Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04451

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04450 and MPMX19_04451 are separated by 226 nucleotidesMPMX19_04451 and MPMX19_04452 are separated by 302 nucleotides MPMX19_04450: MPMX19_04450 - hypothetical protein, at 817,010 to 818,038 _04450 MPMX19_04451: MPMX19_04451 - hypothetical protein, at 818,265 to 819,008 _04451 MPMX19_04452: MPMX19_04452 - Oxalate:formate antiporter, at 819,311 to 820,615 _04452 Position (kb) 818 819 820Strain fitness (log2 ratio) -2 -1 0 1 2at 817.560 kb on + strand, within MPMX19_04450at 817.560 kb on + strand, within MPMX19_04450at 817.560 kb on + strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.561 kb on - strand, within MPMX19_04450at 817.605 kb on + strand, within MPMX19_04450at 817.605 kb on + strand, within MPMX19_04450at 817.710 kb on + strand, within MPMX19_04450at 817.711 kb on - strand, within MPMX19_04450at 817.711 kb on - strand, within MPMX19_04450at 817.711 kb on - strand, within MPMX19_04450at 817.711 kb on - strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.716 kb on + strand, within MPMX19_04450at 817.717 kb on - strand, within MPMX19_04450at 817.717 kb on - strand, within MPMX19_04450at 817.722 kb on + strand, within MPMX19_04450at 817.722 kb on + strand, within MPMX19_04450at 817.722 kb on + strand, within MPMX19_04450at 817.722 kb on + strand, within MPMX19_04450at 817.723 kb on - strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.830 kb on + strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.831 kb on - strand, within MPMX19_04450at 817.998 kb on + strandat 817.999 kb on - strandat 817.999 kb on - strandat 818.022 kb on + strandat 818.022 kb on + strandat 818.022 kb on + strandat 818.022 kb on + strandat 818.022 kb on + strandat 818.022 kb on + strandat 818.022 kb on + strandat 818.022 kb on + strandat 818.023 kb on - strandat 818.023 kb on - strandat 818.023 kb on - strandat 818.023 kb on - strandat 818.023 kb on - strandat 818.023 kb on - strandat 818.023 kb on - strandat 818.023 kb on - strandat 818.023 kb on - strandat 818.250 kb on + strandat 818.250 kb on + strandat 818.250 kb on + strandat 818.251 kb on - strandat 818.251 kb on - strandat 818.287 kb on + strandat 818.287 kb on + strandat 818.287 kb on + strandat 818.371 kb on + strand, within MPMX19_04451at 818.371 kb on + strand, within MPMX19_04451at 818.371 kb on + strand, within MPMX19_04451at 818.371 kb on + strand, within MPMX19_04451at 818.372 kb on - strand, within MPMX19_04451at 818.570 kb on - strand, within MPMX19_04451at 818.570 kb on - strand, within MPMX19_04451at 818.578 kb on + strand, within MPMX19_04451at 818.578 kb on + strand, within MPMX19_04451at 818.578 kb on + strand, within MPMX19_04451at 818.578 kb on + strand, within MPMX19_04451at 818.578 kb on + strand, within MPMX19_04451at 818.578 kb on + strand, within MPMX19_04451at 818.579 kb on - strand, within MPMX19_04451at 818.579 kb on - strand, within MPMX19_04451at 818.579 kb on - strand, within MPMX19_04451at 818.579 kb on - strand, within MPMX19_04451at 818.579 kb on - strand, within MPMX19_04451at 818.579 kb on - strand, within MPMX19_04451at 818.579 kb on - strand, within MPMX19_04451at 818.654 kb on - strand, within MPMX19_04451at 818.654 kb on - strand, within MPMX19_04451at 818.827 kb on + strand, within MPMX19_04451at 818.828 kb on - strand, within