Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04483 and MPMX19_04484 are separated by 105 nucleotides MPMX19_04484 and MPMX19_04485 are separated by 33 nucleotides MPMX19_04485 and MPMX19_04486 are separated by 80 nucleotides MPMX19_04486 and MPMX19_04487 overlap by 14 nucleotides
MPMX19_04483: MPMX19_04483 - N-alpha-acetyl-L-2,4-diaminobutyric acid deacetylase, at 850,803 to 851,837
_04483
MPMX19_04484: MPMX19_04484 - 2-iminobutanoate/2-iminopropanoate deaminase, at 851,943 to 852,287
_04484
MPMX19_04485: MPMX19_04485 - ABC transporter glutamine-binding protein GlnH, at 852,321 to 853,121
_04485
MPMX19_04486: MPMX19_04486 - Glutamine transport ATP-binding protein GlnQ, at 853,202 to 853,930
_04486
MPMX19_04487: MPMX19_04487 - L-cystine transport system permease protein YecS, at 853,917 to 854,567
_04487
Position (kb) 852
853
854 Strain fitness (log2 ratio) -2
-1
0
1
2 at 851.656 kb on + strand, within MPMX19_04483 at 851.656 kb on + strand, within MPMX19_04483 at 851.656 kb on + strand, within MPMX19_04483 at 851.656 kb on + strand, within MPMX19_04483 at 851.656 kb on + strand, within MPMX19_04483 at 851.657 kb on - strand, within MPMX19_04483 at 851.657 kb on - strand, within MPMX19_04483 at 851.740 kb on + strand at 851.741 kb on - strand at 851.741 kb on - strand at 851.741 kb on - strand at 851.741 kb on - strand at 851.743 kb on + strand at 851.744 kb on - strand at 851.744 kb on - strand at 851.744 kb on - strand at 851.744 kb on - strand at 851.821 kb on + strand at 851.822 kb on - strand at 851.822 kb on - strand at 851.944 kb on + strand at 851.944 kb on + strand at 851.944 kb on + strand at 851.945 kb on - strand at 851.945 kb on - strand at 851.945 kb on - strand at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.322 kb on + strand at 852.322 kb on + strand at 852.322 kb on + strand at 852.322 kb on + strand at 852.323 kb on - strand at 852.323 kb on - strand at 852.323 kb on - strand at 852.323 kb on - strand at 852.398 kb on - strand at 852.398 kb on - strand at 852.574 kb on + strand, within MPMX19_04485 at 852.574 kb on + strand, within MPMX19_04485 at 852.574 kb on + strand, within MPMX19_04485 at 852.574 kb on + strand, within MPMX19_04485 at 852.575 kb on - strand, within MPMX19_04485 at 852.733 kb on + strand, within MPMX19_04485 at 852.733 kb on + strand, within MPMX19_04485 at 852.733 kb on + strand, within MPMX19_04485 at 852.733 kb on + strand, within MPMX19_04485 at 852.733 kb on + strand, within MPMX19_04485 at 852.734 kb on - strand, within MPMX19_04485 at 852.734 kb on - strand, within MPMX19_04485 at 852.757 kb on + strand, within MPMX19_04485 at 852.757 kb on + strand, within MPMX19_04485 at 852.757 kb on + strand, within MPMX19_04485 at 852.757 kb on + strand, within MPMX19_04485 at 852.757 kb on + strand, within MPMX19_04485 at 852.758 kb on - strand, within MPMX19_04485 at 852.758 kb on - strand, within MPMX19_04485 at 853.527 kb on + strand, within MPMX19_04486 at 853.893 kb on + strand at 853.893 kb on + strand at 853.893 kb on + strand at 853.893 kb on + strand at 853.893 kb on + strand at 853.893 kb on + strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.903 kb on + strand at 853.903 kb on + strand at 853.987 kb on + strand, within MPMX19_04487 at 853.987 kb on + strand, within MPMX19_04487 at 853.987 kb on + strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 854.008 kb on + strand, within MPMX19_04487 at 854.008 kb on + strand, within MPMX19_04487 at 854.009 kb on - strand, within MPMX19_04487
