Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04472 and MPMX19_04473 are separated by 78 nucleotides MPMX19_04473 and MPMX19_04474 are separated by 234 nucleotides MPMX19_04474 and MPMX19_04475 are separated by 228 nucleotides
MPMX19_04472: MPMX19_04472 - Glutamine--fructose-6-phosphate aminotransferase [isomerizing], at 838,655 to 840,481
_04472
MPMX19_04473: MPMX19_04473 - IS481 family transposase ISBxe4, at 840,560 to 841,462
_04473
MPMX19_04474: MPMX19_04474 - hypothetical protein, at 841,697 to 842,059
_04474
MPMX19_04475: MPMX19_04475 - IS701 family transposase ISPye15, at 842,288 to 843,532
_04475
Position (kb) 840
841
842 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 840.479 kb on + strand at 840.479 kb on + strand at 840.480 kb on - strand at 840.480 kb on - strand at 840.480 kb on - strand at 840.480 kb on - strand at 840.512 kb on + strand at 840.523 kb on - strand at 840.523 kb on - strand at 840.536 kb on + strand at 840.536 kb on + strand at 840.536 kb on + strand at 840.536 kb on + strand at 840.536 kb on + strand at 840.537 kb on - strand at 840.537 kb on - strand at 840.537 kb on - strand at 840.537 kb on - strand at 840.537 kb on - strand at 840.537 kb on - strand at 840.554 kb on + strand at 840.554 kb on + strand at 840.555 kb on - strand at 840.555 kb on - strand at 840.561 kb on + strand at 840.561 kb on + strand at 840.561 kb on + strand at 840.561 kb on + strand at 840.562 kb on - strand at 840.562 kb on - strand at 840.562 kb on - strand at 840.583 kb on + strand at 840.583 kb on + strand at 840.583 kb on + strand at 840.583 kb on + strand at 840.583 kb on + strand at 840.583 kb on + strand at 840.584 kb on - strand at 840.584 kb on - strand at 840.584 kb on - strand at 840.584 kb on - strand at 840.588 kb on + strand at 840.588 kb on + strand at 840.588 kb on + strand at 840.588 kb on + strand at 840.589 kb on - strand at 840.628 kb on + strand at 840.690 kb on + strand, within MPMX19_04473 at 840.691 kb on - strand, within MPMX19_04473 at 840.786 kb on + strand, within MPMX19_04473 at 840.786 kb on + strand, within MPMX19_04473 at 840.786 kb on + strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.798 kb on + strand, within MPMX19_04473 at 840.798 kb on + strand, within MPMX19_04473 at 840.798 kb on + strand, within MPMX19_04473 at 840.799 kb on - strand, within MPMX19_04473 at 840.799 kb on - strand, within MPMX19_04473 at 840.799 kb on - strand, within MPMX19_04473 at 840.810 kb on - strand, within MPMX19_04473 at 840.810 kb on - strand, within MPMX19_04473 at 840.838 kb on + strand, within MPMX19_04473 at 840.838 kb on + strand, within MPMX19_04473 at 840.838 kb on + strand, within MPMX19_04473 at 840.838 kb on + strand, within MPMX19_04473 at 840.839 kb on - strand, within MPMX19_04473 at 840.839 kb on - strand, within MPMX19_04473 at 840.839 kb on - strand, within MPMX19_04473 at 840.839 kb on - strand, within MPMX19_04473 at 840.909 kb on + strand, within MPMX19_04473 at 840.909 kb on + strand, within MPMX19_04473 at 840.909 