3 864,577 - MPMX19_04496 0.32 -0.1 864,577 - MPMX19_04496 0.32 -0.8 864,588 + MPMX19_04496 0.33 -0.4 864,588 + MPMX19_04496 0.33 -0.9 864,588 + MPMX19_04496 0.33 -1.9 864,588 + MPMX19_04496 0.33 -0.8 864,589 - MPMX19_04496 0.33 -0.2 864,589 - MPMX19_04496 0.33 -1.4 864,589 - MPMX19_04496 0.33 -0.7 864,589 - MPMX19_04496 0.33 +0.3 864,589 - MPMX19_04496 0.33 -0.1 864,589 - MPMX19_04496 0.33 -1.0 864,589 - MPMX19_04496 0.33 +0.0 864,750 + MPMX19_04496 0.47 -1.5 864,750 + MPMX19_04496 0.47 -0.8 864,750 + MPMX19_04496 0.47 +2.6 864,751 - MPMX19_04496 0.47 -0.1 864,751 - MPMX19_04496 0.47 +0.7 864,751 - MPMX19_04496 0.47 +0.6 864,751 - MPMX19_04496 0.47 +0.5 864,751 - MPMX19_04496 0.47 -0.1 864,759 + MPMX19_04496 0.48 -0.1 864,759 + MPMX19_04496 0.48 -1.2 864,759 + MPMX19_04496 0.48 -0.4 864,759 + MPMX19_04496 0.48 -1.3 864,759 + MPMX19_04496 0.48 -0.0 864,759 + MPMX19_04496 0.48 -0.1 864,760 - MPMX19_04496 0.48 -1.3 864,760 - MPMX19_04496 0.48 -1.1 864,760 - MPMX19_04496 0.48 +0.7 864,760 - MPMX19_04496 0.48 -0.0 864,760 - MPMX19_04496 0.48 -0.6 864,760 - MPMX19_04496 0.48 +0.2 864,760 - MPMX19_04496 0.48 +0.3 864,760 - MPMX19_04496 0.48 +1.2 864,760 - MPMX19_04496 0.48 +0.2 864,760 - MPMX19_04496 0.48 -0.1 864,885 + MPMX19_04496 0.59 +0.8 864,885 + MPMX19_04496 0.59 -0.6 864,885 + MPMX19_04496 0.59 +0.0 864,885 + MPMX19_04496 0.59 -0.4 864,885 + MPMX19_04496 0.59 -1.8 864,885 + MPMX19_04496 0.59 -1.3 864,885 + MPMX19_04496 0.59 -1.4 864,885 + MPMX19_04496 0.59 -1.0 864,885 + MPMX19_04496 0.59 -0.4 864,885 + MPMX19_04496 0.59 -0.1 864,885 + MPMX19_04496 0.59 +0.6 864,885 + MPMX19_04496 0.59 -0.5 864,885 + MPMX19_04496 0.59 -1.0 864,886 - MPMX19_04496 0.59 -0.1 864,886 - MPMX19_04496 0.59 -1.5 864,886 - MPMX19_04496 0.59 -0.9 864,886 - MPMX19_04496 0.59 -1.0 864,886 - MPMX19_04496 0.59 -0.3 864,886 - MPMX19_04496 0.59 -0.8 864,886 - MPMX19_04496 0.59 -1.4 864,886 - MPMX19_04496 0.59 -1.8 864,886 - MPMX19_04496 0.59 -2.0 864,886 - MPMX19_04496 0.59 +0.7 864,886 - MPMX19_04496 0.59 +0.2 864,886 - MPMX19_04496 0.59 -0.6 864,886 - MPMX19_04496 0.59 +1.0 864,886 - MPMX19_04496 0.59 -0.6 864,886 - MPMX19_04496 0.59 -0.4 864,886 - MPMX19_04496 0.59 -0.6 864,886 - MPMX19_04496 0.59 -1.0 864,894 + MPMX19_04496 0.60 -0.3 864,894 + MPMX19_04496 0.60 +0.2 864,894 + MPMX19_04496 0.60 -0.1 864,894 + MPMX19_04496 0.60 +1.8 864,894 + MPMX19_04496 0.60 -0.9 864,894 + MPMX19_04496 0.60 -0.4 864,894 + MPMX19_04496 0.60 -1.5 864,894 + MPMX19_04496 0.60 +0.4 864,894 + MPMX19_04496 0.60 -0.5 864,894 + MPMX19_04496 0.60 +1.5 864,894 + MPMX19_04496 0.60 +0.2 864,894 + MPMX19_04496 0.60 +1.6 864,894 + MPMX19_04496 0.60 -0.1 864,894 + MPMX19_04496 0.60 +0.0 864,894 + MPMX19_04496 0.60 +0.6 864,894 + MPMX19_04496 0.60 -0.9 864,895 - MPMX19_04496 0.60 +0.2 864,895 - MPMX19_04496 0.60 -1.7 864,895 - MPMX19_04496 0.60 +0.4 864,895 - MPMX19_04496 0.60 -1.3 864,895 - MPMX19_04496 0.60 -1.4 864,895 - MPMX19_04496 0.60 -0.3 864,895 - MPMX19_04496 0.60 +0.4 864,895 - MPMX19_04496 0.60 +1.2 864,895 - MPMX19_04496 0.60 +1.0 864,895 - MPMX19_04496 0.60 -0.7 864,895 - MPMX19_04496 0.60 -0.4 864,927 + MPMX19_04496 0.62 +0.7 864,927 + MPMX19_04496 0.62 +1.4 864,927 + MPMX19_04496 0.62 -0.9 864,927 + MPMX19_04496 0.62 +1.4 864,927 + MPMX19_04496 0.62 -0.1 864,927 + MPMX19_04496 0.62 -0.8 864,927 + MPMX19_04496 0.62 -1.5 864,927 + MPMX19_04496 0.62 -0.1 864,927 + MPMX19_04496 0.62 -0.1 864,927 + MPMX19_04496 0.62 +0.3 864,927 + MPMX19_04496 0.62 -1.6 864,927 + MPMX19_04496 0.62 -1.5 864,927 + MPMX19_04496 0.62 +0.4 864,928 - MPMX19_04496 0.63 -0.1 864,928 - MPMX19_04496 0.63 +2.2 864,928 - MPMX19_04496 0.63 -2.6 864,928 - MPMX19_04496 0.63 -0.5 864,928 - MPMX19_04496 0.63 -1.3 864,928 - MPMX19_04496 0.63 +0.7 864,928 - MPMX19_04496 0.63 -0.8 864,928 - MPMX19_04496 0.63 -1.0 864,928 - MPMX19_04496 0.63 -1.5 864,928 - MPMX19_04496 0.63 -1.4 864,945 + MPMX19_04496 0.64 -2.8 864,945 + MPMX19_04496 0.64 -0.1 864,946 - MPMX19_04496 0.64 -2.0 864,946 - MPMX19_04496 0.64 +1.0 864,946 - MPMX19_04496 0.64 +0.6 864,951 + MPMX19_04496 0.65 -0.3 864,951 + MPMX19_04496 0.65 +0.9 864,951 + MPMX19_04496 0.65 +0.1 864,952 - MPMX19_04496 0.65 +0.4 864,952 - MPMX19_04496 0.65 -0.1 864,952 - MPMX19_04496 0.65 +0.0
Or see this region's nucleotide sequence