MPMX19_04451at 818.828 kb on - strand, within MPMX19_04451at 818.999 kb on + strandat 818.999 kb on + strandat 818.999 kb on + strandat 818.999 kb on + strandat 818.999 kb on + strandat 818.999 kb on + strandat 818.999 kb on + strandat 819.000 kb on - strandat 819.000 kb on - strandat 819.000 kb on - strandat 819.215 kb on + strandat 819.215 kb on + strandat 819.215 kb on + strandat 819.216 kb on - strandat 819.216 kb on - strandat 819.230 kb on + strandat 819.230 kb on + strandat 819.230 kb on + strandat 819.230 kb on + strandat 819.230 kb on + strandat 819.230 kb on + strandat 819.230 kb on + strandat 819.230 kb on + strandat 819.230 kb on + strandat 819.230 kb on + strandat 819.231 kb on - strandat 819.231 kb on - strandat 819.231 kb on - strandat 819.231 kb on - strandat 819.231 kb on - strandat 819.231 kb on - strandat 819.231 kb on - strandat 819.246 kb on + strandat 819.247 kb on - strandat 819.247 kb on - strandat 819.247 kb on - strandat 819.525 kb on + strand, within MPMX19_04452at 819.525 kb on + strand, within MPMX19_04452at 819.525 kb on + strand, within MPMX19_04452at 819.525 kb on + strand, within MPMX19_04452at 819.525 kb on + strand, within MPMX19_04452at 819.525 kb on + strand, within MPMX19_04452at 819.525 kb on + strand, within MPMX19_04452at 819.526 kb on - strand, within MPMX19_04452at 819.526 kb on - strand, within MPMX19_04452at 819.526 kb on - strand, within MPMX19_04452at 819.526 kb on - strand, within MPMX19_04452at 819.598 kb on - strand, within MPMX19_04452at 819.598 kb on - strand, within MPMX19_04452at 819.598 kb on - strand, within MPMX19_04452at 819.598 kb on - strand, within MPMX19_04452at 819.598 kb on - strand, within MPMX19_04452at 819.733 kb on + strand, within MPMX19_04452at 819.733 kb on + strand, within MPMX19_04452at 819.734 kb on - strand, within MPMX19_04452at 819.734 kb on - strand, within MPMX19_04452at 819.734 kb on - strand, within MPMX19_04452at 819.930 kb on + strand, within MPMX19_04452at 819.930 kb on + strand, within MPMX19_04452at 819.930 kb on + strand, within MPMX19_04452at 819.930 kb on + strand, within MPMX19_04452at 819.930 kb on + strand, within MPMX19_04452at 819.930 kb on + strand, within MPMX19_04452at 819.930 kb on + strand, within MPMX19_04452at 819.930 kb on + strand, within MPMX19_04452at 819.930 kb on + strand, within MPMX19_04452at 819.930 kb on + strand, within MPMX19_04452at 819.930 kb on + strand, within MPMX19_04452at 819.930 kb on + strand, within MPMX19_04452at 819.930 kb on + strand, within MPMX19_04452at 819.930 kb on + strand, within MPMX19_04452at 819.931 kb on - strand, within MPMX19_04452at 819.931 kb on - strand, within MPMX19_04452at 819.931 kb on - strand, within MPMX19_04452at 819.931 kb on - strand, within MPMX19_04452at 819.931 kb on - strand, within MPMX19_04452at 819.931 kb on - strand, within MPMX19_04452at 819.931 kb on - strand, within MPMX19_04452at 819.931 kb on - strand, within MPMX19_04452at 819.931 kb on - strand, within MPMX19_04452at 819.931 kb on - strand, within MPMX19_04452at 819.931 kb on - strand, within MPMX19_04452at 819.975 kb on + strand, within MPMX19_04452at 819.975 kb on + strand, within MPMX19_04452at 819.975 kb on + strand, within MPMX19_04452at 819.975 kb on + strand, within MPMX19_04452at 819.975 kb on + strand, within MPMX19_04452at 819.975 kb on + strand, within MPMX19_04452at 819.975 kb on + strand, within