kb on + strand, within MPMX19_04473 at 840.909 kb on + strand, within MPMX19_04473 at 840.909 kb on + strand, within MPMX19_04473 at 840.909 kb on + strand, within MPMX19_04473 at 840.910 kb on - strand, within MPMX19_04473 at 840.910 kb on - strand, within MPMX19_04473 at 840.910 kb on - strand, within MPMX19_04473 at 841.086 kb on - strand, within MPMX19_04473 at 841.086 kb on - strand, within MPMX19_04473 at 841.086 kb on - strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.123 kb on - strand, within MPMX19_04473 at 841.123 kb on - strand, within MPMX19_04473 at 841.123 kb on - strand, within MPMX19_04473 at 841.123 kb on - strand, within MPMX19_04473 at 841.129 kb on - strand, within MPMX19_04473 at 841.129 kb on - strand, within MPMX19_04473 at 841.181 kb on - strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.207 kb on - strand, within MPMX19_04473 at 841.207 kb on - strand, within MPMX19_04473 at 841.207 kb on - strand, within MPMX19_04473 at 841.207 kb on - strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.294 kb on - strand, within MPMX19_04473 at 841.294 kb on - strand, within MPMX19_04473 at 841.294 kb on - strand, within MPMX19_04473 at 841.501 kb on + strand at 841.502 kb on - strand at 841.591 kb on + strand at 841.591 kb on + strand at 841.591 kb on + strand at 841.591 kb on + strand at 841.591 kb on + strand at 841.591 kb on + strand at 841.592 kb on - strand at 841.592 kb on - strand at 841.649 kb on - strand at 841.649 kb on - strand at 841.649 kb on - strand at 841.649 kb on - strand at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.799 kb on - strand, within MPMX19_04474 at 841.799 kb on - strand, within MPMX19_04474 at 841.799 kb on - strand, within MPMX19_04474 at 841.799 kb on - strand, within MPMX19_04474 at 841.799 kb on - strand, within MPMX19_04474 at 841.825 kb on - strand, within MPMX19_04474 at 841.879 kb on + strand, within MPMX19_04474 at 841.880 kb on - strand, within MPMX19_04474 at 841.964 kb on + strand, within MPMX19_04474 at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.049 kb on - strand at 842.049 kb on - strand at 842.049 kb on - strand at 842.049 kb on - strand at 842.049 kb on - strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.106 kb on + strand at 842.106 kb on + strand at 842.106 kb on + strand at 842.107 kb on - strand at 842.113 kb on + strand at 842.113 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.134 kb on + strand at 842.134 kb on + strand at 842.134 kb on + strand at 842.134 kb on + strand at 842.134 kb on + strand at 842.134 kb on + strand at 842.135 kb on - strand at 842.135 kb on - strand at 842.135 kb on - strand at 842.135 kb on - strand at 842.135 kb on - strand at 842.185 kb on + strand at 842.185 kb on + strand at 842.185 kb on + strand at 842.185 kb on + strand at 842.186 kb on - strand at 842.186 kb on - strand at 842.186 kb on - strand at 842.201 kb on + strand at 842.202 kb on - strand at 842.202 kb on - strand at 842.202 kb on - strand at 842.202 kb on - strand