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 851,656 + MPMX19_04483 0.82 -0.1 851,656 + MPMX19_04483 0.82 +1.0 851,656 + MPMX19_04483 0.82 -1.1 851,656 + MPMX19_04483 0.82 -2.1 851,656 + MPMX19_04483 0.82 -0.0 851,657 - MPMX19_04483 0.83 +0.1 851,657 - MPMX19_04483 0.83 -2.0 851,740 + +0.3 851,741 - -1.3 851,741 - -0.1 851,741 - -1.0 851,741 - -0.8 851,743 + -1.1 851,744 - -1.2 851,744 - -0.8 851,744 - -1.0 851,744 - -0.3 851,821 + -0.2 851,822 - -0.0 851,822 - -0.4 851,944 + +0.4 851,944 + -1.5 851,944 + +1.6 851,945 - +0.3 851,945 - -0.0 851,945 - -1.2 852,049 + MPMX19_04484 0.31 -0.1 852,049 + MPMX19_04484 0.31 +0.0 852,049 + MPMX19_04484 0.31 +1.0 852,049 + MPMX19_04484 0.31 -0.4 852,049 + MPMX19_04484 0.31 -0.1 852,049 + MPMX19_04484 0.31 -0.6 852,049 + MPMX19_04484 0.31 -0.6 852,049 + MPMX19_04484 0.31 +0.6 852,049 + MPMX19_04484 0.31 +0.0 852,049 + MPMX19_04484 0.31 -0.3 852,050 - MPMX19_04484 0.31 +1.2 852,050 - MPMX19_04484 0.31 +0.8 852,050 - MPMX19_04484 0.31 -1.5 852,050 - MPMX19_04484 0.31 -0.5 852,050 - MPMX19_04484 0.31 -1.0 852,050 - MPMX19_04484 0.31 -1.1 852,050 - MPMX19_04484 0.31 -1.1 852,050 - MPMX19_04484 0.31 -1.0 852,050 - MPMX19_04484 0.31 -2.4 852,050 - MPMX19_04484 0.31 +0.1 852,050 - MPMX19_04484 0.31 +0.2 852,322 + -1.0 852,322 + -0.9 852,322 + +0.4 852,322 + -0.1 852,323 - -1.4 852,323 - +0.7 852,323 - -1.0 852,323 - +0.4 852,398 - -1.9 852,398 - -1.0 852,574 + MPMX19_04485 0.32 -0.4 852,574 + MPMX19_04485 0.32 -0.4 852,574 + MPMX19_04485 0.32 -1.6 852,574 + MPMX19_04485 0.32 -1.1 852,575 - MPMX19_04485 0.32 -1.3 852,733 + MPMX19_04485 0.51 -0.4 852,733 + MPMX19_04485 0.51 -2.1 852,733 + MPMX19_04485 0.51 -0.6 852,733 + MPMX19_04485 0.51 +1.0 852,733 + MPMX19_04485 0.51 -0.1 852,734 - MPMX19_04485 0.52 -0.3 852,734 - MPMX19_04485 0.52 +0.2 852,757 + MPMX19_04485 0.54 -0.3 852,757 + MPMX19_04485 0.54 -1.5 852,757 + MPMX19_04485 0.54 +0.6 852,757 + MPMX19_04485 0.54 -0.6 852,757 + MPMX19_04485 0.54 -0.6 852,758 - MPMX19_04485 0.55 +1.4 852,758 - MPMX19_04485 0.55 -0.4 853,527 + MPMX19_04486 0.45 -0.8 853,893 + -0.4 853,893 + -1.6 853,893 + +1.8 853,893 + -0.8 853,893 + -0.8 853,893 + -1.3 853,894 - +0.2 853,894 - +0.1 853,894 - +1.4 853,894 - +0.7 853,894 - -0.1 853,894 - -1.5 853,894 - -0.5 853,894 - -0.4 853,894 - -2.0 853,894 - +0.7 853,903 + -0.4 853,903 + -1.3 853,987 + MPMX19_04487 0.11 +0.2 853,987 + MPMX19_04487 0.11 -1.3 853,987 + MPMX19_04487 0.11 -0.4 853,988 - MPMX19_04487 0.11 -0.5 853,988 - MPMX19_04487 0.11 -0.8 853,988 - MPMX19_04487 0.11 -0.8 853,988 - MPMX19_04487 0.11 -1.3 853,988 - MPMX19_04487 0.11 -1.0 853,988 - MPMX19_04487 0.11 -1.4 853,988 - MPMX19_04487 0.11 -1.4 854,008 + MPMX19_04487 0.14 +0.5 854,008 + MPMX19_04487 0.14 -1.1 854,009 - MPMX19_04487 0.14 -0.6
Or see this region's nucleotide sequence