Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04458

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04457 and MPMX19_04458 overlap by 4 nucleotidesMPMX19_04458 and MPMX19_04459 are separated by 154 nucleotides MPMX19_04457: MPMX19_04457 - Pyruvate, phosphate dikinase, at 823,817 to 825,532 _04457 MPMX19_04458: MPMX19_04458 - 2-hydroxy-3-oxopropionate reductase, at 825,529 to 826,107 _04458 MPMX19_04459: MPMX19_04459 - hypothetical protein, at 826,262 to 827,056 _04459 Position (kb) 825 826 827Strain fitness (log2 ratio) -2 -1 0 1at 825.060 kb on + strand, within MPMX19_04457at 825.060 kb on + strand, within MPMX19_04457at 825.060 kb on + strand, within MPMX19_04457at 825.060 kb on + strand, within MPMX19_04457at 825.060 kb on + strand, within MPMX19_04457at 825.061 kb on - strand, within MPMX19_04457at 825.061 kb on - strand, within MPMX19_04457at 825.061 kb on - strand, within MPMX19_04457at 825.061 kb on - strand, within MPMX19_04457at 825.061 kb on - strand, within MPMX19_04457at 825.061 kb on - strand, within MPMX19_04457at 825.687 kb on + strand, within MPMX19_04458at 825.688 kb on - strand, within MPMX19_04458at 825.762 kb on + strand, within MPMX19_04458at 825.763 kb on - strand, within MPMX19_04458at 825.763 kb on - strand, within MPMX19_04458at 825.763 kb on - strand, within MPMX19_04458at 825.763 kb on - strand, within MPMX19_04458at 825.763 kb on - strand, within MPMX19_04458at 826.208 kb on + strandat 826.257 kb on + strandat 826.274 kb on - strandat 826.477 kb on - strand, within MPMX19_04459at 826.477 kb on - strand, within MPMX19_04459at 826.477 kb on - strand, within MPMX19_04459at 826.477 kb on - strand, within MPMX19_04459at 826.477 kb on - strand, within MPMX19_04459at 826.477 kb on - strand, within MPMX19_04459at 826.599 kb on + strand, within MPMX19_04459at 826.599 kb on + strand, within MPMX19_04459at 826.599 kb on + strand, within MPMX19_04459at 826.599 kb on + strand, within MPMX19_04459at 826.599 kb on + strand, within MPMX19_04459at 826.599 kb on + strand, within MPMX19_04459at 826.599 kb on + strand, within MPMX19_04459at 826.599 kb on + strand, within MPMX19_04459at 826.599 kb on + strand, within MPMX19_04459at 826.599 kb on + strand, within MPMX19_04459at 826.599 kb on + strand, within MPMX19_04459at 826.599 kb on + strand, within MPMX19_04459at 826.600 kb on - strand, within MPMX19_04459at 826.600 kb on - strand, within MPMX19_04459at 826.600 kb on - strand, within MPMX19_04459at 826.600 kb on - strand, within MPMX19_04459at 826.600 kb on - strand, within MPMX19_04459at 826.600 kb on - strand, within MPMX19_04459at 826.600 kb on - strand, within MPMX19_04459at 826.600 kb on - strand, within MPMX19_04459at 826.600 kb on - strand, within MPMX19_04459at 826.600 kb on - strand, within MPMX19_04459at 826.600 kb on - strand, within MPMX19_04459at 826.600 kb on - strand, within MPMX19_04459

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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825,060 + MPMX19_04457 0.72 +0.6
825,060 + MPMX19_04457 0.72 -2.0
825,060 + MPMX19_04457 0.72 -1.1
825,060 + MPMX19_04457 0.72 -1.0
825,060 + MPMX19_04457 0.72 +0.8
825,061 - MPMX19_04457 0.72 +0.6
825,061 - MPMX19_04457 0.72 +0.5
825,061 - MPMX19_04457 0.72 -0.8
825,061 - MPMX19_04457 0.72 -0.9
825,061 - MPMX19_04457 0.72 -0.3
825,061 - MPMX19_04457 0.72 -0.0
825,687 + MPMX19_04458 0.27 -2.5
825,688 - MPMX19_04458 0.27 +0.0
825,762 + MPMX19_04458 0.40 -0.5
825,763 - MPMX19_04458 0.40 +0.7
825,763 - MPMX19_04458 0.40 +0.2
825,763 - MPMX19_04458 0.40 +0.8
825,763 - MPMX19_04458 0.40 -0.1
825,763 - MPMX19_04458 0.40 -0.8
826,208 + -1.7
826,257 + -0.8
826,274 - -2.1
826,477 - MPMX19_04459 0.27 -0.1
826,477 - MPMX19_04459 0.27 -0.2
826,477 - MPMX19_04459 0.27 +0.1
826,477 - MPMX19_04459 0.27 -0.7
826,477 - MPMX19_04459 0.27 +0.4
826,477 - MPMX19_04459 0.27 -1.0
826,599 + MPMX19_04459 0.42 -0.1
826,599 + MPMX19_04459 0.42 -0.3
826,599 + MPMX19_04459 0.42 -1.0
826,599 + MPMX19_04459 0.42 -0.6
826,599 + MPMX19_04459 0.42 -0.4
826,599 + MPMX19_04459 0.42 -1.1
826,599 + MPMX19_04459 0.42 -1.2
826,599 + MPMX19_04459 0.42 +0.8
826,599 + MPMX19_04459 0.42 -0.7
826,599 + MPMX19_04459 0.42 -0.6
826,599 + MPMX19_04459 0.42 +0.6
826,599 + MPMX19_04459 0.42 -1.1
826,600 - MPMX19_04459 0.43 -1.5
826,600 - MPMX19_04459 0.43 +0.2
826,600 - MPMX19_04459 0.43 -1.0
826,600 - MPMX19_04459 0.43 -1.1
826,600 - MPMX19_04459 0.43 +0.4
826,600 - MPMX19_04459 0.43 -0.1
826,600 - MPMX19_04459 0.43 +1.0
826,600 - MPMX19_04459 0.43 -1.1
826,600 - MPMX19_04459 0.43 +0.6
826,600 - MPMX19_04459 0.43 +0.0
826,600 - MPMX19_04459 0.43 +0.3
826,600 - MPMX19_04459 0.43 -1.5

Or see this region's nucleotide sequence