at 842.202 kb on - strand at 842.380 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 840,479 + +1.2 840,479 + +0.4 840,480 - -0.5 840,480 - -0.6 840,480 - -0.5 840,480 - +0.4 840,512 + -1.1 840,523 - -0.3 840,523 - -0.3 840,536 + -1.0 840,536 + +0.3 840,536 + -0.3 840,536 + -1.5 840,536 + +1.1 840,537 - -0.5 840,537 - -0.4 840,537 - -1.8 840,537 - +1.0 840,537 - -0.8 840,537 - +0.9 840,554 + +0.5 840,554 + -0.5 840,555 - +1.1 840,555 - -0.5 840,561 + -2.5 840,561 + -1.9 840,561 + +0.5 840,561 + -0.6 840,562 - -0.8 840,562 - -0.6 840,562 - -0.5 840,583 + +0.4 840,583 + -0.1 840,583 + +0.1 840,583 + -2.0 840,583 + -1.0 840,583 + -1.3 840,584 - -1.0 840,584 - +1.9 840,584 - -1.8 840,584 - +0.3 840,588 + -1.6 840,588 + -0.5 840,588 + -0.8 840,588 + -1.9 840,589 - -0.6 840,628 + -1.5 840,690 + MPMX19_04473 0.14 -1.1 840,691 - MPMX19_04473 0.15 +0.8 840,786 + MPMX19_04473 0.25 -1.0 840,786 + MPMX19_04473 0.25 -0.4 840,786 + MPMX19_04473 0.25 -0.4 840,787 - MPMX19_04473 0.25 +1.4 840,787 - MPMX19_04473 0.25 -0.3 840,787 - MPMX19_04473 0.25 -0.2 840,787 - MPMX19_04473 0.25 -0.4 840,787 - MPMX19_04473 0.25 -2.1 840,787 - MPMX19_04473 0.25 +0.4 840,787 - MPMX19_04473 0.25 -0.8 840,798 + MPMX19_04473 0.26 +1.6 840,798 + MPMX19_04473 0.26 +0.2 840,798 + MPMX19_04473 0.26 -0.4 840,799 - MPMX19_04473 0.26 -0.5 840,799 - MPMX19_04473 0.26 -1.0 840,799 - MPMX19_04473 0.26 -1.1 840,810 - MPMX19_04473 0.28 -0.7 840,810 - MPMX19_04473 0.28 -0.1 840,838 + MPMX19_04473 0.31 -1.4 840,838 + MPMX19_04473 0.31 -0.8 840,838 + MPMX19_04473 0.31 -1.0 840,838 + MPMX19_04473 0.31 -0.3 840,839 - MPMX19_04473 0.31 -0.8 840,839 - MPMX19_04473 0.31 -1.4 840,839 - MPMX19_04473 0.31 -0.0 840,839 - MPMX19_04473 0.31 +0.4 840,909 + MPMX19_04473 0.39 +0.6 840,909 + MPMX19_04473 0.39 -1.1 840,909 + MPMX19_04473 0.39 +0.8 840,909 + MPMX19_04473 0.39 -0.4 840,909 + MPMX19_04473 0.39 +0.4 840,909 + MPMX19_04473 0.39 +1.6 840,910 - MPMX19_04473 0.39 -1.4 840,910 - MPMX19_04473 0.39 +0.6 840,910 - MPMX19_04473 0.39 -0.7 841,086 - MPMX19_04473 0.58 -0.1 841,086 - MPMX19_04473 0.58 -1.0 841,086 - MPMX19_04473 0.58 -0.4 841,122 + MPMX19_04473 0.62 -0.4 841,122 + MPMX19_04473 0.62 -0.5 841,122 + MPMX19_04473 0.62 -0.5 841,122 + MPMX19_04473 0.62 -0.4 841,122 + MPMX19_04473 0.62 -1.0 841,122 + MPMX19_04473 0.62 -1.1 841,122 + MPMX19_04473 0.62 -1.0 841,122 + MPMX19_04473 0.62 -0.9 841,122 + MPMX19_04473 0.62 -1.5 841,122 + MPMX19_04473 0.62 -0.9 841,123 - MPMX19_04473 0.62 -0.7 841,123 - MPMX19_04473 0.62 -2.0 841,123 - MPMX19_04473 0.62 +0.8 841,123 - MPMX19_04473 0.62 +0.9 841,129 - MPMX19_04473 0.63 -0.8 841,129 - MPMX19_04473 0.63 +2.2 841,181 - MPMX19_04473 0.69 -1.9 841,206 + MPMX19_04473 0.72 -1.7 841,206 + MPMX19_04473 0.72 -0.8 841,206 + MPMX19_04473 0.72 -1.8 841,206 + MPMX19_04473 0.72 +0.2 841,206 + MPMX19_04473 0.72 -0.7 841,206 + MPMX19_04473 0.72 -0.6 841,206 + MPMX19_04473 0.72 +0.3 841,207 - MPMX19_04473 0.72 +0.3 841,207 - MPMX19_04473 0.72 +1.2 841,207 - MPMX19_04473 0.72 +1.3 841,207 - MPMX19_04473 