MPMX19_04452at 819.975 kb on + strand, within MPMX19_04452at 819.975 kb on + strand, within MPMX19_04452at 819.975 kb on + strand, within MPMX19_04452at 819.976 kb on - strand, within MPMX19_04452at 819.976 kb on - strand, within MPMX19_04452at 819.976 kb on - strand, within MPMX19_04452at 819.976 kb on - strand, within MPMX19_04452at 819.976 kb on - strand, within MPMX19_04452at 819.976 kb on - strand, within MPMX19_04452at 819.976 kb on - strand, within MPMX19_04452at 819.976 kb on - strand, within MPMX19_04452at 819.976 kb on - strand, within MPMX19_04452at 819.976 kb on - strand, within MPMX19_04452at 819.976 kb on - strand, within MPMX19_04452at 819.976 kb on - strand, within MPMX19_04452at 819.976 kb on - strand, within MPMX19_04452at 819.976 kb on - strand, within MPMX19_04452at 819.976 kb on - strand, within MPMX19_04452

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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817,560 + MPMX19_04450 0.53 +1.0
817,560 + MPMX19_04450 0.53 -1.9
817,560 + MPMX19_04450 0.53 -0.7
817,561 - MPMX19_04450 0.54 -0.4
817,561 - MPMX19_04450 0.54 -0.1
817,561 - MPMX19_04450 0.54 -1.0
817,561 - MPMX19_04450 0.54 +0.8
817,561 - MPMX19_04450 0.54 -1.5
817,561 - MPMX19_04450 0.54 -0.4
817,561 - MPMX19_04450 0.54 -0.5
817,561 - MPMX19_04450 0.54 +0.2
817,561 - MPMX19_04450 0.54 -1.3
817,561 - MPMX19_04450 0.54 +1.2
817,605 + MPMX19_04450 0.58 -1.1
817,605 + MPMX19_04450 0.58 -2.1
817,710 + MPMX19_04450 0.68 +1.6
817,711 - MPMX19_04450 0.68 -0.6
817,711 - MPMX19_04450 0.68 -1.4
817,711 - MPMX19_04450 0.68 -1.0
817,711 - MPMX19_04450 0.68 +0.1
817,716 + MPMX19_04450 0.69 -1.1
817,716 + MPMX19_04450 0.69 +0.3
817,716 + MPMX19_04450 0.69 -1.2
817,716 + MPMX19_04450 0.69 -0.4
817,716 + MPMX19_04450 0.69 -0.1
817,716 + MPMX19_04450 0.69 -0.4
817,716 + MPMX19_04450 0.69 -0.9
817,716 + MPMX19_04450 0.69 -0.3
817,716 + MPMX19_04450 0.69 +0.7
817,717 - MPMX19_04450 0.69 -0.5
817,717 - MPMX19_04450 0.69 -2.7
817,722 + MPMX19_04450 0.69 +0.9
817,722 + MPMX19_04450 0.69 -1.9
817,722 + MPMX19_04450 0.69 -0.0
817,722 + MPMX19_04450 0.69 +0.2
817,723 - MPMX19_04450 0.69 +0.2
817,830 + MPMX19_04450 0.80 -1.3
817,830 + MPMX19_04450 0.80 -0.1
817,830 + MPMX19_04450 0.80 -1.0
817,830 + MPMX19_04450 0.80 -0.5
817,830 + MPMX19_04450 0.80 -0.4
817,830 + MPMX19_04450 0.80 +0.1
817,830 + MPMX19_04450 0.80 +0.2
817,831 - MPMX19_04450 0.80 -0.1
817,831 - MPMX19_04450 0.80 -0.1
817,831 - MPMX19_04450 0.80 +0.0
817,831 - MPMX19_04450 0.80 -1.4
817,831 - MPMX19_04450 0.80 +0.0
817,831 - MPMX19_04450 0.80 +0.9
817,831 - MPMX19_04450 0.80 -2.6
817,998 + -1.8
817,999 - -0.2
817,999 - +0.6
818,022 + +0.2
818,022 + +0.2
818,022 + -0.6
818,022 + -2.3
818,022 + -1.1
818,022 + +1.5
818,022 + +0.9
818,022 + -0.8
818,023 - +0.1
818,023 - +0.4
818,023 - -0.9
818,023 - +0.2
818,023 - -0.1
818,023 - -1.0
818,023 - -1.5
818,023 - -2.4
818,023 - +0.4
818,250 + -1.1
818,250 + +0.3
818,250 + +1.2
818,251 - -0.9
818,251 - -0.4
818,287 + -0.4
818,287 + -1.5
818,287 + -2.2
818,371 + MPMX19_04451 0.14 +0.5
818,371 + MPMX19_04451 0.14 -1.9
818,371 + MPMX19_04451 0.14 +0.2
818,371 + MPMX19_04451 0.14 -1.4
818,372 - MPMX19_04451 0.14 +1.2
818,570 - MPMX19_04451 0.41 -0.9
818,570 - MPMX19_04451 0.41 -0.3
818,578 + MPMX19_04451 0.42 -1.7
818,578 + MPMX19_04451 0.42 +0.3
818,578 + MPMX19_04451 0.42 -1.3
818,578 + MPMX19_04451 0.42 -1.8
