Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04465 and MPMX19_04466 are separated by 168 nucleotides MPMX19_04466 and MPMX19_04467 are separated by 216 nucleotides MPMX19_04467 and MPMX19_04468 are separated by 206 nucleotides
MPMX19_04465: MPMX19_04465 - Pantothenate synthetase, at 832,642 to 833,550
_04465
MPMX19_04466: MPMX19_04466 - hypothetical protein, at 833,719 to 833,883
_04466
MPMX19_04467: MPMX19_04467 - tRNA-Val, at 834,100 to 834,174
_04467
MPMX19_04468: MPMX19_04468 - hypothetical protein, at 834,381 to 835,286
_04468
Position (kb) 833
834 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.780 kb on - strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.923 kb on - strand, within MPMX19_04465 at 832.923 kb on - strand, within MPMX19_04465 at 832.923 kb on - strand, within MPMX19_04465 at 832.923 kb on - strand, within MPMX19_04465 at 832.923 kb on - strand, within MPMX19_04465 at 833.039 kb on + strand, within MPMX19_04465 at 833.039 kb on + strand, within MPMX19_04465 at 833.039 kb on + strand, within MPMX19_04465 at 833.039 kb on + strand, within MPMX19_04465 at 833.040 kb on - strand, within MPMX19_04465 at 833.040 kb on - strand, within MPMX19_04465 at 833.040 kb on - strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.219 kb on + strand, within MPMX19_04465 at 833.219 kb on + strand, within MPMX19_04465 at 833.219 kb on + strand, within MPMX19_04465 at 833.220 kb on - strand, within MPMX19_04465 at 833.635 kb on + strand at 833.636 kb on - strand at 833.636 kb on - strand at 833.636 kb on - strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.647 kb on - strand at 833.647 kb on - strand at 833.647 kb on - strand at 833.647 kb on - strand at 833.727 kb on + strand at 833.747 kb on + strand, within MPMX19_04466 at 833.747 kb on + strand, within MPMX19_04466 at 833.748 kb on + strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.874 kb on + strand at 833.928 kb on + strand at 833.928 kb on + strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.933 kb on + strand at 833.933 kb on + strand at 833.933 kb on + strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.990 kb on + strand at 833.990 kb on + strand at 833.991 kb on - strand at 833.991 kb on - strand at 834.098 kb on - strand at 834.098 kb on - strand at 834.098 kb on - strand at 834.300 kb on + strand at 834.301 kb on - strand at 834.301 kb on - strand at 834.301 kb on - strand at 834.531 kb on + strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 832,772 + MPMX19_04465 0.14 +0.1 832,772 + MPMX19_04465 0.14 -0.2 832,772 + MPMX19_04465 0.14 -1.6 832,772 + MPMX19_04465 0.14 -0.3 832,772 + MPMX19_04465 0.14 +0.0 832,772 + MPMX19_04465 0.14 +0.4 832,772 + MPMX19_04465 0.14 -1.4 832,772 + MPMX19_04465 0.14 +1.8 832,772 + MPMX19_04465 0.14 +0.6 832,772 + MPMX19_04465 0.14 +0.6 832,773 - MPMX19_04465 0.14 -0.5 832,773 - MPMX19_04465 0.14 -1.1 832,773 - MPMX19_04465 0.14 -0.7 832,773 - MPMX19_04465 0.14 +0.3 832,773 - MPMX19_04465 0.14 -0.8 832,773 - MPMX19_04465 0.14 -0.8 832,773 - MPMX19_04465 0.14 -0.2 832,773 - MPMX19_04465 0.14 -0.4 832,773 - MPMX19_04465 0.14 -1.6 832,773 - MPMX19_04465 0.14 -1.0 832,773 - MPMX19_04465 0.14 -1.6 832,773 - MPMX19_04465 0.14 -2.0 832,773 - MPMX19_04465 0.14 -0.4 832,780 - MPMX19_04465 0.15 -1.1 832,922 + MPMX19_04465 0.31 +0.8 832,922 + MPMX19_04465 0.31 -1.4 832,922 + MPMX19_04465 0.31 +0.9 832,922 + MPMX19_04465 0.31 -1.1 832,922 + MPMX19_04465 0.31 +0.0 832,922 + MPMX19_04465 0.31 -1.1 832,922 + MPMX19_04465 0.31 +0.3 832,923 - MPMX19_04465 0.31 -0.9 832,923 - MPMX19_04465 0.31 -1.0 832,923 - MPMX19_04465 0.31 +0.0 832,923 - MPMX19_04465 0.31 +0.2 832,923 - MPMX19_04465 0.31 -0.6 833,039 + MPMX19_04465 0.44 -0.6 833,039 + MPMX19_04465 0.44 -1.2 833,039 + MPMX19_04465 0.44 +0.8 833,039 + MPMX19_04465 0.44 -1.2 833,040 - MPMX19_04465 0.44 -0.8 833,040 - MPMX19_04465 0.44 -0.5 833,040 - MPMX19_04465 0.44 -0.5 833,195 + MPMX19_04465 0.61 +0.1 833,195 + MPMX19_04465 0.61 -0.8 833,195 + MPMX19_04465 0.61 +0.2 833,195 + MPMX19_04465 0.61 -0.1 833,195 + MPMX19_04465 0.61 +0.1 833,195 + MPMX19_04465 0.61 +0.0 833,195 + MPMX19_04465 0.61 -1.0 833,196 - MPMX19_04465 0.61 -0.4 833,196 - MPMX19_04465 0.61 +0.4 833,196 - MPMX19_04465 0.61 -0.1 833,196 - MPMX19_04465 0.61 -0.3 833,196 - MPMX19_04465 0.61 -1.7 833,196 - MPMX19_04465 0.61 +0.1 833,196 - MPMX19_04465 0.61 -1.7 833,196 - MPMX19_04465 0.61 -1.1 833,219 + MPMX19_04465 0.63 -2.1 833,219 + MPMX19_04465 0.63 +0.6 833,219 + MPMX19_04465 0.63 +0.4 833,220 - MPMX19_04465 0.64 +0.6 833,635 + -0.8 833,636 - -1.7 833,636 - -0.8 833,636 - +0.3 833,646 + -1.1 833,646 + -0.6 833,646 + -2.5 833,646 + +0.9 833,646 + -2.1 833,647 - -0.8 833,647 - -0.0 833,647 - -0.6 833,647 - -1.4 833,727 + +0.2 833,747 + MPMX19_04466 0.17 +0.3 833,747 + MPMX19_04466 0.17 -1.8 833,748 + MPMX19_04466 0.18 -0.4 833,748 - MPMX19_04466 0.18 -1.9 833,748 - MPMX19_04466 0.18 -0.7 833,748 - MPMX19_04466 0.18 -1.2 833,748 - MPMX19_04466 0.18 -0.1 833,748 - MPMX19_04466 0.18 -0.0 833,748 - MPMX19_04466 0.18 -3.0 833,874 + -1.4 833,928 + -2.0 833,928 + -0.8 833,929 - -0.6 833,929 - -1.7 833,929 - -2.3 833,929 - +0.0 833,929 - -0.9 833,929 - -0.1 833,933 + -1.0 833,933 + -1.5 833,933 + +1.2 833,934 - +0.2 833,934 - -0.3 833,934 - -1.3 833,934 - -1.3 833,934 - -0.1 833,934 - +0.9 833,934 - -1.3 833,934 - -1.7 833,990 + -0.1 833,990 + -0.5 833,991 - +1.0 833,991 - +0.5 834,098 - -0.3 834,098 - +0.0 834,098 - -0.8 834,300 + +0.4 834,301 - -1.4 834,301 - -1.4 834,301 - -0.5 834,531 + MPMX19_04468 0.17 -1.1 834,532 - MPMX19_04468 0.17 -0.6 834,532 - MPMX19_04468 0.17 +0.2 834,532 - MPMX19_04468 0.17 +0.2 834,532 - MPMX19_04468 0.17 -1.9 834,765 + MPMX19_04468 0.42 +0.3 834,765 + MPMX19_04468 0.42 -0.3 834,765 + MPMX19_04468 0.42 +0.2 834,765 + MPMX19_04468 0.42 -0.1 834,765 + MPMX19_04468 0.42 -0.8 834,765 + MPMX19_04468 0.42 -0.6 834,765 + MPMX19_04468 0.42 -0.2 834,765 + MPMX19_04468 0.42 +0.3 834,765 + MPMX19_04468 0.42 -1.4 834,765 + MPMX19_04468 0.42 -0.7 834,766 - MPMX19_04468 0.42 -0.0 834,766 - MPMX19_04468 0.42 -0.8 834,766 - MPMX19_04468 0.42 -0.4 834,766 - MPMX19_04468 0.42 -0.3 834,766 - MPMX19_04468 0.42 -1.3
Or see this region's nucleotide sequence