0.72 -1.3 841,293 + MPMX19_04473 0.81 -0.4 841,293 + MPMX19_04473 0.81 -1.0 841,293 + MPMX19_04473 0.81 +2.2 841,293 + MPMX19_04473 0.81 +0.0 841,293 + MPMX19_04473 0.81 -1.0 841,293 + MPMX19_04473 0.81 -1.0 841,293 + MPMX19_04473 0.81 +0.6 841,293 + MPMX19_04473 0.81 -0.5 841,294 - MPMX19_04473 0.81 -0.8 841,294 - MPMX19_04473 0.81 -0.4 841,294 - MPMX19_04473 0.81 -1.5 841,501 + -1.1 841,502 - -1.0 841,591 + -0.1 841,591 + -1.1 841,591 + -1.0 841,591 + +0.2 841,591 + +0.6 841,591 + +0.6 841,592 - -0.1 841,592 - -1.5 841,649 - +0.2 841,649 - +0.0 841,649 - +0.2 841,649 - +0.6 841,798 + MPMX19_04474 0.28 +0.4 841,798 + MPMX19_04474 0.28 -1.3 841,798 + MPMX19_04474 0.28 +0.4 841,798 + MPMX19_04474 0.28 -0.6 841,798 + MPMX19_04474 0.28 +0.2 841,798 + MPMX19_04474 0.28 -3.3 841,798 + MPMX19_04474 0.28 -1.3 841,798 + MPMX19_04474 0.28 -0.1 841,798 + MPMX19_04474 0.28 -1.6 841,799 - MPMX19_04474 0.28 -0.4 841,799 - MPMX19_04474 0.28 -1.5 841,799 - MPMX19_04474 0.28 +0.4 841,799 - MPMX19_04474 0.28 +0.4 841,799 - MPMX19_04474 0.28 +1.6 841,825 - MPMX19_04474 0.35 +0.0 841,879 + MPMX19_04474 0.50 -0.3 841,880 - MPMX19_04474 0.50 -0.5 841,964 + MPMX19_04474 0.74 +1.2 842,048 + -2.0 842,048 + -1.3 842,048 + -0.4 842,048 + +0.1 842,048 + -1.9 842,048 + -0.5 842,048 + -0.6 842,048 + -1.5 842,048 + +1.2 842,049 - -1.1 842,049 - -2.8 842,049 - +0.2 842,049 - -1.5 842,049 - -2.0 842,075 + -0.9 842,075 + +0.6 842,075 + -1.3 842,075 + -1.8 842,075 + -1.4 842,075 + -1.8 842,075 + -0.7 842,075 + -2.4 842,075 + -1.5 842,075 + -1.7 842,075 + -1.8 842,075 + -1.1 842,075 + -0.6 842,075 + -0.3 842,076 - +0.7 842,076 - -1.7 842,076 - -0.3 842,076 - -1.4 842,076 - -1.1 842,076 - -1.8 842,076 - -1.4 842,076 - +0.1 842,076 - -1.7 842,076 - -0.1 842,076 - -1.1 842,076 - +1.4 842,106 + -0.4 842,106 + -0.3 842,106 + -1.3 842,107 - +1.2 842,113 + +0.0 842,113 + -0.8 842,128 + +0.6 842,128 + -0.8 842,128 + -2.0 842,128 + +0.8 842,128 + -0.1 842,128 + +1.9 842,128 + -1.7 842,128 + -1.2 842,128 + +1.6 842,128 + -0.9 842,128 + -0.1 842,128 + +0.0 842,129 - +0.4 842,129 - -1.6 842,129 - -2.4 842,129 - -0.6 842,129 - +0.2 842,129 - +2.2 842,129 - -0.8 842,129 - -0.3 842,129 - +0.3 842,129 - +0.1 842,129 - -1.8 842,129 - -0.9 842,132 + +0.5 842,132 + +0.9 842,132 + -1.5 842,132 + +0.0 842,132 + +0.2 842,132 + +0.0 842,132 + -0.2 842,132 + +1.2 842,132 + -0.3 842,133 - -0.1 842,133 - +0.6 842,133 - -1.0 842,133 - -0.8 842,133 - -0.1 842,133 - -1.3 842,133 - -0.3 842,133 - -1.0 842,133 - +0.5 842,133 - +0.3 842,133 - -0.1 842,133 - +0.1 842,133 - -1.1 842,133 - -1.4 842,133 - -0.5 842,133 - +0.9 842,133 - +0.4 842,134 + -0.2 842,134 + -0.3 842,134 + -1.1 842,134 + -1.3 842,134 + -0.5 842,134 + -0.1 842,135 - -1.6 842,135 - -0.9 842,135 - -1.3 842,135 - +0.0 842,135 - +0.5 842,185 + -0.8 842,185 + -2.2 842,185 + -0.3 842,185 + +0.2 842,186 - -2.7 842,186 - +0.9 842,186 - -0.6 842,201 + +0.3 842,202 - -1.0 842,202 - +0.2 842,202 - +0.3 842,202 - -1.4 842,202 - -0.8 842,380 + -1.1
Or see this region's nucleotide sequence