818,578 + MPMX19_04451 0.42 -1.6
818,578 + MPMX19_04451 0.42 +2.2
818,579 - MPMX19_04451 0.42 +0.2
818,579 - MPMX19_04451 0.42 +1.2
818,579 - MPMX19_04451 0.42 +0.6
818,579 - MPMX19_04451 0.42 +2.2
818,579 - MPMX19_04451 0.42 +0.2
818,579 - MPMX19_04451 0.42 -1.0
818,579 - MPMX19_04451 0.42 -1.7
818,654 - MPMX19_04451 0.52 +0.1
818,654 - MPMX19_04451 0.52 +0.3
818,827 + MPMX19_04451 0.76 +0.4
818,828 - MPMX19_04451 0.76 +1.9
818,828 - MPMX19_04451 0.76 -1.1
818,999 + -0.3
818,999 + +0.4
818,999 + -1.5
818,999 + -1.4
818,999 + +0.9
818,999 + -0.3
818,999 + -0.8
819,000 - +1.2
819,000 - -0.1
819,000 - +0.4
819,215 + -0.8
819,215 + +0.6
819,215 + -1.6
819,216 - -0.1
819,216 - -0.7
819,230 + -1.6
819,230 + -0.6
819,230 + -0.3
819,230 + -1.4
819,230 + -0.0
819,230 + +0.0
819,230 + -0.5
819,230 + -1.3
819,230 + -0.6
819,230 + -0.4
819,231 - -0.7
819,231 - -0.3
819,231 - -0.6
819,231 - -0.1
819,231 - -0.1
819,231 - -0.5
819,231 - -1.6
819,246 + -0.8
819,247 - -1.1
819,247 - -0.8
819,247 - -1.6
819,525 + MPMX19_04452 0.16 -0.2
819,525 + MPMX19_04452 0.16 +0.4
819,525 + MPMX19_04452 0.16 +1.6
819,525 + MPMX19_04452 0.16 -1.1
819,525 + MPMX19_04452 0.16 +0.6
819,525 + MPMX19_04452 0.16 +1.0
819,525 + MPMX19_04452 0.16 +0.2
819,526 - MPMX19_04452 0.16 -1.1
819,526 - MPMX19_04452 0.16 +0.6
819,526 - MPMX19_04452 0.16 -0.9
819,526 - MPMX19_04452 0.16 -0.5
819,598 - MPMX19_04452 0.22 +0.1
819,598 - MPMX19_04452 0.22 -1.2
819,598 - MPMX19_04452 0.22 +1.2
819,598 - MPMX19_04452 0.22 -0.7
819,598 - MPMX19_04452 0.22 +0.3
819,733 + MPMX19_04452 0.32 -1.3
819,733 + MPMX19_04452 0.32 -0.1
819,734 - MPMX19_04452 0.32 -0.6
819,734 - MPMX19_04452 0.32 -1.1
819,734 - MPMX19_04452 0.32 -0.5
819,930 + MPMX19_04452 0.47 +0.4
819,930 + MPMX19_04452 0.47 -0.7
819,930 + MPMX19_04452 0.47 +1.2
819,930 + MPMX19_04452 0.47 +0.4
819,930 + MPMX19_04452 0.47 +0.1
819,930 + MPMX19_04452 0.47 -0.8
819,930 + MPMX19_04452 0.47 -1.1
819,930 + MPMX19_04452 0.47 -1.3
819,930 + MPMX19_04452 0.47 -1.8
819,930 + MPMX19_04452 0.47 -0.1
819,930 + MPMX19_04452 0.47 +0.8
819,930 + MPMX19_04452 0.47 -1.7
819,930 + MPMX19_04452 0.47 -0.1
819,930 + MPMX19_04452 0.47 -1.4
819,931 - MPMX19_04452 0.48 -0.6
819,931 - MPMX19_04452 0.48 +0.2
819,931 - MPMX19_04452 0.48 -0.2
819,931 - MPMX19_04452 0.48 -1.9
819,931 - MPMX19_04452 0.48 -0.1
819,931 - MPMX19_04452 0.48 -1.4
819,931 - MPMX19_04452 0.48 -1.3
819,931 - MPMX19_04452 0.48 +0.1
819,931 - MPMX19_04452 0.48 -1.0
819,931 - MPMX19_04452 0.48 -0.4
819,931 - MPMX19_04452 0.48 -0.4
819,975 + MPMX19_04452 0.51 -1.0
819,975 + MPMX19_04452 0.51 -0.8
819,975 + MPMX19_04452 0.51 -0.8
819,975 + MPMX19_04452 0.51 -0.5
819,975 + MPMX19_04452 0.51 +0.2
819,975 + MPMX19_04452 0.51 -2.1
819,975 + MPMX19_04452 0.51 -1.0
819,975 + MPMX19_04452 0.51 -0.9
819,975 + MPMX19_04452 0.51 -0.3
819,975 + MPMX19_04452 0.51 -0.5
819,976 - MPMX19_04452 0.51 -0.0
819,976 - MPMX19_04452 0.51 -1.0
819,976 - MPMX19_04452 0.51 -1.1
819,976 - MPMX19_04452 0.51 -0.1
819,976 - MPMX19_04452 0.51 -1.2
819,976 - MPMX19_04452 0.51 -0.1
819,976 - MPMX19_04452 0.51 -1.4
819,976 - MPMX19_04452 0.51 -0.8
819,976 - MPMX19_04452 0.51 +0.2
819,976 - MPMX19_04452 0.51 +0.6
819,976 - MPMX19_04452 0.51 +0.4
819,976 - MPMX19_04452 0.51 +0.9
819,976 - MPMX19_04452 0.51 -0.9
819,976 - MPMX19_04452 0.51 +0.3
819,976 - MPMX19_04452 0.51 +0.1

Or see this region's nucleotide sequence